Rorug05G0150800
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000329
Physical Location & Seq
Forward (+)
13958385 .. 13972723
14339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0150800.1

Sequence Viewer

Length: 4146 bp
ATGGCGAAATCGAGACAACATTTCTCTAGCCAAGATACATCGTTGTCACCCACTTCTGTGAGATCAAGAGAGTGGGAGGGTCCATCGAGATGGACTGAGTACTTGGGTCCAGAACCAACTTCGCCCATGACATCTAGGAGCTCCAGGAATGCAGGTCCCGACGGGCAGATCCAAAGTTCAGGCGGGTCCCACAAAGGTTTAAACATGCAGTGGGTAGTTCAACTAACTGAAGTAGCAGAAGGTCTTATGGCTAAAATGTATAGGTTAAACCAAACTTTGGATTACCCGGATCCAGTTGGCCATACATTTTCAGAAGCATTTTGGAAAGCCGGTGTGTTCCCCAACCATCCAAGACTTTGCTTGCTACTTTCAAAGAAGTTCCCGGAGCATTATAGCAAGTTACAGCTTGAACGTGTTGATAAGGTTGCCTTGGACGCCTTGCATGGTAATGCAGAGCTTCATTTACAAAGCCTGGAACCATGGGTTCAGCTGCTTCTTGACTTGATGGCATTTCGAGAACAAGCTCTACGGCTTATATTGGATCTAAGCAGTACTGTTATTACCTTGTTGCCTCACCAGAACTCGCTTATACTACATGCATTTATGGATCTCTTCTGTTCATTTGTCCGTGTTAACCTATTTTCCGAGAAGGTACCGAGGAAAATGATGCTACAAATGTATAACCTTTTGCATGCGATATCAAGAAATGACCGAGATTGTGATTTCTATCATCGGTTGGTTCAATTTATAGACAGTTATGATCCACCCTTGAAAGGATTAAAAGAAGACCTAAATTTTGTGAGCCCCCGAATTGGAGAGGTGCTAGAGGCTGTGGGTCCTATTATTTTTCTATCAACAGATACAAGAAAGCTCCGAAATGAGGGATTCTTAAGTCCATATCATCCTCGATATCCAGACATACTTACAAATTCTGCACACCCAATGAGAGCTCAGGATTTAGCAAATGTCACCTCATATCGGGAATGGGTATTATTTGGGTACCTTGTTTGTCCAGATGAGCTTCTTCGCGTCACTAGCATTGATATTGCTCTGGTCGTCTTGAAAGAAAATTTAGTTCTTACATTGTTCAGGGATGAGTACATACTTTTGCATGAAGATTATCAGCTATTTGTCCTGCCTCGAATTTTAGAGTCAAAGAAGATGGCAAAATCTGGACGTACAAAGCAAAAAGAAGCAGATTTGGAGTATAGTGTCGCAAAGCAAGTTGAGAAAATGATAAGTGAAGTGCATGAGCAAGCATTACTATCATGTGATGCCATCCACCGTGAGCGGAGGATATTACTGAAGCAAGAGATTGGAAGAATGGTACTTTTTTTCACTGATCAGCCTAGTTTGTTGGCTCCAAACATACAGATGGTATTCTCTGCCCTGGCTTTTGCTCAATGTGAAGTCCTCTGGTATTTCCAACATGTTGGAATTGCATCATCAAAATCTAAAGCTGTTCGAATGGTGTCAGTTGAAATAGATCCAAGTGATCCAACTATTGGGTTTTTGTTAGATGGAATGGACCATCTTTGCTGTTTGGTACGCAAGTATATTGCAGCAATTCGAGGTTATGCATTATCATACCTTTCTTCTTCTGCTGGTAGAATCCGGTTTTTGTTGAATACTCCTGGGATGGTGGCTCTTGACTTAGATGCAAGCTTGAAAAGTCTTTTTCAGAAGATTGTTCAGCACCTTGAGAACATACCAAAACCACAGGGTGAAAATGTATCTGCCATTACATGTGATCTATCTGAATTTCGAAAGGACTGGTTATCAATATTGATGATAGTCACATCATCCCGGTCATCTATAAACATAAGACATTTGGAGAAAGCTACAGTCTCTACAGGGAAAGAAGGCTTACTATCAGAGGGAAATGCTGCCTACAATTGGTCCAGATGTGTCGATGAACTGGAATCTCAATTATCAAAGCATGCGAGTCTTAAGAAGTTGTATTTCTACCATCAGCACCTTACAGCGGTATTCAGGAACACTATGTTTGGCCCAGAAGGGCGCCCACAACATTGCTGTGCATGGCTTGGTGTTGCAAGTAGTTTTCCAGAGTGTGCTTCGCCAATTGTTCTGGAAGAGGTAACCAAGATAGGCAGAGATGCAGTCCTTTATGTTGAATCTCTCATTGAATCTATAATGGGAGGGCTGGAGGGATTAATTAACATCCTAGATTCTGATGGAGGATTTGGTGCGCTAGAGACCCAGCTTCTTCCAGAGCAGGCAGCTTCTTATATGAACTATGTATCAAGAATGTCAATTACTTCAACTAAATCTCCAAAGGGAGCACCTGGTTTCCCTTTGCCTGGCCATGAGAGTCGTCCCGAAAATAATGCTTCTATCAAGATGTTAGAAGCTGCGGTGCAGAGATTGACCAACTTATGCTCAGTTTTGAATGATATGGAGCCTATATGTGTTCTAAACCATGTTTTTGTCTTAAGGGAGTACATGAGAGAGTGCATTCTTGGGAACCTTAGGAGGAGATTGCTTGCGGTACTGAAAACTGACAATGACCTCCAACGGCCTACAGTTCTTGAGTCGCTTATTCGCAGACACATCAGCATTATCCATCTGGCAGAGCAGCATATTAGCATGGACTTAACTCAGGGTATTCGAGAAGTTTTGCTCTCAGAGGCCTTCTCAGGACCAGTTTCTTCTTTGCATTTGTTTGAAAAACCAGAAGAGCAACATACAGGATCGGCCACTGAAGCTGTCTGCAACTGGTACATTGAAAATATAATCAAGGATATATCAGGTGCTGGAATCCTTTTTGCTCCAATTCACAAATGCTTCAAGAGCACAAGGCCTGTTGGCGGATATTTTGCTGATTCAGTCACTGATCCAAGAGAATTGAAGGCATTTGCTCGCATCTTTGGTGGCTATGGAGTTGACAGGCTAGACAGAATGCTGAAAGAACACACTGCTGCACTTTTAAATTGTATTGACACATCACTGAGATCAAATCGTGATGTGCTAGAGGCAGTTGCTGGTAGCCTGCATTCTGGAGACCGTATAGAAAGAGAGGCTTTAATAAAGCAGATGGTCGATATAGACACGGTGATTGGGTTTTGTGTTCAAGCTGGCTTGGCCCTGGCTTTTGACAAACTTCTAGCTGAAGCTTCTGGCACTGTACTCTTTGAAGGTGCACCCTTGATACATTCATTATTAGCTGGAATATCTAAGCATATACCTGAAGAAATACCTGAAAAGAAAGAAGTCAGGAGATTGAGAGGGGTGGCAAACAACGTTGGTGTAGTCGATAATCATGATTCCCAGTGGGTGAGATTGATCTTAGAAGAGGTTGGGGGTGCAAATGATGGGTCCTGGAGCCTGTTACCCTATTTCTTTGCCACCTTCATGACATCTAATATATGGACTACCACAGCCTTCAACGTGGACACTGGGGGATTCAATAACAATATCCATTGCTTAGCAAGGTGCGTCAGTGCTGTAATTGCAGGAAGTGAGTCCGTTAGAGTGGAACGTGAATATCAGCAAAGACAATCTCTCTCAAATGGCCATGTTGGTGAATCAGTGGACTCTGAAATACAAAATCGTTTGTCAGCTGAAGCTAGCATAAAATCCACAATGCAGCTTTTCGTCAAATTCTCTGCAAGCATTATACTGGATTCTTGGAGTGAAACTAACAGATCTCATCTTGTAGCACAGCTAATTTTCCTGGACCAACTCTGCGAGATCTCACCTTATCTTCCAAGAAGCTCTCTGGAACCCCATGTTCCATATGCCATTCTTCGTTCAATATACAGCCAGTATTATACAAACTCTCCAAATACACCACTTGCATTACTAAGCATTTCACCCCGCCATTCGCCTGCTGTATCACTCTCACATGCATCTCCTGCAGCACGACAACCCCGTGGTGACTCCACTCCTCAGTATGATTCAGGTTATTTCAAGGGATCATCATCCCATGGCCAAGAGCACATTTATGATGGTGGAAGTTCACGAAGCACTGAAAACAGGCAACAGAACTTTCGCCGTTCTGGGCCTTTGGATTATGGCTCAAGCCGAAAAGTTAAGTTTGTGGAGGGCTCAACTTCAGGGAACAGTGGTCCCAGCCCACTACCAAGATTTGCCGTCTCAAGGTCGGGTCCAATATCGTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

1381

Amino Acids

154.41

Weight (kDa)

6.5

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nckap1 PF09735 75 - 1265 0.0 Nck-associated protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
Acc65I GGTACC 2 cut(s) 652, 999
AccB1I GGYRCC 3 cut(s) 652, 999, 2019
AccB7I CCANNNNNTGG 2 cut(s) 277, 1505
AccBSI CCGCTC 1 cut(s) 1291
AccII CGCG 1 cut(s) 1029
AciI CCGC 7 cut(s) 183, 1291, 1985, 2375, 2507, 2829, 3838
AclI AACGTT 1 cut(s) 3261
AcoI YGGCCR 5 cut(s) 298, 2323, 2715, 3532, 3949
AcsI RAATTY 6 cut(s) 793, 928, 1069, 1143, 1760, 3620
AcuI CTGAAG 7 cut(s) 249, 1325, 2742, 3150, 3228, 3603, 4059
AcyI GRCGYC 2 cut(s) 435, 2020
AdeI CACNNNGTG 1 cut(s) 1724
AflII CTTAAG 3 cut(s) 889, 1949, 2452
AflIII ACRYGT 3 cut(s) 412, 1429, 1745
AjnI CCWGG 9 cut(s) 143, 471, 1389, 1633, 2305, 2320, 3105, 3338, 3693
AleI CACNNNNGTG 1 cut(s) 56
Alw21I GWGCWC 6 cut(s) 143, 952, 2305, 2816, 3163, 3960
Alw26I GTCTC 5 cut(s) 7, 1852, 2210, 3015, 4120
Alw44I GTGCAC 1 cut(s) 3159
AlwNI CAGNNNCTG 3 cut(s) 2774, 2852, 3002
ApaLI GTGCAC 1 cut(s) 3159
ApeKI GCWGC 9 cut(s) 490, 1562, 1886, 2240, 2372, 2596, 2939, 3607, 3878
ApoI RAATTY 6 cut(s) 793, 928, 1069, 1143, 1760, 3620
ArsI GACNNNNNNTTYG 4 cut(s) 779, 811, 3320, 3352
AseI ATTAAT 1 cut(s) 2174
Asp718I GGTACC 2 cut(s) 652, 999
AspLEI GCGC 2 cut(s) 2022, 2212
AsuC2I CCSGG 3 cut(s) 287, 383, 1807
AsuII TTCGAA 2 cut(s) 1465, 1765
AsuNHI GCTAGC 1 cut(s) 3587
AxyI CCTNAGG 1 cut(s) 2489
BaeGI GKGCMC 1 cut(s) 3163
BaeI ACNNNNGTAYC 2 cut(s) 1538, 1571
BalI TGGCCA 4 cut(s) 300, 2325, 3534, 3951
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 3 cut(s) 652, 999, 2019
BanII GRGCYC 4 cut(s) 143, 806, 952, 4070
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 6 cut(s) 143, 952, 2305, 2816, 3163, 3960
BbvI GCAGC 9 cut(s) 477, 1574, 1873, 2252, 2359, 2608, 2926, 3619, 3890
BceAI ACGGC 4 cut(s) 545, 2552, 3999, 4097
BcgI CGANNNNNNTGC 2 cut(s) 2330, 2364
BciT130I CCWGG 9 cut(s) 145, 473, 1391, 1635, 2307, 2322, 3107, 3340, 3695
BclI TGATCA 1 cut(s) 1342
BcnI CCSGG 3 cut(s) 287, 383, 1807
BcoDI GTCTC 5 cut(s) 7, 1852, 2210, 3015, 4120
BfmI CTRYAG 4 cut(s) 1842, 1851, 2541, 3876
BfoI RGCGCY 1 cut(s) 2023
BfrI CTTAAG 3 cut(s) 889, 1949, 2452
BfuAI ACCTGC 1 cut(s) 143
BglII AGATCT 2 cut(s) 3665, 3711
BisI GCNGC 9 cut(s) 491, 1563, 1887, 2241, 2373, 2597, 2940, 3608, 3879
BlpI GCTNAGC 1 cut(s) 3445
BlsI GCNGC 9 cut(s) 492, 1564, 1888, 2242, 2374, 2598, 2941, 3609, 3880
BmcAI AGTACT 2 cut(s) 101, 553
BmrI ACTGGG 2 cut(s) 3283, 3426
BmsI GCATC 7 cut(s) 657, 1264, 1451, 1648, 2107, 2892, 3878
BmtI GCTAGC 1 cut(s) 3591
BmuI ACTGGG 2 cut(s) 3283, 3426
BpiI GAAGAC 1 cut(s) 792
BplI GAGNNNNNCTC 2 cut(s) 2639, 2671
BpmI CTGGAG 4 cut(s) 127, 2186, 3039, 3361
Bpu10I CCTNAGC 1 cut(s) 951
Bpu1102I GCTNAGC 1 cut(s) 3445
Bpu14I TTCGAA 2 cut(s) 1465, 1765
BpuEI CTTGAG 4 cut(s) 1721, 2570, 4024, 4102
BpuMI CCSGG 3 cut(s) 287, 383, 1807
BsaBI GATNNNNATC 2 cut(s) 726, 3940
BsaHI GRCGYC 2 cut(s) 435, 2020
BsaI GGTCTC 2 cut(s) 2210, 3015
BsaJI CCNNGG 8 cut(s) 429, 479, 656, 1389, 1634, 3105, 3892, 3946
BsaWI WCCGGW 1 cut(s) 1614
BsaXI ACNNNNNCTCC 4 cut(s) 2275, 2305, 3784, 3814
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 9 cut(s) 293, 1778, 1923, 2663, 2741, 3289, 3421, 3645, 3784
Bse21I CCTNAGG 1 cut(s) 2489
Bse3DI GCAATG 2 cut(s) 2029, 3439
Bse8I GATNNNNATC 2 cut(s) 726, 3940
BseBI CCWGG 9 cut(s) 145, 473, 1391, 1635, 2307, 2322, 3107, 3340, 3695
BseDI CCNNGG 8 cut(s) 429, 479, 656, 1389, 1634, 3105, 3892, 3946
BseGI GGATG 8 cut(s) 346, 901, 1099, 1278, 1644, 1802, 2181, 3941
BseJI GATNNNNATC 2 cut(s) 726, 3940
BseMI GCAATG 2 cut(s) 2029, 3439
BseMII CTCAG 8 cut(s) 87, 965, 2415, 2633, 2658, 2670, 2960, 3923
BseNI ACTGG 9 cut(s) 293, 1778, 1923, 2663, 2741, 3289, 3421, 3645, 3784
BseRI GAGGAG 2 cut(s) 2509, 3897
BseSI GKGCMC 1 cut(s) 3163
BseXI GCAGC 9 cut(s) 477, 1574, 1873, 2252, 2359, 2608, 2926, 3619, 3890
BseYI CCCAGC 2 cut(s) 2220, 4091
BsgI GTGCAG 3 cut(s) 918, 2399, 2925
Bsh1236I CGCG 1 cut(s) 1029
BshNI GGYRCC 3 cut(s) 652, 999, 2019
BsiHKAI GWGCWC 6 cut(s) 143, 952, 2305, 2816, 3163, 3960
BsiSI CCGG 5 cut(s) 287, 330, 383, 1615, 1807
BslFI GGGAC 4 cut(s) 141, 172, 2322, 4074
BsmAI GTCTC 5 cut(s) 7, 1852, 2210, 3015, 4120
BsmBI CGTCTC 1 cut(s) 4120
BsmFI GGGAC 4 cut(s) 141, 172, 2322, 4074
BsmI GAATGC 4 cut(s) 154, 2475, 2925, 3013
Bso31I GGTCTC 2 cut(s) 2210, 3015
Bsp119I TTCGAA 2 cut(s) 1465, 1765
Bsp1286I GDGCHC 8 cut(s) 143, 806, 952, 2305, 2816, 3163, 3960, 4070
Bsp1720I GCTNAGC 1 cut(s) 3445
Bsp19I CCATGG 2 cut(s) 479, 3946
BspACI CCGC 7 cut(s) 183, 1291, 1985, 2375, 2507, 2829, 3838
BspCNI CTCAG 8 cut(s) 88, 964, 2414, 2632, 2657, 2669, 2961, 3922
BspFNI CGCG 1 cut(s) 1029
BspHI TCATGA 2 cut(s) 3280, 3372
BspMAI CTGCAG 1 cut(s) 3880
BspMI ACCTGC 1 cut(s) 143
BspOI GCTAGC 1 cut(s) 3591
BspQI GCTCTTC 1 cut(s) 2691
BspT104I TTCGAA 2 cut(s) 1465, 1765
BspT107I GGYRCC 3 cut(s) 652, 999, 2019
BspTI CTTAAG 3 cut(s) 889, 1949, 2452
BspTNI GGTCTC 2 cut(s) 2210, 3015
BsrBI CCGCTC 1 cut(s) 1291
BsrDI GCAATG 2 cut(s) 2029, 3439
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 9 cut(s) 293, 1778, 1923, 2663, 2741, 3289, 3421, 3645, 3784
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 8 cut(s) 429, 479, 656, 1389, 1634, 3105, 3892, 3946
BssNI GRCGYC 2 cut(s) 435, 2020
BssT1I CCWWGG 3 cut(s) 429, 479, 3946
Bst2UI CCWGG 9 cut(s) 145, 473, 1391, 1635, 2307, 2322, 3107, 3340, 3695
Bst4CI ACNGT 9 cut(s) 556, 755, 1286, 1846, 2545, 3026, 3073, 3145, 4085
Bst6I CTCTTC 4 cut(s) 617, 2088, 2691, 3306
BstACI GRCGYC 2 cut(s) 435, 2020
BstAFI CTTAAG 3 cut(s) 889, 1949, 2452
BstAPI GCANNNNNTGC 1 cut(s) 3875
BstBI TTCGAA 2 cut(s) 1465, 1765
BstDSI CCRYGG 3 cut(s) 479, 3892, 3946
BstEII GGTNACC 1 cut(s) 2098
BstF5I GGATG 8 cut(s) 346, 901, 1099, 1278, 1644, 1802, 2181, 3941
BstFNI CGCG 1 cut(s) 1029
BstH2I RGCGCY 1 cut(s) 2023
BstHHI GCGC 2 cut(s) 2022, 2212
BstMAI GTCTC 5 cut(s) 7, 1852, 2210, 3015, 4120
BstMWI GCNNNNNNNGC 7 cut(s) 434, 1035, 2723, 2811, 3101, 3470, 3875
BstNI CCWGG 9 cut(s) 145, 473, 1391, 1635, 2307, 2322, 3107, 3340, 3695
BstNSI RCATGY 7 cut(s) 208, 599, 695, 1433, 1749, 1943, 3869
BstPI GGTNACC 1 cut(s) 2098
BstSFI CTRYAG 4 cut(s) 1842, 1851, 2541, 3876
BstSLI GKGCMC 1 cut(s) 3163
BstUI CGCG 1 cut(s) 1029
BstV1I GCAGC 9 cut(s) 477, 1574, 1873, 2252, 2359, 2608, 2926, 3619, 3890
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 7 cut(s) 168, 289, 541, 607, 1486, 3665, 3711
BstXI CCANNNNNNTGG 2 cut(s) 90, 1433
BstYI RGATCY 7 cut(s) 168, 289, 541, 607, 1486, 3665, 3711
Bsu36I CCTNAGG 1 cut(s) 2489
BtgI CCRYGG 3 cut(s) 479, 3892, 3946
BtsCI GGATG 8 cut(s) 346, 901, 1099, 1278, 1644, 1802, 2181, 3941
BtsI GCAGTG 2 cut(s) 215, 2934
BveI ACCTGC 1 cut(s) 143
CaiI CAGNNNCTG 3 cut(s) 2774, 2852, 3002
CciI TCATGA 2 cut(s) 3280, 3372
CfoI GCGC 2 cut(s) 2022, 2212
Cfr10I RCCGGY 1 cut(s) 329
CseI GACGC 3 cut(s) 443, 1018, 3445
CsiI ACCWGGT 1 cut(s) 2305
DinI GGCGCC 1 cut(s) 2021
DraI TTTAAA 2 cut(s) 201, 2949
DraIII CACNNNGTG 1 cut(s) 1724
EaeI YGGCCR 5 cut(s) 298, 2323, 2715, 3532, 3949
Eam1104I CTCTTC 4 cut(s) 617, 2088, 2691, 3306
EarI CTCTTC 4 cut(s) 617, 2088, 2691, 3306
EciI GGCGGA 1 cut(s) 2844
Ecl136II GAGCTC 2 cut(s) 141, 950
Eco130I CCWWGG 3 cut(s) 429, 479, 3946
Eco147I AGGCCT 2 cut(s) 2651, 2821
Eco24I GRGCYC 4 cut(s) 143, 806, 952, 4070
Eco31I GGTCTC 2 cut(s) 2210, 3015
Eco32I GATATC 2 cut(s) 699, 911
Eco53kI GAGCTC 2 cut(s) 141, 950
Eco57I CTGAAG 7 cut(s) 249, 1325, 2742, 3150, 3228, 3603, 4059
Eco81I CCTNAGG 1 cut(s) 2489
Eco91I GGTNACC 1 cut(s) 2098
EcoICRI GAGCTC 2 cut(s) 141, 950
EcoO109I RGGNCCY 4 cut(s) 155, 186, 836, 3336
EcoO65I GGTNACC 1 cut(s) 2098
EcoRII CCWGG 9 cut(s) 143, 471, 1389, 1633, 2305, 2320, 3105, 3338, 3693
EcoRV GATATC 2 cut(s) 699, 911
EcoT14I CCWWGG 3 cut(s) 429, 479, 3946
EcoT22I ATGCAT 3 cut(s) 601, 1582, 3871
EcoT38I GRGCYC 4 cut(s) 143, 806, 952, 4070
EgeI GGCGCC 1 cut(s) 2021
EheI GGCGCC 1 cut(s) 2021
ErhI CCWWGG 3 cut(s) 429, 479, 3946
Esp3I CGTCTC 1 cut(s) 4120
FalI AAGNNNNNCTT 4 cut(s) 413, 445, 3025, 3057
FaqI GGGAC 4 cut(s) 141, 172, 2322, 4074
FauI CCCGC 2 cut(s) 176, 3845
FauNDI CATATG 1 cut(s) 3757
FbaI TGATCA 1 cut(s) 1342
Fnu4HI GCNGC 9 cut(s) 491, 1563, 1887, 2241, 2373, 2597, 2940, 3608, 3879
FokI GGATG 8 cut(s) 333, 888, 1106, 1265, 1651, 1789, 2168, 3928
FriOI GRGCYC 4 cut(s) 143, 806, 952, 4070
Fsp4HI GCNGC 9 cut(s) 491, 1563, 1887, 2241, 2373, 2597, 2940, 3608, 3879
GlaI GCGC 2 cut(s) 2021, 2211
GluI GCNGC 9 cut(s) 491, 1563, 1887, 2241, 2373, 2597, 2940, 3608, 3879
GsaI CCCAGC 2 cut(s) 2224, 4095
GsuI CTGGAG 4 cut(s) 127, 2186, 3039, 3361
HaeII RGCGCY 1 cut(s) 2023
HapII CCGG 5 cut(s) 287, 330, 383, 1615, 1807
HgaI GACGC 3 cut(s) 443, 1018, 3445
HhaI GCGC 2 cut(s) 2022, 2212
Hin1I GRCGYC 2 cut(s) 435, 2020
Hin6I GCGC 2 cut(s) 2020, 2210
HinP1I GCGC 2 cut(s) 2020, 2210
HincII GTYRAC 2 cut(s) 634, 2905
HindII GTYRAC 2 cut(s) 634, 2905
HindIII AAGCTT 2 cut(s) 1663, 3132
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 5 cut(s) 287, 330, 383, 1615, 1807
Hpy166II GTNNAC 6 cut(s) 634, 2905, 3161, 3412, 3553, 3980
Hpy188I TCNGA 9 cut(s) 313, 646, 875, 1683, 1759, 1876, 2194, 2647, 3559
Hpy8I GTNNAC 6 cut(s) 634, 2905, 3161, 3412, 3553, 3980
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 9 cut(s) 233, 643, 1856, 2009, 2662, 2863, 3149, 3379, 3412
HpyCH4III ACNGT 9 cut(s) 556, 755, 1286, 1846, 2545, 3026, 3073, 3145, 4085
HpyCH4IV ACGT 5 cut(s) 412, 1177, 3261, 3408, 3499
HpyF10VI GCNNNNNNNGC 7 cut(s) 434, 1035, 2723, 2811, 3101, 3470, 3875
HpySE526I ACGT 5 cut(s) 412, 1177, 3261, 3408, 3499
Hsp92I GRCGYC 2 cut(s) 435, 2020
HspAI GCGC 2 cut(s) 2020, 2210
KasI GGCGCC 1 cut(s) 2019
KflI GGGWCCC 1 cut(s) 186
KpnI GGTACC 2 cut(s) 656, 1003
Ksp22I TGATCA 1 cut(s) 1342
KspAI GTTAAC 1 cut(s) 634
LguI GCTCTTC 1 cut(s) 2691
LmnI GCTCC 9 cut(s) 138, 146, 385, 876, 1366, 2300, 2419, 2794, 3342
Lsp1109I GCAGC 9 cut(s) 477, 1574, 1873, 2252, 2359, 2608, 2926, 3619, 3890
LweI GCATC 7 cut(s) 657, 1264, 1451, 1648, 2107, 2892, 3878
MabI ACCWGGT 1 cut(s) 2305
MaeII ACGT 5 cut(s) 412, 1177, 3261, 3408, 3499
MaeIII GTNAC 9 cut(s) 45, 399, 967, 1030, 1795, 2098, 2848, 3348, 3896
MbiI CCGCTC 1 cut(s) 1291
MfeI CAATTG 2 cut(s) 1894, 2082
MflI RGATCY 7 cut(s) 168, 289, 541, 607, 1486, 3665, 3711
MhlI GDGCHC 8 cut(s) 143, 806, 952, 2305, 2816, 3163, 3960, 4070
MlsI TGGCCA 4 cut(s) 300, 2325, 3534, 3951
MluNI TGGCCA 4 cut(s) 300, 2325, 3534, 3951
Mly113I GGCGCC 1 cut(s) 2020
MlyI GAGTC 7 cut(s) 1160, 1954, 2341, 2561, 3491, 3548, 3893
MmeI TCCRAC 4 cut(s) 1414, 1450, 1523, 2557
Mox20I TGGCCA 4 cut(s) 300, 2325, 3534, 3951
Mph1103I ATGCAT 3 cut(s) 601, 1582, 3871
MscI TGGCCA 4 cut(s) 300, 2325, 3534, 3951
MslI CAYNNNNRTG 8 cut(s) 56, 88, 447, 1373, 2034, 3371, 3540, 3963
Msp20I TGGCCA 4 cut(s) 300, 2325, 3534, 3951
MspA1I CMGCKG 3 cut(s) 490, 1985, 3581
MspCI CTTAAG 3 cut(s) 889, 1949, 2452
MspI CCGG 5 cut(s) 287, 330, 383, 1615, 1807
MssI GTTTAAAC 1 cut(s) 201
MunI CAATTG 2 cut(s) 1894, 2082
Mva1269I GAATGC 4 cut(s) 154, 2475, 2925, 3013
MvaI CCWGG 9 cut(s) 145, 473, 1391, 1635, 2307, 2322, 3107, 3340, 3695
MvnI CGCG 1 cut(s) 1029
MwoI GCNNNNNNNGC 7 cut(s) 434, 1035, 2723, 2811, 3101, 3470, 3875
NarI GGCGCC 1 cut(s) 2020
NciI CCSGG 3 cut(s) 287, 383, 1807
NcoI CCATGG 2 cut(s) 479, 3946
NdeI CATATG 1 cut(s) 3757
NheI GCTAGC 1 cut(s) 3587
NmuCI GTSAC 6 cut(s) 45, 967, 1030, 1795, 2848, 3896
NsiI ATGCAT 3 cut(s) 601, 1582, 3871
NspI RCATGY 7 cut(s) 208, 599, 695, 1433, 1749, 1943, 3869
NspV TTCGAA 2 cut(s) 1465, 1765
OliI CACNNNNGTG 1 cut(s) 56
PacI TTAATTAA 1 cut(s) 2178
PaeI GCATGC 2 cut(s) 695, 1943
PagI TCATGA 2 cut(s) 3280, 3372
PceI AGGCCT 2 cut(s) 2651, 2821
PciI ACATGT 2 cut(s) 1429, 1745
PciSI GCTCTTC 1 cut(s) 2691
PcsI WCGNNNNNNNCGW 1 cut(s) 3889
PctI GAATGC 4 cut(s) 154, 2475, 2925, 3013
PflMI CCANNNNNTGG 2 cut(s) 277, 1505
PfoI TCCNGGA 4 cut(s) 143, 381, 3338, 3693
PkrI GCNGC 9 cut(s) 492, 1564, 1888, 2242, 2374, 2598, 2941, 3609, 3880
PleI GAGTC 7 cut(s) 1159, 1953, 2340, 2560, 3490, 3548, 3893
PluTI GGCGCC 1 cut(s) 2023
PmeI GTTTAAAC 1 cut(s) 201
PpsI GAGTC 7 cut(s) 1159, 1953, 2340, 2560, 3490, 3548, 3893
PpuMI RGGWCCY 4 cut(s) 155, 186, 836, 3336
PscI ACATGT 2 cut(s) 1429, 1745
PshBI ATTAAT 1 cut(s) 2174
Psp124BI GAGCTC 2 cut(s) 143, 952
Psp1406I AACGTT 1 cut(s) 3261
Psp5II RGGWCCY 4 cut(s) 155, 186, 836, 3336
Psp6I CCWGG 9 cut(s) 143, 471, 1389, 1633, 2305, 2320, 3105, 3338, 3693
PspEI GGTNACC 1 cut(s) 2098
PspFI CCCAGC 2 cut(s) 2220, 4091
PspGI CCWGG 9 cut(s) 143, 471, 1389, 1633, 2305, 2320, 3105, 3338, 3693
PspPPI RGGWCCY 4 cut(s) 155, 186, 836, 3336
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PstI CTGCAG 1 cut(s) 3880
PstNI CAGNNNCTG 3 cut(s) 2774, 2852, 3002
PsuI RGATCY 7 cut(s) 168, 289, 541, 607, 1486, 3665, 3711
PvuII CAGCTG 2 cut(s) 490, 3581
RseI CAYNNNNRTG 8 cut(s) 56, 88, 447, 1373, 2034, 3371, 3540, 3963
SacI GAGCTC 2 cut(s) 143, 952
SapI GCTCTTC 1 cut(s) 2691
SatI GCNGC 9 cut(s) 491, 1563, 1887, 2241, 2373, 2597, 2940, 3608, 3879
ScaI AGTACT 2 cut(s) 101, 553
SchI GAGTC 7 cut(s) 1160, 1954, 2341, 2561, 3491, 3548, 3893
SduI GDGCHC 8 cut(s) 143, 806, 952, 2305, 2816, 3163, 3960, 4070
SexAI ACCWGGT 1 cut(s) 2305
SfaNI GCATC 7 cut(s) 657, 1264, 1451, 1648, 2107, 2892, 3878
SfcI CTRYAG 4 cut(s) 1842, 1851, 2541, 3876
SfoI GGCGCC 1 cut(s) 2021
SfuI TTCGAA 2 cut(s) 1465, 1765
SmiMI CAYNNNNRTG 8 cut(s) 56, 88, 447, 1373, 2034, 3371, 3540, 3963
SmlI CTYRAG 7 cut(s) 889, 1700, 1949, 2452, 2549, 4039, 4117
SmoI CTYRAG 7 cut(s) 889, 1700, 1949, 2452, 2549, 4039, 4117
SphI GCATGC 2 cut(s) 695, 1943
SseBI AGGCCT 2 cut(s) 2651, 2821
SsiI CCGC 7 cut(s) 183, 1291, 1985, 2375, 2507, 2829, 3838
SspDI GGCGCC 1 cut(s) 2019
SspI AATATT 1 cut(s) 1785
SstI GAGCTC 2 cut(s) 143, 952
StuI AGGCCT 2 cut(s) 2651, 2821
StyI CCWWGG 3 cut(s) 429, 479, 3946
TaaI ACNGT 9 cut(s) 556, 755, 1286, 1846, 2545, 3026, 3073, 3145, 4085
TaiI ACGT 5 cut(s) 415, 1180, 3264, 3411, 3502
TaqII GACCGA 1 cut(s) 726
TatI WGTACW 5 cut(s) 99, 551, 1098, 2460, 3145
TseFI GTSAC 6 cut(s) 45, 967, 1030, 1795, 2848, 3896
TseI GCWGC 9 cut(s) 490, 1562, 1886, 2240, 2372, 2596, 2939, 3607, 3878
Tsp45I GTSAC 6 cut(s) 45, 967, 1030, 1795, 2848, 3896
TspDTI ATGAA 7 cut(s) 449, 609, 1128, 1929, 2267, 3165, 3361
TspGWI ACGGA 2 cut(s) 617, 3475
Van91I CCANNNNNTGG 2 cut(s) 277, 1505
Vha464I CTTAAG 3 cut(s) 889, 1949, 2452
VneI GTGCAC 1 cut(s) 3159
VspI ATTAAT 1 cut(s) 2174
XapI RAATTY 6 cut(s) 793, 928, 1069, 1143, 1760, 3620
XceI RCATGY 7 cut(s) 208, 599, 695, 1433, 1749, 1943, 3869
ZrmI AGTACT 2 cut(s) 101, 553
Zsp2I ATGCAT 3 cut(s) 601, 1582, 3871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.