FvH4_6g24700
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000329
Physical Location & Seq
Forward (+)
18720309 .. 18721377
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24700.t1

Sequence Viewer

Length: 849 bp
ATGGGAGATTCACAAGGAAATGGTAAACGAAAGGATTATAAAACTTGGACCGCGGAAGAGAGCAATGTTTTGCTCCAGCTCATGGTTGAAGGCGCTAAGCTTGGGTTCCGTGATATTAATGGTCTTATGCGTCACAATTCTGGATTTGGGTGGGACCCGATCACAAAGAGATTCACTGCACCTGATGAAGTATGGGCAGACTATTTAAAGTCACATCCAACGCATGCGCATTTTCGGACAGAAACTTTTCGAGACTATGAGGATTTGAAAATTGCAGTTGGTAATGGAACTGCAACTGGGATGGGGTCAATAGGTTTAGGTGATGATACAGATGCCACAACATATGAAGTAGGAGAAAATGGATCTTGGGAAATGGGTGGCATAGATGACTTGGTCTTTGATCAAGATAATCACACCTTTGTGCAAAATGAAAATGAGTCATCGTACCAAGAAAACTTGCCATCTCTTTCCCGACAACGCACCCCAGGTAACAATGCAAATGCTGCACCACATAGCAGGGCTCAAGGCAAAAGAAGTAGAGCTGATTATGAACAAAGTAGCAACTCAAAAGGGGTAGCTACTCAAGCTGAAGTTCTGGAAAACTTATCAACTGGCTTTGGTAAAATTGTCACCACTTTTGATACAATTTGTGGCATAATGGAGAAGAGAGAATCAAGAGACACTGAATGTTGGATTGCTATTCAGGAGACCCCAGGATTAACTGATGAGGCTAGCTTTTTTGCGCTTAGTTTTCTTAACACCAAGGCAAAGCAAGACATCTTCTTGAAGATGAGTCTGGACCAACGACGTAATTGGATCACTTGGGCACGAATTAATGCATCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

283

Amino Acids

31.46

Weight (kDa)

5.07

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 230 - 274 2.4e-15 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
Acc16I TGCGCA 1 cut(s) 228
AccB7I CCANNNNNTGG 1 cut(s) 82
AccII CGCG 1 cut(s) 53
AciI CCGC 2 cut(s) 51, 53
AclWI GGATC 2 cut(s) 370, 824
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 3 cut(s) 89, 268, 787
AjnI CCWGG 2 cut(s) 484, 712
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 6 cut(s) 79, 100, 542, 578, 587, 735
AluI AGCT 6 cut(s) 79, 100, 542, 578, 587, 735
Alw26I GTCTC 3 cut(s) 246, 672, 701
AlwI GGATC 2 cut(s) 370, 824
ApeKI GCWGC 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AseI ATTAAT 2 cut(s) 117, 834
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 3 cut(s) 95, 229, 745
AspS9I GGNCC 3 cut(s) 48, 154, 799
AsuHPI GGTGA 2 cut(s) 332, 622
AsuNHI GCTAGC 1 cut(s) 731
AvaII GGWCC 3 cut(s) 48, 154, 799
BaeGI GKGCMC 1 cut(s) 829
BanII GRGCYC 1 cut(s) 523
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 295, 469
BciT130I CCWGG 2 cut(s) 486, 714
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 3 cut(s) 246, 672, 701
BfaI CTAG 1 cut(s) 732
BfoI RGCGCY 1 cut(s) 96
BisI GCNGC 1 cut(s) 504
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 2 cut(s) 486, 714
Bme18I GGWCC 3 cut(s) 48, 154, 799
BmgT120I GGNCC 3 cut(s) 48, 154, 799
BmiI GGNNCC 3 cut(s) 107, 155, 156
BmrFI CCNGG 2 cut(s) 486, 714
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 322
BmtI GCTAGC 1 cut(s) 735
BmuI ACTGGG 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 507, 567
BsaI GGTCTC 1 cut(s) 701
BsaJI CCNNGG 4 cut(s) 51, 484, 712, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 301, 616
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 2 cut(s) 486, 714
BseDI CCNNGG 4 cut(s) 51, 484, 712, 762
BseGI GGATG 2 cut(s) 214, 306
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 301, 616
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 1 cut(s) 490
BsgI GTGCAG 2 cut(s) 162, 489
Bsh1236I CGCG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 3 cut(s) 246, 672, 701
BsmFI GGGAC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 701
Bsp1286I GDGCHC 2 cut(s) 523, 829
Bsp143I GATC 4 cut(s) 159, 362, 400, 816
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 2 cut(s) 51, 53
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 107, 155, 156
BspOI GCTAGC 1 cut(s) 735
BspPI GGATC 2 cut(s) 370, 824
BspTNI GGTCTC 1 cut(s) 701
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 301, 616
BssECI CCNNGG 4 cut(s) 51, 484, 712, 762
BssMI GATC 4 cut(s) 159, 362, 400, 816
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 2 cut(s) 486, 714
Bst6I CTCTTC 2 cut(s) 51, 659
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 225, 733
BstDEI CTNAG 2 cut(s) 96, 746
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 214, 306
BstFNI CGCG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 3 cut(s) 95, 229, 745
BstKTI GATC 4 cut(s) 162, 365, 403, 819
BstMAI GTCTC 3 cut(s) 246, 672, 701
BstMBI GATC 4 cut(s) 159, 362, 400, 816
BstMWI GCNNNNNNNGC 2 cut(s) 503, 584
BstNI CCWGG 2 cut(s) 486, 714
BstNSI RCATGY 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 484, 712
BstSLI GKGCMC 1 cut(s) 829
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 214, 306
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 174, 681
Cac8I GCNNGC 2 cut(s) 225, 733
CfoI GCGC 3 cut(s) 95, 229, 745
Cfr13I GGNCC 3 cut(s) 48, 154, 799
Cfr42I CCGCGG 1 cut(s) 54
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 445
CviAII CATG 2 cut(s) 82, 224
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 96, 746
DpnI GATC 4 cut(s) 161, 364, 402, 818
DpnII GATC 4 cut(s) 159, 362, 400, 816
DraI TTTAAA 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 51, 659
EarI CTCTTC 2 cut(s) 51, 659
Eco130I CCWWGG 1 cut(s) 762
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 701
Eco47I GGWCC 3 cut(s) 48, 154, 799
Eco57I CTGAAG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 484, 712
EcoT14I CCWWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 841
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 2 cut(s) 85, 227
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 81, 223
FauNDI CATATG 1 cut(s) 343
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 2 cut(s) 201, 313
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 504
FspAI RTGCGCAY 1 cut(s) 228
FspBI CTAG 1 cut(s) 732
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 3 cut(s) 94, 228, 744
GluI GCNGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 96
HgaI GACGC 1 cut(s) 119
HhaI GCGC 3 cut(s) 95, 229, 745
Hin1II CATG 2 cut(s) 85, 227
Hin6I GCGC 3 cut(s) 93, 227, 743
HinP1I GCGC 3 cut(s) 93, 227, 743
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 8, 171, 437, 671, 793
HphI GGTGA 2 cut(s) 332, 622
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 9 cut(s) 141, 251, 404, 471, 596, 675, 704, 784, 797
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 7 cut(s) 179, 275, 293, 424, 497, 506, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 584
HpyF3I CTNAG 2 cut(s) 96, 746
HpySE526I ACGT 1 cut(s) 808
Hsp92II CATG 2 cut(s) 85, 227
HspAI GCGC 3 cut(s) 93, 227, 743
KflI GGGWCCC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 400
KspI CCGCGG 1 cut(s) 54
Kzo9I GATC 4 cut(s) 159, 362, 400, 816
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 732
MaeII ACGT 1 cut(s) 808
MaeIII GTNAC 4 cut(s) 131, 210, 488, 628
MalI GATC 4 cut(s) 161, 364, 402, 818
MboI GATC 4 cut(s) 159, 362, 400, 816
MboII GAAGA 4 cut(s) 68, 676, 772, 799
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 523, 829
MluCI AATT 6 cut(s) 136, 270, 624, 645, 811, 831
MlyI GAGTC 2 cut(s) 446, 802
MmeI TCCRAC 2 cut(s) 242, 671
MnlI CCTC 2 cut(s) 253, 721
Mph1103I ATGCAT 1 cut(s) 841
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 5 cut(s) 117, 206, 719, 756, 834
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 486, 714
MvaI CCWGG 2 cut(s) 486, 714
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 503, 584
NdeI CATATG 1 cut(s) 343
NdeII GATC 4 cut(s) 159, 362, 400, 816
NheI GCTAGC 1 cut(s) 731
NlaIII CATG 2 cut(s) 85, 227
NlaIV GGNNCC 3 cut(s) 107, 155, 156
NmuCI GTSAC 3 cut(s) 131, 210, 628
NsbI TGCGCA 1 cut(s) 228
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 419
PaeI GCATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 3 cut(s) 8, 171, 671
PflFI GACNNNGTC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 2 cut(s) 445, 801
PpsI GAGTC 2 cut(s) 445, 801
PpuMI RGGWCCY 1 cut(s) 154
PshBI ATTAAT 2 cut(s) 117, 834
PsiI TTATAA 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 484, 712
PspGI CCWGG 2 cut(s) 484, 712
PspN4I GGNNCC 3 cut(s) 107, 155, 156
PspPI GGNCC 3 cut(s) 48, 154, 799
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 419
SacII CCGCGG 1 cut(s) 54
SaqAI TTAA 5 cut(s) 117, 206, 719, 756, 834
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 4 cut(s) 159, 362, 400, 816
Sau96I GGNCC 3 cut(s) 48, 154, 799
SchI GAGTC 2 cut(s) 446, 802
ScrFI CCNGG 2 cut(s) 486, 714
SduI GDGCHC 2 cut(s) 523, 829
SfaNI GCATC 1 cut(s) 322
Sfr303I CCGCGG 1 cut(s) 54
SgrBI CCGCGG 1 cut(s) 54
SinI GGWCC 3 cut(s) 48, 154, 799
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 522, 582
SmoI CTYRAG 2 cut(s) 522, 582
SphI GCATGC 1 cut(s) 227
Sse9I AATT 6 cut(s) 136, 270, 624, 645, 811, 831
SsiI CCGC 2 cut(s) 51, 53
SspMI CTAG 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 484, 712
StyI CCWWGG 1 cut(s) 762
TaiI ACGT 1 cut(s) 811
TaqI TCGA 1 cut(s) 250
TasI AATT 6 cut(s) 136, 270, 624, 645, 811, 831
TfiI GAWTC 3 cut(s) 8, 171, 671
Tru1I TTAA 5 cut(s) 117, 206, 719, 756, 834
Tru9I TTAA 5 cut(s) 117, 206, 719, 756, 834
TscAI CASTG 2 cut(s) 181, 688
TseFI GTSAC 3 cut(s) 131, 210, 628
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 3 cut(s) 131, 210, 628
TspDTI ATGAA 4 cut(s) 201, 360, 444, 564
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 181, 688
Tth111I GACNNNGTC 1 cut(s) 392
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 3 cut(s) 48, 154, 799
VspI ATTAAT 2 cut(s) 117, 834
XceI RCATGY 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 732
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.