Rroxscaffold_1G00010100
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000329
Physical Location & Seq
Forward (+)
12610752 .. 12617599
6848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010100.1

Sequence Viewer

Length: 516 bp
ATGGTACCTGATTGTGTTGTCGCTGGAACTCTCCATGGTCTCGGGGTGAAGCACGAAGATCGAGTTGCAATAGTCGATGGCTTCTTCTACCACAAGCCGATTCGCAGCCTCCTTGCGCTCCAGAAACGCAGTTTCGGATTTGGGTGGGATCCGATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTTAGAAACTTTTCCGTACTATGAGGATTTGAAAATTGCAGTTGGAAATGGAACTGCAACCGGAATGGGCTCAATCGGTCTAGGTGATGATATAGATGCAAAAACATTTGGAGCGGAGGAAAATGGATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAACTACTAACATGTTTGTACAAAGTGAAAATGAATCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCGAGTATAGATGCTCCAGCTCCACCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

171

Amino Acids

18.75

Weight (kDa)

5.11

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 4, 482
AccB1I GGYRCC 2 cut(s) 4, 482
AccB7I CCANNNNNTGG 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 344
AciI CCGC 1 cut(s) 344
AclWI GGATC 3 cut(s) 143, 156, 364
AfaI GTAC 4 cut(s) 6, 248, 417, 484
AfiI CCNNNNNNNGG 2 cut(s) 218, 479
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 202, 262
AluBI AGCT 1 cut(s) 504
AluI AGCT 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 3 cut(s) 143, 156, 364
Ama87I CYCGRG 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 240
Asp718I GGTACC 2 cut(s) 4, 482
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 58, 326
AvaI CYCGRG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 225
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 2 cut(s) 4, 482
BanII GRGCYC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 117
BccI CCATC 3 cut(s) 71, 374, 463
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 6, 150, 484
BmsI GCATC 2 cut(s) 316, 485
BpmI CTGGAG 2 cut(s) 104, 484
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 34, 478
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 479
BseDI CCNNGG 2 cut(s) 34, 478
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 218, 479
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 117
BshNI GGYRCC 2 cut(s) 4, 482
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 218, 479
BsmAI GTCTC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 225, 302
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 5 cut(s) 58, 148, 153, 356, 394
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 1 cut(s) 344
BspLI GGNNCC 3 cut(s) 6, 150, 484
BspPI GGATC 3 cut(s) 143, 156, 364
BspT107I GGYRCC 2 cut(s) 4, 482
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 415
BssECI CCNNGG 2 cut(s) 34, 478
BssMI GATC 5 cut(s) 58, 148, 153, 356, 394
BssT1I CCWWGG 2 cut(s) 34, 478
BstAUI TGTACA 1 cut(s) 415
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 5 cut(s) 61, 151, 156, 359, 397
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 5 cut(s) 58, 148, 153, 356, 394
BstNSI RCATGY 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 148, 356
BstYI RGATCY 2 cut(s) 148, 356
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
CfoI GCGC 1 cut(s) 118
Csp6I GTAC 4 cut(s) 5, 247, 416, 483
CviAII CATG 3 cut(s) 35, 218, 409
CviJI RGCY 5 cut(s) 81, 97, 108, 300, 504
CviKI_1 RGCY 5 cut(s) 81, 97, 108, 300, 504
CviQI GTAC 4 cut(s) 5, 247, 416, 483
DpnI GATC 5 cut(s) 60, 150, 155, 358, 396
DpnII GATC 5 cut(s) 58, 148, 153, 356, 394
Eco130I CCWWGG 2 cut(s) 34, 478
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 34, 478
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 2 cut(s) 34, 478
FaeI CATG 3 cut(s) 38, 221, 412
FaiI YATR 9 cut(s) 36, 187, 219, 252, 323, 377, 410, 492, 514
FatI CATG 3 cut(s) 34, 217, 408
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 2 cut(s) 104, 484
HapII CCGG 1 cut(s) 291
HhaI GCGC 1 cut(s) 118
Hin1II CATG 3 cut(s) 38, 221, 412
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 3 cut(s) 100, 165, 431
HpaII CCGG 1 cut(s) 291
HphI GGTGA 2 cut(s) 58, 326
Hpy188I TCNGA 2 cut(s) 137, 153
Hpy188III TCNNGA 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 68, 269, 287, 329
Hsp92II CATG 3 cut(s) 38, 221, 412
HspAI GCGC 1 cut(s) 116
KpnI GGTACC 2 cut(s) 8, 486
Kzo9I GATC 5 cut(s) 58, 148, 153, 356, 394
LmnI GCTCC 4 cut(s) 123, 341, 503, 509
LpnPI CCDG 4 cut(s) 9, 21, 134, 304
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 2 cut(s) 316, 485
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 204
MalI GATC 5 cut(s) 60, 150, 155, 358, 396
MbiI CCGCTC 1 cut(s) 344
MboI GATC 5 cut(s) 58, 148, 153, 356, 394
MboII GAAGA 2 cut(s) 68, 76
MflI RGATCY 2 cut(s) 148, 356
MhlI GDGCHC 2 cut(s) 225, 302
MluCI AATT 2 cut(s) 264, 366
MmeI TCCRAC 2 cut(s) 236, 253
MnlI CCTC 4 cut(s) 119, 247, 340, 484
MroXI GAANNNNTTC 1 cut(s) 240
MspI CCGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 34
NdeII GATC 5 cut(s) 58, 148, 153, 356, 394
NlaIII CATG 3 cut(s) 38, 221, 412
NlaIV GGNNCC 3 cut(s) 6, 150, 484
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 3 cut(s) 100, 165, 431
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 1 cut(s) 107
PscI ACATGT 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 6, 150, 484
PsuI RGATCY 2 cut(s) 148, 356
RsaI GTAC 4 cut(s) 6, 248, 417, 484
RsaNI GTAC 4 cut(s) 5, 247, 416, 483
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 5 cut(s) 58, 148, 153, 356, 394
SduI GDGCHC 2 cut(s) 225, 302
SetI ASST 5 cut(s) 10, 316, 484, 506, 512
SfaNI GCATC 2 cut(s) 316, 485
Sse9I AATT 2 cut(s) 264, 366
SsiI CCGC 1 cut(s) 344
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 2 cut(s) 34, 478
TaqI TCGA 3 cut(s) 61, 75, 397
TaqII GACCGA 1 cut(s) 296
TasI AATT 2 cut(s) 264, 366
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 3 cut(s) 100, 165, 431
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 195, 444
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 218
XceI RCATGY 1 cut(s) 412
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.