RLG00000000925
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000329
Physical Location & Seq
Forward (+)
8064140 .. 8065148
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000925

Sequence Viewer

Length: 909 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAAGATTACAAAACTTGGAATGCTGAAGAGAGCAATGTTTTGCTTCAACTTATGGTTGAAAGAGCCAAACTTGGATTGCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGTGAAGCTACTTCCTAAACTGAAGGAAAAACTTGGTTATGAAATAAGTTTTAGTCATTACCAAAGTAGAGTGAAATGGTTTAAGAAACAATACACCAATTTCTCTCAACTTATGCGTCATAGTTCTGGATTTGGGTGGGATCCGATCACAAAGAGATTCACTGCTGATGATGAAGTATGGGCAGGTTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCGAGGTGATGATACAGATGCCACAACATTCGGAGTGGAAGAAAACGGACCTTGGGGAATTGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTGCAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAATGTACCAATGTAGAAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGGGCTGACTATGAAAATAATAGCGGCTCAAAGGGTGCAACTAGTCAGGCTGAGGTTTTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGATCTTTTGGATGCTATGAAGGAGACCCCAGGATTAACTGATGAGGCTTGCTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

303

Amino Acids

33.73

Weight (kDa)

6.03

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 15 - 112 4.7e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 356
AciI CCGC 1 cut(s) 684
AclWI GGATC 2 cut(s) 281, 294
AcsI RAATTY 1 cut(s) 768
AcuI CTGAAG 2 cut(s) 75, 188
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 77, 89, 340, 400
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 1 cut(s) 835
AluBI AGCT 2 cut(s) 154, 626
AluI AGCT 2 cut(s) 154, 626
Alw26I GTCTC 1 cut(s) 824
AlwI GGATC 2 cut(s) 281, 294
ApoI RAATTY 1 cut(s) 768
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 494
AsuHPI GGTGA 2 cut(s) 160, 464
AvaII GGWCC 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 711
BccI CCATC 2 cut(s) 503, 592
BciT130I CCWGG 1 cut(s) 837
BcoDI GTCTC 1 cut(s) 824
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 1 cut(s) 685
BlsI GCNGC 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 837
BmsI GCATC 2 cut(s) 454, 808
Bpu10I CCTNAGC 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 630
BsaI GGTCTC 1 cut(s) 824
BsaJI CCNNGG 2 cut(s) 497, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 2 cut(s) 497, 835
BseGI GGATG 2 cut(s) 346, 823
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 433
BseSI GKGCMC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 824
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 824
Bsp1286I GDGCHC 2 cut(s) 363, 440
Bsp143I GATC 4 cut(s) 286, 291, 523, 808
BspACI CCGC 1 cut(s) 684
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 281, 294
BspTNI GGTCTC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 497, 835
BssMI GATC 4 cut(s) 286, 291, 523, 808
BssT1I CCWWGG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 51, 782
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 2 cut(s) 346, 823
BstKTI GATC 4 cut(s) 289, 294, 526, 811
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 4 cut(s) 286, 291, 523, 808
BstNI CCWGG 1 cut(s) 837
BstNSI RCATGY 1 cut(s) 541
BstSCI CCNGG 1 cut(s) 835
BstSLI GKGCMC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtsCI GGATG 2 cut(s) 346, 823
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 856
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 356, 538
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 1 cut(s) 711
DpnI GATC 4 cut(s) 288, 293, 525, 810
DpnII GATC 4 cut(s) 286, 291, 523, 808
Eam1104I CTCTTC 2 cut(s) 51, 782
EarI CTCTTC 2 cut(s) 51, 782
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 1 cut(s) 440
Eco31I GGTCTC 1 cut(s) 824
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 2 cut(s) 75, 188
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 2 cut(s) 359, 541
FatI CATG 2 cut(s) 355, 537
Fnu4HI GCNGC 1 cut(s) 685
FokI GGATG 2 cut(s) 333, 830
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 1 cut(s) 685
FspBI CTAG 1 cut(s) 702
GluI GCNGC 1 cut(s) 685
HgaI GACGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 359, 541
HinfI GANTC 5 cut(s) 8, 303, 560, 643, 794
HphI GGTGA 2 cut(s) 160, 464
Hpy188I TCNGA 3 cut(s) 291, 373, 479
Hpy188III TCNNGA 5 cut(s) 273, 383, 798, 868, 906
HpyAV CCTTC 2 cut(s) 163, 820
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 4 cut(s) 407, 425, 547, 698
HpyF3I CTNAG 1 cut(s) 711
Hsp92II CATG 2 cut(s) 359, 541
Kzo9I GATC 4 cut(s) 286, 291, 523, 808
LmnI GCTCC 1 cut(s) 631
LpnPI CCDG 8 cut(s) 258, 315, 396, 414, 625, 692, 822, 849
LweI GCATC 2 cut(s) 454, 808
MaeI CTAG 1 cut(s) 702
MaeIII GTNAC 2 cut(s) 342, 751
MalI GATC 4 cut(s) 288, 293, 525, 810
MboI GATC 4 cut(s) 286, 291, 523, 808
MboII GAAGA 4 cut(s) 68, 497, 799, 894
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 363, 440
MluCI AATT 5 cut(s) 244, 402, 504, 747, 768
MlyI GAGTC 2 cut(s) 569, 637
MmeI TCCRAC 2 cut(s) 374, 391
MnlI CCTC 6 cut(s) 139, 385, 443, 613, 706, 844
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 5 cut(s) 117, 228, 779, 842, 878
MslI CAYNNNNRTG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 837
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 837
NdeII GATC 4 cut(s) 286, 291, 523, 808
NlaIII CATG 2 cut(s) 359, 541
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 342, 751
NspI RCATGY 1 cut(s) 541
PciI ACATGT 1 cut(s) 537
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 8, 303, 794
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 1 cut(s) 686
PleI GAGTC 2 cut(s) 568, 637
PpsI GAGTC 2 cut(s) 568, 637
PscI ACATGT 1 cut(s) 537
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 835
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 494
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 5 cut(s) 117, 228, 779, 842, 878
SatI GCNGC 1 cut(s) 685
Sau3AI GATC 4 cut(s) 286, 291, 523, 808
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 2 cut(s) 569, 637
ScrFI CCNGG 1 cut(s) 837
SduI GDGCHC 2 cut(s) 363, 440
SetI ASST 7 cut(s) 150, 156, 334, 454, 499, 628, 717
SfaNI GCATC 2 cut(s) 454, 808
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 5 cut(s) 244, 402, 504, 747, 768
SsiI CCGC 1 cut(s) 684
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 448, 526
TaqII GACCGA 1 cut(s) 357
TasI AATT 5 cut(s) 244, 402, 504, 747, 768
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 3 cut(s) 8, 303, 794
Tru1I TTAA 5 cut(s) 117, 228, 779, 842, 878
Tru9I TTAA 5 cut(s) 117, 228, 779, 842, 878
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 342, 751
Tsp45I GTSAC 2 cut(s) 342, 751
TspDTI ATGAA 4 cut(s) 201, 333, 687, 839
TspGWI ACGGA 2 cut(s) 507, 670
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 494
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 768
XceI RCATGY 1 cut(s) 541
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.