Rroxscaffold_5G00349510
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000329
Physical Location & Seq
Reverse (-)
22517457 .. 22522798
5342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349510.1

Sequence Viewer

Length: 576 bp
ATGTTCGATCCACCATGGCCGGTAGACATATACGCTCCTATAAGAAGCACACAGATAGGTGTAAATCCTCAAAAGCTCGCAACCGTAGGAGGATATAATTCACCTTCACTAGATCTTTGTTTGGAGGAACGAATTCTTCGCAGTAACACCGAAGAGAAAGACACACAGCGAGAGAGGAGAAAAATATTCAAGAAACAAGAGGCCAAGACTCTGCCAAAACAGAGAGCGAAATCAAAGCAGCTCAAAGGGAGAAGTTCAGGCTCACCCGACGATACCAACTTACGTTATGGGATATTTCAAGATTATGAGGACTTGGAGATTGCTATTGGGGATGGTGTTGCTGTTGGGAAAAACTCAATCGGGTTGGGTGGCGCTACCGATGCAAGAACATTAGGTGTTGGAGAAGGTAGAGATATATGCATAGAAGACTTCGATTATAATGTAGATAGTGATGTTAAATTACTTCATCCTAGAGTAATGGAAAGAGAAAAAATAGATGACAAAGAAATTGAAGAAGAACTTTATGAAAAAGTTGAGTATTTATTGATGGCAATTGAAGCAGTAATCGTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

191

Amino Acids

21.53

Weight (kDa)

4.9

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccI GTMKAC 1 cut(s) 24
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 132
AgsI TTSAA 4 cut(s) 190, 299, 512, 557
AluBI AGCT 2 cut(s) 76, 241
AluI AGCT 2 cut(s) 76, 241
AlwI GGATC 1 cut(s) 2
AoxI GGCC 2 cut(s) 17, 201
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 93, 255
BbsI GAAGAC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 326, 541
BfaI CTAG 2 cut(s) 110, 471
BfoI RGCGCY 1 cut(s) 375
BglII AGATCT 1 cut(s) 112
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 337, 466
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 2 cut(s) 19, 203
BsiSI CCGG 1 cut(s) 20
BsnI GGCC 2 cut(s) 19, 203
Bsp143I GATC 2 cut(s) 7, 112
Bsp19I CCATGG 1 cut(s) 14
BspANI GGCC 2 cut(s) 19, 203
BspPI GGATC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 7, 112
BssT1I CCWWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 337, 466
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 2 cut(s) 10, 115
BstMBI GATC 2 cut(s) 7, 112
BstMWI GCNNNNNNNGC 2 cut(s) 380, 557
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 2 cut(s) 19, 203
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 2 cut(s) 337, 466
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 19
CviAII CATG 1 cut(s) 15
CviJI RGCY 5 cut(s) 19, 76, 203, 241, 261
CviKI_1 RGCY 5 cut(s) 19, 76, 203, 241, 261
DpnI GATC 2 cut(s) 9, 114
DpnII GATC 2 cut(s) 7, 112
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 1 cut(s) 18
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FatI CATG 1 cut(s) 14
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 2 cut(s) 344, 453
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 2 cut(s) 110, 471
GlaI GCGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 2 cut(s) 19, 203
HapII CCGG 1 cut(s) 20
HhaI GCGC 1 cut(s) 374
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 93, 255
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 190, 299
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 114, 398
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 383, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 557
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 372
Kzo9I GATC 2 cut(s) 7, 112
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 33, 243
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 110, 471
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 9, 114
MboI GATC 2 cut(s) 7, 112
MboII GAAGA 5 cut(s) 128, 164, 437, 524, 527
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 1 cut(s) 112
MluCI AATT 5 cut(s) 97, 132, 458, 507, 552
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 6 cut(s) 78, 83, 118, 168, 193, 301
Mph1103I ATGCAT 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 456
MspI CCGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 380, 557
NcoI CCATGG 1 cut(s) 14
NdeII GATC 2 cut(s) 7, 112
NlaIII CATG 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PsiI TTATAA 1 cut(s) 438
PsuI RGATCY 1 cut(s) 112
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 2 cut(s) 7, 112
SchI GAGTC 1 cut(s) 202
SetI ASST 7 cut(s) 61, 78, 106, 243, 286, 397, 409
SfaNI GCATC 1 cut(s) 370
Sse9I AATT 5 cut(s) 97, 132, 458, 507, 552
SspI AATATT 1 cut(s) 186
SspMI CTAG 2 cut(s) 110, 471
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 6, 432
TasI AATT 5 cut(s) 97, 132, 458, 507, 552
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 455, 540
XapI RAATTY 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 2 cut(s) 110, 471
Zsp2I ATGCAT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.