Rorug01G0091800
MYB Family

Protein FAR1-RELATED SEQUENCE 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000329
Physical Location & Seq
Forward (+)
15009119 .. 15018557
9439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0091800.1

Sequence Viewer

Length: 480 bp
ATGGGTTGGAAAGCAGCTGAGAAACTTATTAGGCACTGGAAGGTTCTTAGAGGAGACAATGTGATGATCATAAGAGGCAAAGACAAGGGTGAGACAGGTGTCATTAAGAGAGTCATTCGCTCTCAGAATCGTGTAATTGTGGAGGGCAAAAATCTGGTAAAGAAACATATCAAGCAAGGCCAAGGTCATGAAGGCGGGATATTTACTGTTGAAGCCCCTCTTCATGCCTCAAATGTGCAAGTAACAGATCCAGTAACAGGGAGGCCTTGTAAGGTTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTAGAGTAGCAAGAGGCACAGGAGCATCGGGATCTATAATCCCTCGTCCTGAGATCTTGAAGATAAGAGCTACCCCAAGACCTACCGTTGCTGGTCCAAAGGATACTCCTATGAATCTTGTGTTAGAGAAGACGTATGATGCCAAAACAGGGAAGGGCTTGCCTGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

159

Amino Acids

17.36

Weight (kDa)

10.25

Isoelectric Point (pI)

18.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KOW PF00467 17 - 48 4.7e-10 KOW motif
ribosomal_L24 PF17136 51 - 111 1.5e-21 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 195
AclWI GGATC 2 cut(s) 242, 346
AfiI CCNNNNNNNGG 2 cut(s) 257, 456
AgsI TTSAA 2 cut(s) 212, 367
AluBI AGCT 2 cut(s) 17, 377
AluI AGCT 2 cut(s) 17, 377
Alw26I GTCTC 2 cut(s) 48, 86
AlwI GGATC 2 cut(s) 242, 346
AoxI GGCC 2 cut(s) 178, 263
ApeKI GCWGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 290
BciVI GTATCC 1 cut(s) 403
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 48, 86
BfuI GTATCC 1 cut(s) 403
BglII AGATCT 1 cut(s) 360
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmsI GCATC 2 cut(s) 341, 436
BoxI GACNNNNGTC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 253, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 456
Bse1I ACTGG 2 cut(s) 41, 251
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 257, 456
BseMII CTCAG 3 cut(s) 9, 137, 348
BseNI ACTGG 2 cut(s) 41, 251
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 2 cut(s) 180, 265
BslI CCNNNNNNNGG 2 cut(s) 257, 456
BsmAI GTCTC 2 cut(s) 48, 86
BsnI GGCC 2 cut(s) 180, 265
Bsp143I GATC 4 cut(s) 66, 247, 338, 360
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 180, 265
BspCNI CTCAG 3 cut(s) 10, 136, 349
BspHI TCATGA 1 cut(s) 187
BspPI GGATC 2 cut(s) 242, 346
BsrI ACTGG 2 cut(s) 41, 251
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 4 cut(s) 66, 247, 338, 360
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 208, 394
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 4 cut(s) 18, 47, 123, 357
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 4 cut(s) 69, 250, 341, 363
BstMAI GTCTC 2 cut(s) 48, 86
BstMBI GATC 4 cut(s) 66, 247, 338, 360
BstPAI GACNNNNGTC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 3 cut(s) 247, 338, 360
BstYI RGATCY 3 cut(s) 247, 338, 360
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 2 cut(s) 180, 265
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 467
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 401
CviAII CATG 2 cut(s) 188, 224
CviJI RGCY 6 cut(s) 17, 180, 215, 265, 377, 465
CviKI_1 RGCY 6 cut(s) 17, 180, 215, 265, 377, 465
DdeI CTNAG 4 cut(s) 18, 47, 123, 357
DpnI GATC 4 cut(s) 68, 249, 340, 362
DpnII GATC 4 cut(s) 66, 247, 338, 360
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 191, 227
FaiI YATR 7 cut(s) 71, 168, 189, 225, 344, 419, 444
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 2 cut(s) 187, 223
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 180, 265
Hin1II CATG 2 cut(s) 191, 227
HinfI GANTC 3 cut(s) 111, 127, 421
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 5 cut(s) 188, 290, 336, 356, 364
HpyAV CCTTC 3 cut(s) 34, 185, 454
HpyCH4III ACNGT 2 cut(s) 208, 394
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 1 cut(s) 238
HpyF3I CTNAG 4 cut(s) 18, 47, 123, 357
HpySE526I ACGT 1 cut(s) 440
Hsp92II CATG 2 cut(s) 191, 227
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 4 cut(s) 66, 247, 338, 360
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 9 cut(s) 22, 81, 140, 243, 264, 312, 369, 384, 441
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 341, 436
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 2 cut(s) 241, 253
MalI GATC 4 cut(s) 68, 249, 340, 362
MboI GATC 4 cut(s) 66, 247, 338, 360
MboII GAAGA 3 cut(s) 212, 379, 448
MflI RGATCY 3 cut(s) 247, 338, 360
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 9 cut(s) 44, 68, 136, 228, 238, 255, 286, 314, 360
MseI TTAA 2 cut(s) 105, 282
MspA1I CMGCKG 1 cut(s) 17
NdeII GATC 4 cut(s) 66, 247, 338, 360
NlaIII CATG 2 cut(s) 191, 227
PagI TCATGA 1 cut(s) 187
PceI AGGCCT 1 cut(s) 265
PfeI GAWTC 2 cut(s) 127, 421
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 3 cut(s) 247, 338, 360
PvuII CAGCTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 105, 282
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 66, 247, 338, 360
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 120
SetI ASST 8 cut(s) 19, 45, 100, 187, 276, 379, 391, 443
SfaNI GCATC 2 cut(s) 341, 436
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 195
StuI AGGCCT 1 cut(s) 265
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 208, 394
TaiI ACGT 1 cut(s) 443
TasI AATT 1 cut(s) 135
TfiI GAWTC 2 cut(s) 127, 421
Tru1I TTAA 2 cut(s) 105, 282
Tru9I TTAA 2 cut(s) 105, 282
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 204, 212, 434
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.