Rorug01G0168700
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000329
Physical Location & Seq
Forward (+)
23010382 .. 23011320
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0168700.1

Sequence Viewer

Length: 939 bp
ATGGAGGAGATTCCTGGCCTGAGGTTCTGCCCCATGGAAGATGAACTAGTTCTCTTCTACCTCAAGCCCATGTTGAGCGGACAGATCGTGCCCGGCAGAAACCGCGTGGTGTTCGACTGCGACCTCTACGGTCACCAAGAACCTTGGGAGATATGGGAGGCCTTCAAGACCAAAAGACCACACGACTTGAGGCTCAACAAGGACATTTACTTCTTCACCCAACACAAGAAGATGAGTTCCACAACCAAGCGCGTACGCCGGAATGTTGGAAGTGGCACCTGGAAGGGCGATGACTCCGGCAAGCCAGTACGATCTGTTGAAACTGGTCGTGTTGTTGGCTTGAAGAAAAGATATACTTACAAGAACCATGACTCGGTTCACAACGGCTGTTGGATCTTGTATGAGTTCTACCTTGATCAATCACTCAGAGACAATAAACAAAAGCTGGAAGACTGTGTTCTTTGTCTACTACGAAAGAATGGTGAACCCAAAACCAAGATCGAAAAGAAGAGAAAGCAACGTGAAGAGGAAGAGGTTCTTGAAAACAATTATGTCTTTCATGATGGAGAAAAATCGAAAAGGGAGCAAGAAGAGTTGCTTGAGCCACAAGCGAAGCGGCAACGAACGGTGCCATCCATTGGTAATGCACCACTAACAATGCCATCAGAAGATGATGCTGCATTCGCAGCTGAACTAGAAGAGTCATTGGAATGCTTTGAAGATGATAATGCACCCTCAGAAGCTCGAGCAATTGGCTTTCAAGGTGGGGAGAATGGTGGACTCCAACAATTAGCAGCCGAGGTGCAATCAGGCCCTTCATTTGTAGACGATCATGGAATATTTAATCCGCTGCCGGAGGAAGACTTTCTCTTGGCGGAAATGTTAGAAGAAATGGGTATGGCGGGCATGGAAGAACTAGTTCTTATTGATGTCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

312

Amino Acids

35.85

Weight (kDa)

5.04

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 137 5.4e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 275, 628
AccB7I CCANNNNNTGG 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 78
AccI GTMKAC 2 cut(s) 466, 825
AccII CGCG 2 cut(s) 105, 252
AciI CCGC 6 cut(s) 78, 103, 616, 848, 875, 902
AclWI GGATC 1 cut(s) 401
AfaI GTAC 2 cut(s) 255, 309
AfiI CCNNNNNNNGG 2 cut(s) 373, 638
AgsI TTSAA 6 cut(s) 166, 320, 343, 542, 719, 761
AhlI ACTAGT 2 cut(s) 46, 916
AjnI CCWGG 2 cut(s) 13, 278
AluBI AGCT 3 cut(s) 445, 689, 743
AluI AGCT 3 cut(s) 445, 689, 743
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 3 cut(s) 16, 159, 811
ApeKI GCWGC 4 cut(s) 677, 686, 794, 850
Asp700I GAANNNNTTC 4 cut(s) 48, 534, 864, 918
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 812
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 4 cut(s) 125, 208, 494, 925
AvaI CYCGRG 1 cut(s) 744
AxyI CCTNAGG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 275, 628
BbsI GAAGAC 2 cut(s) 456, 867
BbvI GCAGC 4 cut(s) 664, 698, 806, 837
BccI CCATC 3 cut(s) 557, 640, 670
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 15, 280
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 423
BcuI ACTAGT 2 cut(s) 46, 916
BfaI CTAG 4 cut(s) 47, 695, 917, 937
BisI GCNGC 5 cut(s) 617, 678, 687, 795, 851
BlsI GCNGC 5 cut(s) 618, 679, 688, 796, 852
Bme1390I CCNGG 3 cut(s) 15, 93, 280
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 1 cut(s) 812
BmiI GGNNCC 2 cut(s) 277, 630
BmrFI CCNGG 3 cut(s) 15, 93, 280
BmsI GCATC 1 cut(s) 664
BpiI GAAGAC 2 cut(s) 456, 867
BpuEI CTTGAG 3 cut(s) 47, 208, 620
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 3 cut(s) 33, 143, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 638
Bse1I ACTGG 2 cut(s) 305, 328
Bse21I CCTNAGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 15, 280
BseDI CCNNGG 3 cut(s) 33, 143, 798
BseGI GGATG 1 cut(s) 632
BseLI CCNNNNNNNGG 2 cut(s) 373, 638
BseMII CTCAG 3 cut(s) 11, 439, 750
BseNI ACTGG 2 cut(s) 305, 328
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 4 cut(s) 664, 698, 806, 837
Bsh1236I CGCG 2 cut(s) 105, 252
BshFI GGCC 3 cut(s) 18, 161, 813
BshNI GGYRCC 2 cut(s) 275, 628
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 4 cut(s) 93, 259, 297, 854
BsiWI CGTACG 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 373, 638
BsmAI GTCTC 1 cut(s) 423
BsmI GAATGC 2 cut(s) 680, 716
BsnI GGCC 3 cut(s) 18, 161, 813
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 6 cut(s) 84, 311, 393, 415, 498, 829
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 6 cut(s) 78, 103, 616, 848, 875, 902
BspANI GGCC 3 cut(s) 18, 161, 813
BspCNI CTCAG 3 cut(s) 12, 438, 749
BspFNI CGCG 2 cut(s) 105, 252
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 277, 630
BspPI GGATC 1 cut(s) 401
BspT107I GGYRCC 2 cut(s) 275, 628
BsrBI CCGCTC 1 cut(s) 78
BsrI ACTGG 2 cut(s) 305, 328
BssECI CCNNGG 3 cut(s) 33, 143, 798
BssMI GATC 6 cut(s) 84, 311, 393, 415, 498, 829
BssT1I CCWWGG 2 cut(s) 33, 143
Bst2UI CCWGG 2 cut(s) 15, 280
Bst4CI ACNGT 3 cut(s) 131, 455, 628
Bst6I CTCTTC 6 cut(s) 59, 503, 519, 525, 585, 693
BstC8I GCNNGC 2 cut(s) 302, 904
BstDEI CTNAG 3 cut(s) 20, 425, 736
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 1 cut(s) 632
BstFNI CGCG 2 cut(s) 105, 252
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 6 cut(s) 87, 314, 396, 418, 501, 832
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 6 cut(s) 84, 311, 393, 415, 498, 829
BstMWI GCNNNNNNNGC 3 cut(s) 102, 683, 686
BstNI CCWGG 2 cut(s) 15, 280
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 3 cut(s) 13, 91, 278
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 2 cut(s) 105, 252
BstV1I GCAGC 4 cut(s) 664, 698, 806, 837
BstV2I GAAGAC 2 cut(s) 456, 867
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 3 cut(s) 18, 161, 813
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 632
Cac8I GCNNGC 2 cut(s) 302, 904
CciI TCATGA 1 cut(s) 559
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 812
Csp6I GTAC 2 cut(s) 254, 308
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 6 cut(s) 34, 70, 368, 560, 833, 907
CviQI GTAC 2 cut(s) 254, 308
DdeI CTNAG 3 cut(s) 20, 425, 736
DpnI GATC 6 cut(s) 86, 313, 395, 417, 500, 831
DpnII GATC 6 cut(s) 84, 311, 393, 415, 498, 829
Eam1104I CTCTTC 6 cut(s) 59, 503, 519, 525, 585, 693
EarI CTCTTC 6 cut(s) 59, 503, 519, 525, 585, 693
EciI GGCGGA 1 cut(s) 890
Eco130I CCWWGG 2 cut(s) 33, 143
Eco147I AGGCCT 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 744
Eco91I GGTNACC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 812
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 13, 278
EcoT14I CCWWGG 2 cut(s) 33, 143
ErhI CCWWGG 2 cut(s) 33, 143
FaeI CATG 6 cut(s) 37, 73, 371, 563, 836, 910
FalI AAGNNNNNCTT 6 cut(s) 340, 372, 522, 554, 582, 614
FatI CATG 6 cut(s) 33, 69, 367, 559, 832, 906
FauI CCCGC 1 cut(s) 895
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 2 cut(s) 466, 825
Fnu4HI GCNGC 5 cut(s) 617, 678, 687, 795, 851
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 5 cut(s) 617, 678, 687, 795, 851
FspBI CTAG 4 cut(s) 47, 695, 917, 937
GlaI GCGC 1 cut(s) 251
GluI GCNGC 5 cut(s) 617, 678, 687, 795, 851
HaeIII GGCC 3 cut(s) 18, 161, 813
HapII CCGG 4 cut(s) 93, 259, 297, 854
HhaI GCGC 1 cut(s) 252
Hin1II CATG 6 cut(s) 37, 73, 371, 563, 836, 910
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HinfI GANTC 5 cut(s) 10, 293, 371, 701, 780
HpaII CCGG 4 cut(s) 93, 259, 297, 854
HphI GGTGA 4 cut(s) 125, 208, 494, 925
Hpy166II GTNNAC 5 cut(s) 379, 467, 485, 779, 826
Hpy188I TCNGA 3 cut(s) 428, 667, 739
Hpy188III TCNNGA 3 cut(s) 166, 539, 560
Hpy8I GTNNAC 5 cut(s) 379, 467, 485, 779, 826
HpyAV CCTTC 3 cut(s) 172, 277, 825
HpyCH4III ACNGT 3 cut(s) 131, 455, 628
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 4 cut(s) 647, 680, 731, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 683, 686
HpyF3I CTNAG 3 cut(s) 20, 425, 736
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 6 cut(s) 37, 73, 371, 563, 836, 910
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 6 cut(s) 84, 311, 393, 415, 498, 829
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 4 cut(s) 664, 698, 806, 837
LweI GCATC 1 cut(s) 664
MaeI CTAG 4 cut(s) 47, 695, 917, 937
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 2 cut(s) 131, 931
MalI GATC 6 cut(s) 86, 313, 395, 417, 500, 831
MbiI CCGCTC 1 cut(s) 78
MboI GATC 6 cut(s) 84, 311, 393, 415, 498, 829
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 547, 750, 788
MlyI GAGTC 4 cut(s) 287, 365, 710, 774
MmeI TCCRAC 3 cut(s) 247, 371, 808
MroXI GAANNNNTTC 4 cut(s) 48, 534, 864, 918
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 1 cut(s) 709
MspA1I CMGCKG 2 cut(s) 689, 850
MspI CCGG 4 cut(s) 93, 259, 297, 854
MspR9I CCNGG 3 cut(s) 15, 93, 280
MunI CAATTG 1 cut(s) 750
Mva1269I GAATGC 2 cut(s) 680, 716
MvaI CCWGG 2 cut(s) 15, 280
MvnI CGCG 2 cut(s) 105, 252
MwoI GCNNNNNNNGC 3 cut(s) 102, 683, 686
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 1 cut(s) 33
NdeII GATC 6 cut(s) 84, 311, 393, 415, 498, 829
NlaIII CATG 6 cut(s) 37, 73, 371, 563, 836, 910
NlaIV GGNNCC 2 cut(s) 277, 630
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 2 cut(s) 131, 931
PaeR7I CTCGAG 1 cut(s) 744
PagI TCATGA 1 cut(s) 559
PceI AGGCCT 1 cut(s) 161
PctI GAATGC 2 cut(s) 680, 716
PdmI GAANNNNTTC 4 cut(s) 48, 534, 864, 918
PfeI GAWTC 1 cut(s) 10
Pfl23II CGTACG 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 5 cut(s) 618, 679, 688, 796, 852
PleI GAGTC 4 cut(s) 287, 365, 709, 774
PpsI GAGTC 4 cut(s) 287, 365, 709, 774
Psp6I CCWGG 2 cut(s) 13, 278
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 13, 278
PspLI CGTACG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 277, 630
PspPI GGNCC 1 cut(s) 812
PspXI VCTCGAGB 1 cut(s) 744
PsuI RGATCY 1 cut(s) 393
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 2 cut(s) 255, 309
RsaNI GTAC 2 cut(s) 254, 308
RseI CAYNNNNRTG 1 cut(s) 709
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 5 cut(s) 617, 678, 687, 795, 851
Sau3AI GATC 6 cut(s) 84, 311, 393, 415, 498, 829
Sau96I GGNCC 1 cut(s) 812
SchI GAGTC 4 cut(s) 287, 365, 710, 774
ScrFI CCNGG 3 cut(s) 15, 93, 280
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 1 cut(s) 664
Sfr274I CTCGAG 1 cut(s) 744
SlaI CTCGAG 1 cut(s) 744
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 4 cut(s) 62, 187, 599, 744
SmoI CTYRAG 4 cut(s) 62, 187, 599, 744
SpeI ACTAGT 2 cut(s) 46, 916
Sse9I AATT 3 cut(s) 547, 750, 788
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 6 cut(s) 78, 103, 616, 848, 875, 902
SspI AATATT 1 cut(s) 840
SspMI CTAG 4 cut(s) 47, 695, 917, 937
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 13, 91, 278
StyI CCWWGG 2 cut(s) 33, 143
TaaI ACNGT 3 cut(s) 131, 455, 628
TaiI ACGT 1 cut(s) 523
TaqI TCGA 4 cut(s) 114, 501, 575, 745
TasI AATT 3 cut(s) 547, 750, 788
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TseFI GTSAC 2 cut(s) 131, 931
TseI GCWGC 4 cut(s) 677, 686, 794, 850
Tsp45I GTSAC 2 cut(s) 131, 931
TspDTI ATGAA 3 cut(s) 57, 548, 807
Van91I CCANNNNNTGG 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 744
XmiI GTMKAC 2 cut(s) 466, 825
XmnI GAANNNNTTC 4 cut(s) 48, 534, 864, 918
XspI CTAG 4 cut(s) 47, 695, 917, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.