RchiOBHm_Chr6g0297421
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000329
Physical Location & Seq
Forward (+)
59131243 .. 59132067
825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26694

Sequence Viewer

Length: 681 bp
ATGGTTGAAGGCGCCAAACTTGGATTGCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGACGAAGCTACTTCCTAAACTGAAGGAAAAACTTGGTTGTGAAATAAGTTTTAGTCATTACCAAAGTAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAACTTATGCGTCATAGTTCTGGATTTGGGTGGGATCCGATCACAAAGAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTTTAGGTGATGATACAGATGCCTCTACATTTGGAGCGGAAGAAAACGGACCTTGGGGAATTGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTGCAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAATGTAGATGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGGACTGACTATGAAAATAATAGCGGCTCAAAGGGGGCAACTAGTCAGGCTGAGGTTTTAGAAAACTTATCAAGTGGCATTGAGAGAATCAAGAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

226

Amino Acids

25.14

Weight (kDa)

5.83

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 5.6e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 11, 530
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 401
AciI CCGC 2 cut(s) 401, 603
AclWI GGATC 2 cut(s) 200, 213
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 275, 527
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 3 cut(s) 8, 259, 319
AhlI ACTAGT 1 cut(s) 620
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 200, 213
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 282
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 11, 530
BanII GRGCYC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 422, 511
BcoDI GTCTC 1 cut(s) 59
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 1 cut(s) 604
BlsI GCNGC 1 cut(s) 605
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 3 cut(s) 13, 207, 532
BmsI GCATC 2 cut(s) 373, 532
Bpu10I CCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 416, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 527
Bse1I ACTGG 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 416, 526
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 275, 527
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 11, 530
BslI CCNNNNNNNGG 2 cut(s) 275, 527
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 282, 359
Bsp143I GATC 3 cut(s) 205, 210, 442
BspACI CCGC 2 cut(s) 401, 603
BspCNI CTCAG 1 cut(s) 622
BspLI GGNNCC 3 cut(s) 13, 207, 532
BspPI GGATC 2 cut(s) 200, 213
BspT107I GGYRCC 2 cut(s) 11, 530
BsrBI CCGCTC 1 cut(s) 401
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 416, 526
BssMI GATC 3 cut(s) 205, 210, 442
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 2 cut(s) 416, 526
Bst4CI ACNGT 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 630
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 208, 213, 445
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 205, 210, 442
BstNSI RCATGY 1 cut(s) 460
BstSLI GKGCMC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 531
CviAII CATG 2 cut(s) 275, 457
CviJI RGCY 4 cut(s) 73, 357, 606, 629
CviKI_1 RGCY 4 cut(s) 73, 357, 606, 629
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 1 cut(s) 630
DinI GGCGCC 1 cut(s) 13
DpnI GATC 3 cut(s) 207, 212, 444
DpnII GATC 3 cut(s) 205, 210, 442
Eco130I CCWWGG 2 cut(s) 416, 526
Eco24I GRGCYC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 416, 526
EcoT38I GRGCYC 1 cut(s) 359
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 416, 526
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 278, 460
FaiI YATR 8 cut(s) 179, 186, 244, 276, 309, 458, 555, 591
FatI CATG 2 cut(s) 274, 456
Fnu4HI GCNGC 1 cut(s) 604
FokI GGATG 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 604
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 604
HaeII RGCGCY 1 cut(s) 15
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 278, 460
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 4 cut(s) 222, 479, 562, 666
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 210, 292
Hpy188III TCNNGA 3 cut(s) 192, 302, 670
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 326, 344, 466
HpyF3I CTNAG 1 cut(s) 630
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 278, 460
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
KpnI GGTACC 1 cut(s) 534
Kzo9I GATC 3 cut(s) 205, 210, 442
LmnI GCTCC 2 cut(s) 398, 550
LpnPI CCDG 5 cut(s) 177, 315, 333, 544, 611
LweI GCATC 2 cut(s) 373, 532
MaeI CTAG 1 cut(s) 621
MaeIII GTNAC 1 cut(s) 261
MalI GATC 3 cut(s) 207, 212, 444
MbiI CCGCTC 1 cut(s) 401
MboI GATC 3 cut(s) 205, 210, 442
MboII GAAGA 1 cut(s) 416
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 282, 359
MluCI AATT 3 cut(s) 163, 321, 423
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 488, 556
MmeI TCCRAC 2 cut(s) 293, 310
MnlI CCTC 4 cut(s) 304, 397, 532, 625
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 36, 147
MslI CAYNNNNRTG 1 cut(s) 461
NarI GGCGCC 1 cut(s) 12
NdeII GATC 3 cut(s) 205, 210, 442
NlaIII CATG 2 cut(s) 278, 460
NlaIV GGNNCC 3 cut(s) 13, 207, 532
NmuCI GTSAC 1 cut(s) 261
NspI RCATGY 1 cut(s) 460
PciI ACATGT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 222, 666
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 605
PleI GAGTC 2 cut(s) 487, 556
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 487, 556
PscI ACATGT 1 cut(s) 456
PshBI ATTAAT 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 13, 207, 532
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 2 cut(s) 36, 147
SatI GCNGC 1 cut(s) 604
Sau3AI GATC 3 cut(s) 205, 210, 442
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 2 cut(s) 488, 556
SduI GDGCHC 2 cut(s) 282, 359
SetI ASST 5 cut(s) 75, 373, 418, 532, 636
SfaNI GCATC 2 cut(s) 373, 532
SfoI GGCGCC 1 cut(s) 13
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 3 cut(s) 163, 321, 423
SsiI CCGC 2 cut(s) 401, 603
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 1 cut(s) 621
StyI CCWWGG 2 cut(s) 416, 526
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 445
TaqII GACCGA 1 cut(s) 276
TasI AATT 3 cut(s) 163, 321, 423
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 2 cut(s) 222, 666
Tru1I TTAA 2 cut(s) 36, 147
Tru9I TTAA 2 cut(s) 36, 147
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 252, 606
TspGWI ACGGA 2 cut(s) 426, 589
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 413
VspI ATTAAT 1 cut(s) 36
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.