RLG00000008839
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000329
Physical Location & Seq
Reverse (-)
40681807 .. 40682543
737 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008839

Sequence Viewer

Length: 492 bp
ATGGTTGATCCACAACAAGAAGGGGAAAAAAATGGGAATTATGAGCAGTGGACCAAGGAAGAGAGTGATACCTTATTAGAACTAATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCAACTTAAGTAACTCCGGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTTTAATGAAGTATGGGAGGAATACCTTAAGGTTCACCCAAAGGACATCGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCAGTTGGGAAAAACTCGGTCGGGATGGGTAGTGTTACTAATGCAAAAACATTAGGTGTTGCTGAAGGTAGAGAGGTATGGATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAATTTTGGAGGTTCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

164

Amino Acids

18.2

Weight (kDa)

4.25

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 2
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 102
AflII CTTAAG 2 cut(s) 130, 206
AgsI TTSAA 1 cut(s) 159
AjuI GAANNNNNNNTTGG 4 cut(s) 261, 293, 396, 428
AlwI GGATC 1 cut(s) 2
ApoI RAATTY 1 cut(s) 471
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 51, 416
AsuHPI GGTGA 2 cut(s) 206, 444
AvaII GGWCC 2 cut(s) 51, 416
BbsI GAAGAC 1 cut(s) 384
BccI CCATC 3 cut(s) 102, 310, 442
BceAI ACGGC 1 cut(s) 83
BfrI CTTAAG 2 cut(s) 130, 206
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 51, 416
BmgT120I GGNCC 2 cut(s) 51, 416
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 3 cut(s) 113, 321, 442
BseLI CCNNNNNNNGG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 2
BspTI CTTAAG 2 cut(s) 130, 206
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 2 cut(s) 130, 206
BstF5I GGATG 3 cut(s) 113, 321, 442
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 384
BtsCI GGATG 3 cut(s) 113, 321, 442
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 51, 416
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 51, 416
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaiI YATR 7 cut(s) 42, 193, 240, 258, 370, 390, 395
FaqI GGGAC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 3 cut(s) 120, 328, 429
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 237
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 206, 444
Hpy166II GTNNAC 3 cut(s) 51, 174, 214
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 3 cut(s) 51, 174, 214
HpyAV CCTTC 2 cut(s) 14, 350
HpyCH4V TGCA 1 cut(s) 335
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 2 cut(s) 154, 480
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 113, 134, 325
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 71, 389
MluCI AATT 3 cut(s) 37, 270, 471
MmeI TCCRAC 2 cut(s) 394, 470
MnlI CCTC 6 cut(s) 162, 190, 253, 358, 467, 472
MseI TTAA 3 cut(s) 131, 183, 207
MspCI CTTAAG 2 cut(s) 130, 206
MspI CCGG 1 cut(s) 141
NdeII GATC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 51, 416
SaqAI TTAA 3 cut(s) 131, 183, 207
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 51, 416
SetI ASST 8 cut(s) 74, 173, 207, 213, 349, 361, 369, 483
SfaNI GCATC 1 cut(s) 82
SgeI CNNG 9 cut(s) 29, 67, 125, 153, 244, 277, 319, 325, 479
SinI GGWCC 2 cut(s) 51, 416
SmlI CTYRAG 2 cut(s) 130, 206
SmoI CTYRAG 2 cut(s) 130, 206
Sse9I AATT 3 cut(s) 37, 270, 471
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 298
TasI AATT 3 cut(s) 37, 270, 471
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 131, 183, 207
Tru9I TTAA 3 cut(s) 131, 183, 207
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 53
Vha464I CTTAAG 2 cut(s) 130, 206
VpaK11BI GGWCC 2 cut(s) 51, 416
XapI RAATTY 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.