Rmu_ssc0000472.1_g000025
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000472.1
OG0000329
Physical Location & Seq
Forward (+)
139578 .. 142554
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000472.1_g000025.1.cds

Sequence Viewer

Length: 1347 bp
atgggacctccgcaacaaggaaagggcaaaggagcaaaagaagagggaaaggatgtgggaaattatgacaaatggagtaatgaagagagcaatgagttactgcaagtcttggttgacactgccaaacgtggttggcgcaatcctcaaagtggtttgatagacaaaaaaacagttgagagcaaaacacttccatcttttaataaaaaactaggttgtgaaaagacttataaacattacacccaccgggtgaaatggtttaagaaacaatactctatgtattctgagcttatgcgtcatagctccggctttgggtgggactccatcatgaagagaatcactgctagtgatgaagtatgggaagattacttcaaggcacacccaaaacatagaagccttcgcaaccagactttcatagactatgaggatttgaaaattgcagtgggaaatggaattgcaacaggaaagttttcaattagcctgggtgatgatactgatgcaaccacatacatggttgaggaaagtgaaagtggtgctttgaatgacttggtctataacaaaaatgctgatgcattcataacagcaggggatgaatcatcattccaaggttattcaccaccgccatcatccttaccttttgagggcacgaatgtgggagctcctaataatgatgtggaaaagaatactggaagtagtgtaactggaaaacgcaacaggaacgactttgagagaaataatagcttgactgatgatatttctgaagctgatgacactccaggcttgaatgatgaagcacgttacttggctcttgagttgcttaatactaaagcattgaaggatgtttttctggaaatgaccccggaggagcgatttaagtggattggattcaagacaataggcgtccgctatcatctcaaagagtttagtggtcagggtcgccaccctgaaaatgcgcgtgagttattcaatcttcgtcatgcttccttgagaaacgtagttgagagaatatttggagtacttaaatcccgtttcacaatattcaagactgcacctccattcccatttaagacacaagcagagctagtgttggcttgtgcaggacttcacaactttcttcgtaaggaatgtcgttctgatttatttcctgttgaaccggaggatgaagaagattatgaacatgaagaagatccggaagatgaattccaaacccaagaccaacaaagagaggaagctaatgattggagaatggagatagctaatcatatgtggagagatgcaagacctgcacctgatcctgaacccaatcctccacccgttgttgaaggcaacaatgcagcagaacaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

448

Amino Acids

51.05

Weight (kDa)

5.17

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
Acc36I ACCTGC 1 cut(s) 1288
AccII CGCG 1 cut(s) 952
AccIII TCCGGA 1 cut(s) 1186
AciI CCGC 3 cut(s) 11, 617, 901
AclWI GGATC 2 cut(s) 1178, 1283
AcsI RAATTY 1 cut(s) 1196
AcuI CTGAAG 1 cut(s) 777
AcyI GRCGYC 1 cut(s) 897
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 1 cut(s) 1014
AfiI CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
AjnI CCWGG 2 cut(s) 477, 772
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 8 cut(s) 286, 300, 656, 738, 761, 1078, 1229, 1253
AluI AGCT 8 cut(s) 286, 300, 656, 738, 761, 1078, 1229, 1253
Alw21I GWGCWC 1 cut(s) 658
AlwI GGATC 2 cut(s) 1178, 1283
Aor13HI TCCGGA 1 cut(s) 1186
ApeKI GCWGC 1 cut(s) 1331
ApoI RAATTY 1 cut(s) 1196
Asp700I GAANNNNTTC 1 cut(s) 466
AspLEI GCGC 2 cut(s) 138, 952
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 2 cut(s) 245, 857
AsuHPI GGTGA 3 cut(s) 259, 494, 603
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 658
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 1 cut(s) 1343
BccI CCATC 3 cut(s) 199, 329, 628
BciT130I CCWGG 2 cut(s) 479, 774
BcnI CCSGG 2 cut(s) 245, 857
BfaI CTAG 3 cut(s) 209, 342, 1079
BfuAI ACCTGC 1 cut(s) 1288
BisI GCNGC 1 cut(s) 1332
BlsI GCNGC 1 cut(s) 1333
BmcAI AGTACT 1 cut(s) 1014
Bme1390I CCNGG 4 cut(s) 245, 479, 774, 857
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 245, 479, 774, 857
BmsI GCATC 3 cut(s) 484, 556, 1261
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 2 cut(s) 827, 1003
BpuMI CCSGG 2 cut(s) 245, 857
BsaHI GRCGYC 1 cut(s) 897
BsaJI CCNNGG 3 cut(s) 478, 601, 855
BsaWI WCCGGW 2 cut(s) 1150, 1186
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
Bse1I ACTGG 2 cut(s) 688, 703
Bse3DI GCAATG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 1186
BseBI CCWGG 2 cut(s) 479, 774
BseDI CCNNGG 3 cut(s) 478, 601, 855
BseGI GGATG 5 cut(s) 58, 592, 623, 841, 1162
BseLI CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 688, 703
BseRI GAGGAG 1 cut(s) 875
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 1 cut(s) 1343
BsgI GTGCAG 3 cut(s) 1029, 1113, 1266
Bsh1236I CGCG 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 5 cut(s) 244, 303, 857, 1151, 1187
BslFI GGGAC 2 cut(s) 18, 329
BslI CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
BsmFI GGGAC 2 cut(s) 18, 329
BsmI GAATGC 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 644, 658
Bsp13I TCCGGA 1 cut(s) 1186
Bsp143I GATC 2 cut(s) 1183, 1288
BspACI CCGC 3 cut(s) 11, 617, 901
BspCNI CTCAG 1 cut(s) 274
BspEI TCCGGA 1 cut(s) 1186
BspFNI CGCG 1 cut(s) 952
BspHI TCATGA 2 cut(s) 324, 1343
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 1288
BspPI GGATC 2 cut(s) 1178, 1283
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 2 cut(s) 688, 703
BssECI CCNNGG 3 cut(s) 478, 601, 855
BssMI GATC 2 cut(s) 1183, 1288
BssNI GRCGYC 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 479, 774
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 3 cut(s) 36, 78, 323
BstACI GRCGYC 1 cut(s) 897
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 5 cut(s) 58, 592, 623, 841, 1162
BstFNI CGCG 1 cut(s) 952
BstHHI GCGC 2 cut(s) 138, 952
BstKTI GATC 2 cut(s) 1186, 1291
BstMBI GATC 2 cut(s) 1183, 1288
BstMWI GCNNNNNNNGC 1 cut(s) 1280
BstNI CCWGG 2 cut(s) 479, 774
BstSCI CCNGG 4 cut(s) 243, 477, 772, 855
BstSLI GKGCMC 1 cut(s) 644
BstUI CGCG 1 cut(s) 952
BstV1I GCAGC 1 cut(s) 1343
BstX2I RGATCY 1 cut(s) 1183
BstXI CCANNNNNNTGG 1 cut(s) 508
BstYI RGATCY 1 cut(s) 1183
BtsCI GGATG 5 cut(s) 58, 592, 623, 841, 1162
BtsI GCAGTG 3 cut(s) 117, 336, 444
BtsIMutI CAGTG 3 cut(s) 117, 336, 444
BveI ACCTGC 1 cut(s) 1288
CciI TCATGA 2 cut(s) 324, 1343
CfoI GCGC 2 cut(s) 138, 952
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 2 cut(s) 281, 886
Csp6I GTAC 1 cut(s) 1013
CviAII CATG 5 cut(s) 325, 508, 974, 1175, 1344
CviQI GTAC 1 cut(s) 1013
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 1185, 1290
DpnII GATC 2 cut(s) 1183, 1288
DraIII CACNNNGTG 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 36, 78, 323
EarI CTCTTC 3 cut(s) 36, 78, 323
Ecl136II GAGCTC 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 777
EcoICRI GAGCTC 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 2 cut(s) 477, 772
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 5 cut(s) 328, 511, 977, 1178, 1347
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 2 cut(s) 18, 329
FatI CATG 5 cut(s) 324, 507, 973, 1174, 1343
FauNDI CATATG 1 cut(s) 1260
Fnu4HI GCNGC 1 cut(s) 1332
FokI GGATG 5 cut(s) 65, 599, 610, 848, 1169
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 1 cut(s) 1332
FspBI CTAG 3 cut(s) 209, 342, 1079
GlaI GCGC 2 cut(s) 137, 951
GluI GCNGC 1 cut(s) 1332
GsuI CTGGAG 1 cut(s) 756
HapII CCGG 5 cut(s) 244, 303, 857, 1151, 1187
HgaI GACGC 2 cut(s) 281, 886
HhaI GCGC 2 cut(s) 138, 952
Hin1I GRCGYC 1 cut(s) 897
Hin1II CATG 5 cut(s) 328, 511, 977, 1178, 1347
Hin6I GCGC 2 cut(s) 136, 950
HinP1I GCGC 2 cut(s) 136, 950
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 317, 333, 590, 882
HpaII CCGG 5 cut(s) 244, 303, 857, 1151, 1187
HphI GGTGA 3 cut(s) 259, 494, 603
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 283, 757, 1132
Hpy188III TCNNGA 8 cut(s) 325, 806, 845, 886, 1039, 1187, 1292, 1344
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 404, 826, 1313
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 3 cut(s) 127, 793, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 1280
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 3 cut(s) 127, 793, 990
Hsp92I GRCGYC 1 cut(s) 897
Hsp92II CATG 5 cut(s) 328, 511, 977, 1178, 1347
HspAI GCGC 2 cut(s) 136, 950
Kpn2I TCCGGA 1 cut(s) 1186
Kzo9I GATC 2 cut(s) 1183, 1288
LmnI GCTCC 5 cut(s) 32, 305, 653, 661, 862
Lsp1109I GCAGC 1 cut(s) 1343
LweI GCATC 3 cut(s) 484, 556, 1261
MaeI CTAG 3 cut(s) 209, 342, 1079
MaeII ACGT 3 cut(s) 127, 793, 990
MaeIII GTNAC 3 cut(s) 96, 694, 794
MalI GATC 2 cut(s) 1185, 1290
MboI GATC 2 cut(s) 1183, 1288
MflI RGATCY 1 cut(s) 1183
MhlI GDGCHC 2 cut(s) 644, 658
MluCI AATT 5 cut(s) 61, 432, 450, 471, 1196
MlyI GAGTC 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 571
MroI TCCGGA 1 cut(s) 1186
MroXI GAANNNNTTC 1 cut(s) 466
MseI TTAA 6 cut(s) 198, 258, 816, 870, 1017, 1062
MslI CAYNNNNRTG 2 cut(s) 506, 647
MspI CCGG 5 cut(s) 244, 303, 857, 1151, 1187
MspR9I CCNGG 4 cut(s) 245, 479, 774, 857
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 2 cut(s) 479, 774
MvnI CGCG 1 cut(s) 952
MwoI GCNNNNNNNGC 1 cut(s) 1280
NciI CCSGG 2 cut(s) 245, 857
NdeI CATATG 1 cut(s) 1260
NdeII GATC 2 cut(s) 1183, 1288
NlaIII CATG 5 cut(s) 328, 511, 977, 1178, 1347
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 571
OliI CACNNNNGTG 1 cut(s) 647
PagI TCATGA 2 cut(s) 324, 1343
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 466
PfeI GAWTC 3 cut(s) 333, 590, 882
PflFI GACNNNGTC 1 cut(s) 545
PkrI GCNGC 1 cut(s) 1333
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 5
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 658
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 2 cut(s) 477, 772
PspGI CCWGG 2 cut(s) 477, 772
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 1183
PsyI GACNNNGTC 1 cut(s) 545
RsaI GTAC 1 cut(s) 1014
RsaNI GTAC 1 cut(s) 1013
RseI CAYNNNNRTG 2 cut(s) 506, 647
SacI GAGCTC 1 cut(s) 658
SaqAI TTAA 6 cut(s) 198, 258, 816, 870, 1017, 1062
SatI GCNGC 1 cut(s) 1332
Sau3AI GATC 2 cut(s) 1183, 1288
Sau96I GGNCC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 1014
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 4 cut(s) 245, 479, 774, 857
SduI GDGCHC 2 cut(s) 644, 658
SfaNI GCATC 3 cut(s) 484, 556, 1261
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 2 cut(s) 506, 647
SmlI CTYRAG 2 cut(s) 806, 982
SmoI CTYRAG 2 cut(s) 806, 982
Sse9I AATT 5 cut(s) 61, 432, 450, 471, 1196
SsiI CCGC 3 cut(s) 11, 617, 901
SspI AATATT 2 cut(s) 1005, 1035
SspMI CTAG 3 cut(s) 209, 342, 1079
SstI GAGCTC 1 cut(s) 658
StyD4I CCNGG 4 cut(s) 243, 477, 772, 855
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 3 cut(s) 130, 796, 993
TasI AATT 5 cut(s) 61, 432, 450, 471, 1196
TatI WGTACW 1 cut(s) 1012
TfiI GAWTC 3 cut(s) 333, 590, 882
Tru1I TTAA 6 cut(s) 198, 258, 816, 870, 1017, 1062
Tru9I TTAA 6 cut(s) 198, 258, 816, 870, 1017, 1062
TscAI CASTG 3 cut(s) 124, 343, 444
TseI GCWGC 1 cut(s) 1331
TspRI CASTG 3 cut(s) 124, 343, 444
Tth111I GACNNNGTC 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 1 cut(s) 1196
XmnI GAANNNNTTC 1 cut(s) 466
XspI CTAG 3 cut(s) 209, 342, 1079
ZrmI AGTACT 1 cut(s) 1014
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.