Rw1G001900
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000329
Physical Location & Seq
Reverse (-)
3346132 .. 3356967
10836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001900.1

Sequence Viewer

Length: 714 bp
ATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATCTTAAGTAACTCTGGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGGAGGAATACCTTAAGGCTCACCCAAAGGACACCGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGGGAAAAACTCGGTCGGGTTGGGTAATGTTACTGATGCAAGAACATTAGGTGTTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAATTTTGGATGTTCCGAGGCGAGGAACAACCCAAAATAAAAGAAGTAGAACCGATTATGAAGGAAATTCTAACTCAATTGGGGGCACCCCTCAAAGTGGCGTTATGGAGAAGCTTGATAAACTTTACTCTGTAATGATTAACTTACTAGAGAAAAGAGAGCAACAAAGTAAAATTTGGGATGCTATCATGGAGATCCCAAACTTGGATGAAGCTACCGGTTTCAAGGCTCTTGAGCTGCTTGATACCAAAACAAAAAAAGATGGATTCTTGAATATGTCTCCTCAACAGCGATCAAATTGGATATTCCACAAGTTGGGAGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

237

Amino Acids

26.29

Weight (kDa)

4.81

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 187 - 233 1.3e-22 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 700
AciI CCGC 2 cut(s) 12, 209
AclWI GGATC 1 cut(s) 574
AcsI RAATTY 3 cut(s) 387, 451, 558
AfiI CCNNNNNNNGG 5 cut(s) 18, 407, 482, 589, 700
AflII CTTAAG 2 cut(s) 46, 122
AgeI ACCGGT 1 cut(s) 602
AgsI TTSAA 3 cut(s) 75, 610, 658
AjuI GAANNNNNNNTTGG 4 cut(s) 177, 209, 312, 344
AluBI AGCT 3 cut(s) 499, 599, 622
AluI AGCT 3 cut(s) 499, 599, 622
Alw26I GTCTC 1 cut(s) 669
AlwI GGATC 1 cut(s) 574
ApeKI GCWGC 1 cut(s) 622
ApoI RAATTY 3 cut(s) 387, 451, 558
AsiGI ACCGGT 1 cut(s) 602
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 122, 281, 360
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 473
BanI GGYRCC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 609
BccI CCATC 3 cut(s) 18, 358, 641
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 1 cut(s) 533
BfrI CTTAAG 2 cut(s) 46, 122
BisI GCNGC 2 cut(s) 12, 623
BlsI GCNGC 2 cut(s) 13, 624
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 472
BmsI GCATC 3 cut(s) 51, 238, 556
BpiI GAAGAC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 602
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 407, 482, 589, 700
Bse118I RCCGGY 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 5 cut(s) 29, 358, 400, 571, 598
BseLI CCNNNNNNNGG 5 cut(s) 18, 407, 482, 589, 700
BseRI GAGGAG 1 cut(s) 657
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 609
Bsh1285I CGRYCG 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 470
BshTI ACCGGT 1 cut(s) 602
BsiEI CGRYCG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 5 cut(s) 18, 407, 482, 589, 700
BsmAI GTCTC 1 cut(s) 669
BsmFI GGGAC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 2 cut(s) 579, 677
BspACI CCGC 2 cut(s) 12, 209
BspLI GGNNCC 1 cut(s) 472
BspPI GGATC 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 470
BspTI CTTAAG 2 cut(s) 46, 122
BsrFI RCCGGY 1 cut(s) 602
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 2 cut(s) 579, 677
BstAFI CTTAAG 2 cut(s) 46, 122
BstC8I GCNNGC 1 cut(s) 286
BstF5I GGATG 5 cut(s) 29, 358, 400, 571, 598
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 582, 680
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 2 cut(s) 579, 677
BstMCI CGRYCG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 609
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BtsCI GGATG 5 cut(s) 29, 358, 400, 571, 598
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 332
CspAI ACCGGT 1 cut(s) 602
CviAII CATG 2 cut(s) 285, 574
CviJI RGCY 5 cut(s) 128, 499, 599, 614, 622
CviKI_1 RGCY 5 cut(s) 128, 499, 599, 614, 622
DpnI GATC 2 cut(s) 581, 679
DpnII GATC 2 cut(s) 579, 677
Eco47I GGWCC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 2 cut(s) 288, 577
FaqI GGGAC 1 cut(s) 172
FatI CATG 2 cut(s) 284, 573
Fnu4HI GCNGC 2 cut(s) 12, 623
FokI GGATG 5 cut(s) 36, 345, 407, 578, 605
Fsp4HI GCNGC 2 cut(s) 12, 623
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 152
GluI GCNGC 2 cut(s) 12, 623
HapII CCGG 1 cut(s) 603
HhaI GCGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 288, 577
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 2 cut(s) 71, 651
HpaII CCGG 1 cut(s) 603
HphI GGTGA 3 cut(s) 122, 281, 360
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 617, 655
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 266, 440
HpyCH4V TGCA 2 cut(s) 251, 288
Hsp92II CATG 2 cut(s) 288, 577
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 579, 677
LpnPI CCDG 3 cut(s) 42, 396, 616
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 3 cut(s) 51, 238, 556
MaeI CTAG 1 cut(s) 533
MaeIII GTNAC 3 cut(s) 29, 50, 241
MalI GATC 2 cut(s) 581, 679
MboI GATC 2 cut(s) 579, 677
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 6 cut(s) 186, 387, 451, 462, 558, 682
MmeI TCCRAC 2 cut(s) 310, 386
Mph1103I ATGCAT 1 cut(s) 290
MseI TTAA 3 cut(s) 47, 123, 525
MspCI CTTAAG 2 cut(s) 46, 122
MspI CCGG 1 cut(s) 603
MunI CAATTG 1 cut(s) 462
NdeII GATC 2 cut(s) 579, 677
NlaIII CATG 2 cut(s) 288, 577
NlaIV GGNNCC 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 29
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 1 cut(s) 288
PaeI GCATGC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 71, 651
PflMI CCANNNNNTGG 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 602
PkrI GCNGC 2 cut(s) 13, 624
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 1 cut(s) 579
SaqAI TTAA 3 cut(s) 47, 123, 525
SatI GCNGC 2 cut(s) 12, 623
Sau3AI GATC 2 cut(s) 579, 677
Sau96I GGNCC 1 cut(s) 332
SduI GDGCHC 1 cut(s) 473
SetI ASST 7 cut(s) 89, 123, 265, 277, 501, 601, 624
SfaNI GCATC 3 cut(s) 51, 238, 556
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 3 cut(s) 46, 122, 617
SmoI CTYRAG 3 cut(s) 46, 122, 617
SphI GCATGC 1 cut(s) 288
Sse9I AATT 6 cut(s) 186, 387, 451, 462, 558, 682
SsiI CCGC 2 cut(s) 12, 209
SspMI CTAG 1 cut(s) 533
TaqII GACCGA 1 cut(s) 214
TasI AATT 6 cut(s) 186, 387, 451, 462, 558, 682
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 71, 651
Tru1I TTAA 3 cut(s) 47, 123, 525
Tru9I TTAA 3 cut(s) 47, 123, 525
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 622
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 117, 459, 609
Van91I CCANNNNNTGG 1 cut(s) 700
Vha464I CTTAAG 2 cut(s) 46, 122
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 3 cut(s) 387, 451, 558
XceI RCATGY 1 cut(s) 288
XspI CTAG 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.