Rmu_ssc0000366.1_g000011
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000366.1
OG0000329
Physical Location & Seq
Forward (+)
52039 .. 54015
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000366.1_g000011.1.cds

Sequence Viewer

Length: 978 bp
atgggagattcacaagggaatggtaaaagaaaggattacaaaacttggaacactgaagaaagcaacgttttgcttcaacttatggttgaaggcgccagacttggatttcgtgatattaatggtgtgataagcaaacaaacagtagagacaaagctacttcctaaacttaaggaaaaacttggttatgaaataacttttagtcattaccaaagtagagtgaaatggtttaagaaacaatacaccaattactctcagcttatgcgccatagttctggatttgggtgggatccgatcacaaaaagattcaccgctgatgatgaagtatgggcagattatttgaagtcacatccaacgcatgggcactttcggtcagaaacttttccagactatgaggacttgaaaattgcagttggaaatggaactgcaactggaatgggctcaatcagtctaggtgatgatacagatgcaacaacatttggagcggaggaaaatggatcttggggaattggtggcatagatgaattattttttgatcgaactactaacatgtttgtacaaagtgaaaatgagtcatcacaccaagaaaactcgccatctctttcacaacaaccctcccaaggtaccagtatagatgctccagctccacctcatagcaggactcaaggaaaacggagtagaactgactatgaaaataatagtggctcaaaaggggctactggtcaggctgaggttctagaaaacttatcaagtggcattggtaaaattgtcacaagttttgataaaatttacggcttaatggagaagagagaatcaagagagagtgaccttttggatgctatgaaggagactccaggattaactgatgaagcttgctttatggctcttgattttcttaatactaaagcaaaacaagatatcttcttgaagatgactcctgaacagcgacttaattggatcacctataaacaaatgcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

325

Amino Acids

36.56

Weight (kDa)

5.5

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 92, 620
AccB7I CCANNNNNTGG 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 2 cut(s) 309, 482
AclI AACGTT 1 cut(s) 66
AclWI GGATC 4 cut(s) 281, 294, 502, 962
AcsI RAATTY 1 cut(s) 783
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 555, 622
AfiI CCNNNNNNNGG 2 cut(s) 356, 617
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 77, 89, 340, 400, 925
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 4 cut(s) 154, 256, 641, 869
AluI AGCT 4 cut(s) 154, 256, 641, 869
Alw26I GTCTC 2 cut(s) 140, 839
AlwI GGATC 4 cut(s) 281, 294, 502, 962
ApoI RAATTY 1 cut(s) 783
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 378
Asp718I GGTACC 1 cut(s) 620
AspLEI GCGC 2 cut(s) 95, 264
AsuHPI GGTGA 3 cut(s) 298, 464, 949
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 2 cut(s) 92, 620
BanII GRGCYC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 726
BccI CCATC 1 cut(s) 601
BceAI ACGGC 1 cut(s) 805
BciT130I CCWGG 1 cut(s) 852
BcoDI GTCTC 2 cut(s) 140, 839
BfaI CTAG 2 cut(s) 449, 734
BfoI RGCGCY 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 852
BmiI GGNNCC 3 cut(s) 94, 288, 622
BmrFI CCNGG 1 cut(s) 852
BmsI GCATC 3 cut(s) 454, 622, 823
BpmI CTGGAG 2 cut(s) 621, 834
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 616
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 617
Bse1I ACTGG 3 cut(s) 433, 624, 721
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 346, 838
BseLI CCNNNNNNNGG 2 cut(s) 356, 617
BseMII CTCAG 2 cut(s) 266, 717
BseNI ACTGG 3 cut(s) 433, 624, 721
BseSI GKGCMC 1 cut(s) 363
BshNI GGYRCC 2 cut(s) 92, 620
BslI CCNNNNNNNGG 2 cut(s) 356, 617
BsmAI GTCTC 2 cut(s) 140, 839
Bsp1286I GDGCHC 2 cut(s) 363, 440
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 5 cut(s) 286, 291, 494, 532, 954
BspACI CCGC 2 cut(s) 309, 482
BspCNI CTCAG 2 cut(s) 265, 718
BspLI GGNNCC 3 cut(s) 94, 288, 622
BspPI GGATC 4 cut(s) 281, 294, 502, 962
BspT107I GGYRCC 2 cut(s) 92, 620
BspTI CTTAAG 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 553
BsrI ACTGG 3 cut(s) 433, 624, 721
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 5 cut(s) 286, 291, 494, 532, 954
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 871
BstDEI CTNAG 2 cut(s) 252, 726
BstF5I GGATG 2 cut(s) 346, 838
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 264
BstKTI GATC 5 cut(s) 289, 294, 497, 535, 957
BstMAI GTCTC 2 cut(s) 140, 839
BstMBI GATC 5 cut(s) 286, 291, 494, 532, 954
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 850
BstSLI GKGCMC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 286, 494
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 286, 494
BtsCI GGATG 2 cut(s) 346, 838
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 871
CfoI GCGC 2 cut(s) 95, 264
Csp6I GTAC 2 cut(s) 554, 621
CviAII CATG 2 cut(s) 356, 547
CviQI GTAC 2 cut(s) 554, 621
DdeI CTNAG 2 cut(s) 252, 726
DinI GGCGCC 1 cut(s) 94
DpnI GATC 5 cut(s) 288, 293, 496, 534, 956
DpnII GATC 5 cut(s) 286, 291, 494, 532, 954
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 440
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 359, 550
FatI CATG 2 cut(s) 355, 546
FokI GGATG 2 cut(s) 333, 845
FriOI GRGCYC 1 cut(s) 440
FspBI CTAG 2 cut(s) 449, 734
GlaI GCGC 2 cut(s) 94, 263
GsuI CTGGAG 2 cut(s) 621, 834
HaeII RGCGCY 1 cut(s) 96
HhaI GCGC 2 cut(s) 95, 264
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 359, 550
Hin6I GCGC 2 cut(s) 93, 262
HinP1I GCGC 2 cut(s) 93, 262
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 7 cut(s) 8, 303, 569, 658, 809, 847, 931
HphI GGTGA 3 cut(s) 298, 464, 949
Hpy188I TCNGA 2 cut(s) 291, 373
Hpy188III TCNNGA 8 cut(s) 110, 273, 383, 734, 813, 884, 922, 935
HpyAV CCTTC 2 cut(s) 83, 835
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 407, 425, 467, 973
HpyF3I CTNAG 2 cut(s) 252, 726
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 359, 550
HspAI GCGC 2 cut(s) 93, 262
KasI GGCGCC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 5 cut(s) 286, 291, 494, 532, 954
LmnI GCTCC 3 cut(s) 479, 640, 646
LweI GCATC 3 cut(s) 454, 622, 823
MaeI CTAG 2 cut(s) 449, 734
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 342, 766, 821
MalI GATC 5 cut(s) 288, 293, 496, 534, 956
MbiI CCGCTC 1 cut(s) 482
MboI GATC 5 cut(s) 286, 291, 494, 532, 954
MboII GAAGA 4 cut(s) 68, 814, 910, 937
MflI RGATCY 2 cut(s) 286, 494
MhlI GDGCHC 2 cut(s) 363, 440
MluCI AATT 7 cut(s) 244, 402, 504, 521, 762, 783, 949
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 4 cut(s) 578, 652, 841, 925
MmeI TCCRAC 2 cut(s) 374, 391
MnlI CCTC 5 cut(s) 385, 478, 622, 657, 721
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 7 cut(s) 117, 168, 228, 794, 857, 894, 948
MspA1I CMGCKG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 852
MvaI CCWGG 1 cut(s) 852
NarI GGCGCC 1 cut(s) 93
NdeII GATC 5 cut(s) 286, 291, 494, 532, 954
NlaIII CATG 2 cut(s) 359, 550
NlaIV GGNNCC 3 cut(s) 94, 288, 622
NmuCI GTSAC 3 cut(s) 342, 766, 821
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 8, 303, 809
PflMI CCANNNNNTGG 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 850
PleI GAGTC 4 cut(s) 577, 652, 841, 925
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 4 cut(s) 577, 652, 841, 925
PscI ACATGT 1 cut(s) 546
PshBI ATTAAT 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 3 cut(s) 94, 288, 622
PsuI RGATCY 2 cut(s) 286, 494
RsaI GTAC 2 cut(s) 555, 622
RsaNI GTAC 2 cut(s) 554, 621
SaqAI TTAA 7 cut(s) 117, 168, 228, 794, 857, 894, 948
Sau3AI GATC 5 cut(s) 286, 291, 494, 532, 954
SchI GAGTC 4 cut(s) 578, 652, 841, 925
ScrFI CCNGG 1 cut(s) 852
SduI GDGCHC 2 cut(s) 363, 440
SfaNI GCATC 3 cut(s) 454, 622, 823
SfoI GGCGCC 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 167, 660
SmoI CTYRAG 2 cut(s) 167, 660
Sse9I AATT 7 cut(s) 244, 402, 504, 521, 762, 783, 949
SsiI CCGC 2 cut(s) 309, 482
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 2 cut(s) 449, 734
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 535
TaqII GACCGA 1 cut(s) 357
TasI AATT 7 cut(s) 244, 402, 504, 521, 762, 783, 949
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 3 cut(s) 8, 303, 809
Tru1I TTAA 7 cut(s) 117, 168, 228, 794, 857, 894, 948
Tru9I TTAA 7 cut(s) 117, 168, 228, 794, 857, 894, 948
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 3 cut(s) 342, 766, 821
Tsp45I GTSAC 3 cut(s) 342, 766, 821
TspDTI ATGAA 6 cut(s) 201, 333, 534, 702, 854, 879
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 356
Vha464I CTTAAG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 783
XbaI TCTAGA 1 cut(s) 733
XceI RCATGY 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 2 cut(s) 449, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.