RLG00000023200
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000329
Physical Location & Seq
Reverse (-)
19805213 .. 19806067
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023200

Sequence Viewer

Length: 714 bp
ATGGAACCTCCGCAACAAGTAGAGGGCAAAGGAGCAAAAGAAGAGGGAAAGGATGTGGGAGATTATAACAAATGGAGTAATGAAGAGAGCAATGAGTTACTGCAAGTCTTAGTTGATGCTGCCAAACGTGGTTGGCGCGATCCTCAAAGTGTGGGAAACAGAATTGCAACAGGAAAGTTTTCAATTTGCTTGGGCGATGATATTAATGCAACCACATACATGGTTGAGGAAAGTGAAAGTGGTGCTTTGAATGACTTGGTCTATAACAAAAATGCTGATACATTCATACCAACAGGGGATGAATCATCATTCCAAGGTTATTCACCACCGCCATCATCCTTACCTTTTGAGGGCACAAATGTGGGAGTTCCTAATAACAATGTGGAAAAGAATACTGGAAGTAGTGCAACTGGAAAACGCAACAAGAATGAGTTTGAGAGAAATAATAGCTTGACTGATGATATTTCTGAAGCTGATGTTAGGAAAAGCATTGGTTCCATTGCCACCAATTTCAACAAAATGTATAGCCTAATGGAGAAAAGAGAATCAAGGGATACAGAATGCTGGAATGCTATTAAGGACACTCCAGGCTTGAATGATGAAGCACGTTACTTGGCTCTTGAGTTGCTCAATACTAAAGCATTGAAGGATGTTTTTCTGGAAATGACCCTGAAGGAGCGATTTAAGTGGATTGGATTCAAGACAATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

238

Amino Acids

26.44

Weight (kDa)

4.77

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 188 - 234 2.1e-19 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 11, 329
AclWI GGATC 1 cut(s) 134
AcuI CTGAAG 2 cut(s) 489, 692
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 6 cut(s) 183, 250, 514, 595, 646, 700
AjnI CCWGG 1 cut(s) 586
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 2 cut(s) 450, 473
AluI AGCT 2 cut(s) 450, 473
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 119
AseI ATTAAT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 178
AspLEI GCGC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 588
BciVI GTATCC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 6, 496
BmrFI CCNGG 1 cut(s) 588
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 400, 415
Bse3DI GCAATG 2 cut(s) 97, 498
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 4 cut(s) 58, 304, 335, 655
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 2 cut(s) 97, 498
BseNI ACTGG 2 cut(s) 400, 415
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 350
BsmI GAATGC 2 cut(s) 566, 574
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 11, 329
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 6, 496
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 97, 498
BsrI ACTGG 2 cut(s) 400, 415
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 588
Bst6I CTCTTC 2 cut(s) 36, 78
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 4 cut(s) 58, 304, 335, 655
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 356
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuI GTATCC 1 cut(s) 547
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 4 cut(s) 58, 304, 335, 655
CfoI GCGC 1 cut(s) 138
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 450, 473, 528, 591, 617
CviKI_1 RGCY 5 cut(s) 450, 473, 528, 591, 617
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 36, 78
EarI CTCTTC 2 cut(s) 36, 78
Eco130I CCWWGG 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 489, 692
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 223
FaiI YATR 6 cut(s) 66, 217, 221, 264, 287, 525
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 4 cut(s) 65, 311, 322, 662
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 570
HhaI GCGC 1 cut(s) 138
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 3 cut(s) 302, 545, 696
HphI GGTGA 1 cut(s) 315
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 3 cut(s) 620, 659, 700
HpyAV CCTTC 2 cut(s) 640, 667
HpyCH4IV ACGT 2 cut(s) 127, 607
HpyCH4V TGCA 5 cut(s) 103, 167, 209, 407, 709
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 2 cut(s) 127, 607
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 2 cut(s) 32, 676
LpnPI CCDG 9 cut(s) 156, 279, 381, 396, 550, 573, 600, 644, 683
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 106
MaeII ACGT 2 cut(s) 127, 607
MaeIII GTNAC 2 cut(s) 96, 608
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 53, 95
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 3 cut(s) 162, 183, 508
MnlI CCTC 6 cut(s) 16, 18, 37, 153, 220, 343
MroXI GAANNNNTTC 1 cut(s) 178
MseI TTAA 3 cut(s) 204, 576, 684
MslI CAYNNNNRTG 2 cut(s) 218, 359
MspR9I CCNGG 1 cut(s) 588
Mva1269I GAATGC 2 cut(s) 566, 574
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 1 cut(s) 138
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 6, 496
OliI CACNNNNGTG 1 cut(s) 359
PctI GAATGC 2 cut(s) 566, 574
PdmI GAANNNNTTC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 302, 545, 696
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 204
PsiI TTATAA 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 586
PspGI CCWGG 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 6, 496
PsyI GACNNNGTC 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 218, 359
SaqAI TTAA 3 cut(s) 204, 576, 684
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 588
SduI GDGCHC 1 cut(s) 356
SetI ASST 7 cut(s) 10, 130, 319, 346, 452, 475, 610
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 218, 359
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 3 cut(s) 162, 183, 508
SsiI CCGC 2 cut(s) 11, 329
StyD4I CCNGG 1 cut(s) 586
StyI CCWWGG 1 cut(s) 313
TaiI ACGT 2 cut(s) 130, 610
TasI AATT 3 cut(s) 162, 183, 508
TfiI GAWTC 3 cut(s) 302, 545, 696
Tru1I TTAA 3 cut(s) 204, 576, 684
Tru9I TTAA 3 cut(s) 204, 576, 684
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 96, 274, 315, 615
Tth111I GACNNNGTC 1 cut(s) 257
VspI ATTAAT 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.