Rmu_sc0004453.1_g000001
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004453.1
OG0000329
Physical Location & Seq
Forward (+)
8418 .. 9152
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004453.1_g000001.1.cds

Sequence Viewer

Length: 618 bp
atgggatattcacaagggaatggtaaaagaaaggataacaaaacttggaacactgaagaaagcaacgttttgcttcaacttatggttgaaggcgccaaacttggattttgtgatattaatggtgtgataagcaaacaaacagtagaggcgaagctacttcctaaacttaaggaaaaacttggttatgaaataacttttagtcattaccaaagtagagtgaaatggtttaagaaacaatacaccaattactctcagcttatgcgccatagttctggatttgggtgggatccgatcacaaaaagattcactgctgatgatgaagtatgggcagattatttgaagcagcactgccgctctttcacgctcttgcctcagcggcaccgccgagctttcactctcttccctcagcacaaccccagagctttcacgctcttgcctaagtggcatccccgaggtttcatggtctttgcctcagcggcacgtcgagctttaacgctcttgcctcagcggcaaccctcgagctttcacgctcttgcctcagcggcatccccgagctttcacgctcttgcctcagtggcacccccgagctccacgctcacccctacccggcacccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

205

Amino Acids

23.46

Weight (kDa)

10.2

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 92, 378, 577, 609
AccBSI CCGCTC 1 cut(s) 354
AciI CCGC 6 cut(s) 352, 376, 382, 476, 508, 542
AclI AACGTT 1 cut(s) 66
AclWI GGATC 2 cut(s) 281, 294
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 606
AflII CTTAAG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 77, 89, 340
AjiI CACGTC 1 cut(s) 482
AluBI AGCT 8 cut(s) 154, 256, 389, 422, 488, 522, 555, 588
AluI AGCT 8 cut(s) 154, 256, 389, 422, 488, 522, 555, 588
Alw21I GWGCWC 1 cut(s) 590
AlwI GGATC 2 cut(s) 281, 294
Ama87I CYCGRG 4 cut(s) 450, 517, 550, 583
ApeKI GCWGC 1 cut(s) 343
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 2 cut(s) 95, 264
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 589
AvaI CYCGRG 4 cut(s) 450, 517, 550, 583
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 4 cut(s) 92, 378, 577, 609
BanII GRGCYC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 590
BbvCI CCTCAGC 5 cut(s) 372, 405, 472, 504, 538
BbvI GCAGC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 607
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 167
BglI GCCNNNNNGGC 6 cut(s) 376, 442, 476, 508, 542, 575
BisI GCNGC 6 cut(s) 344, 352, 377, 477, 509, 543
BlsI GCNGC 6 cut(s) 345, 353, 378, 478, 510, 544
Bme1390I CCNGG 1 cut(s) 607
BmeT110I CYCGRG 4 cut(s) 450, 517, 550, 583
BmgBI CACGTC 1 cut(s) 482
BmiI GGNNCC 5 cut(s) 94, 288, 380, 579, 611
BmrFI CCNGG 1 cut(s) 607
BmsI GCATC 2 cut(s) 454, 554
Bpu10I CCTNAGC 5 cut(s) 372, 405, 472, 504, 538
BpuMI CCSGG 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 2 cut(s) 445, 545
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 7 cut(s) 266, 386, 419, 486, 518, 552, 585
BseXI GCAGC 1 cut(s) 355
BshNI GGYRCC 4 cut(s) 92, 378, 577, 609
BsiHKAI GWGCWC 1 cut(s) 590
BsiHKCI CYCGRG 4 cut(s) 450, 517, 550, 583
BsiSI CCGG 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 606
BsoBI CYCGRG 4 cut(s) 450, 517, 550, 583
Bsp1286I GDGCHC 1 cut(s) 590
Bsp143I GATC 2 cut(s) 286, 291
BspACI CCGC 6 cut(s) 352, 376, 382, 476, 508, 542
BspCNI CTCAG 7 cut(s) 265, 385, 418, 485, 517, 551, 584
BspLI GGNNCC 5 cut(s) 94, 288, 380, 579, 611
BspPI GGATC 2 cut(s) 281, 294
BspT107I GGYRCC 4 cut(s) 92, 378, 577, 609
BspTI CTTAAG 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 286, 291
BssNI GRCGYC 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 167
BstDEI CTNAG 8 cut(s) 252, 372, 405, 438, 472, 504, 538, 571
BstF5I GGATG 2 cut(s) 445, 545
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 264
BstKTI GATC 2 cut(s) 289, 294
BstMBI GATC 2 cut(s) 286, 291
BstMWI GCNNNNNNNGC 7 cut(s) 376, 442, 476, 485, 508, 542, 575
BstSCI CCNGG 1 cut(s) 605
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 1 cut(s) 286
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 445, 545
BtsI GCAGTG 2 cut(s) 306, 346
BtsIMutI CAGTG 4 cut(s) 51, 306, 346, 579
CfoI GCGC 2 cut(s) 95, 264
CviAII CATG 1 cut(s) 460
CviJI RGCY 8 cut(s) 154, 256, 389, 422, 488, 522, 555, 588
CviKI_1 RGCY 8 cut(s) 154, 256, 389, 422, 488, 522, 555, 588
DdeI CTNAG 8 cut(s) 252, 372, 405, 438, 472, 504, 538, 571
DinI GGCGCC 1 cut(s) 94
DpnI GATC 2 cut(s) 288, 293
DpnII GATC 2 cut(s) 286, 291
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 4 cut(s) 450, 517, 550, 583
EcoICRI GAGCTC 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 590
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 1 cut(s) 463
FaiI YATR 6 cut(s) 83, 186, 260, 267, 325, 461
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 6 cut(s) 344, 352, 377, 477, 509, 543
FokI GGATG 2 cut(s) 432, 532
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 6 cut(s) 344, 352, 377, 477, 509, 543
GlaI GCGC 2 cut(s) 94, 263
GluI GCNGC 6 cut(s) 344, 352, 377, 477, 509, 543
HaeII RGCGCY 1 cut(s) 96
HapII CCGG 1 cut(s) 607
HhaI GCGC 2 cut(s) 95, 264
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 463
Hin6I GCGC 2 cut(s) 93, 262
HinP1I GCGC 2 cut(s) 93, 262
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 607
HphI GGTGA 1 cut(s) 589
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 66, 481
HpyF10VI GCNNNNNNNGC 7 cut(s) 376, 442, 476, 485, 508, 542, 575
HpyF3I CTNAG 8 cut(s) 252, 372, 405, 438, 472, 504, 538, 571
HpySE526I ACGT 2 cut(s) 66, 481
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 463
HspAI GCGC 2 cut(s) 93, 262
KasI GGCGCC 1 cut(s) 92
Kzo9I GATC 2 cut(s) 286, 291
LmnI GCTCC 1 cut(s) 593
LpnPI CCDG 2 cut(s) 258, 430
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 454, 554
MaeII ACGT 2 cut(s) 66, 481
MalI GATC 2 cut(s) 288, 293
MbiI CCGCTC 1 cut(s) 354
MboI GATC 2 cut(s) 286, 291
MboII GAAGA 2 cut(s) 68, 391
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 1 cut(s) 244
Mly113I GGCGCC 1 cut(s) 93
MnlI CCTC 9 cut(s) 139, 381, 414, 446, 481, 513, 526, 547, 580
MseI TTAA 4 cut(s) 117, 168, 228, 491
MspA1I CMGCKG 4 cut(s) 376, 476, 508, 542
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 1 cut(s) 607
MspR9I CCNGG 1 cut(s) 607
MwoI GCNNNNNNNGC 7 cut(s) 376, 442, 476, 485, 508, 542, 575
NarI GGCGCC 1 cut(s) 93
NciI CCSGG 1 cut(s) 607
NdeII GATC 2 cut(s) 286, 291
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 5 cut(s) 94, 288, 380, 579, 611
NmeAIII GCCGAG 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 517
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 6 cut(s) 345, 353, 378, 478, 510, 544
PluTI GGCGCC 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 590
Psp1406I AACGTT 1 cut(s) 66
PspN4I GGNNCC 5 cut(s) 94, 288, 380, 579, 611
PspXI VCTCGAGB 1 cut(s) 517
PsuI RGATCY 1 cut(s) 286
SacI GAGCTC 1 cut(s) 590
SaqAI TTAA 4 cut(s) 117, 168, 228, 491
SatI GCNGC 6 cut(s) 344, 352, 377, 477, 509, 543
Sau3AI GATC 2 cut(s) 286, 291
ScrFI CCNGG 1 cut(s) 607
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 2 cut(s) 454, 554
SfoI GGCGCC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 517
SlaI CTCGAG 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 167, 517
SmoI CTYRAG 2 cut(s) 167, 517
Sse9I AATT 1 cut(s) 244
SsiI CCGC 6 cut(s) 352, 376, 382, 476, 508, 542
SspDI GGCGCC 1 cut(s) 92
SstI GAGCTC 1 cut(s) 590
StyD4I CCNGG 1 cut(s) 605
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 69, 484
TaqI TCGA 2 cut(s) 484, 518
TasI AATT 1 cut(s) 244
TauI GCSGC 5 cut(s) 354, 379, 479, 511, 545
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 4 cut(s) 117, 168, 228, 491
Tru9I TTAA 4 cut(s) 117, 168, 228, 491
TscAI CASTG 4 cut(s) 58, 313, 353, 579
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 201, 333, 448
TspRI CASTG 4 cut(s) 58, 313, 353, 579
Vha464I CTTAAG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.