Rmu_sc0003113.1_g000004
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003113.1
OG0000329
Physical Location & Seq
Reverse (-)
9400 .. 10104
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003113.1_g000004.1.cds

Sequence Viewer

Length: 585 bp
atggttgatccacaacaagatgggaaaaaaaatgggaattatgagcagtggaccaaggaagagagtgataccttattagaactaatggttgatgccgccgttaggggatggcgtgacaatagtggcatcttaagtaagcaaacagtggaagaaagaatacttcctgttcttaatgcaaaacttgggtgtcacaagacatacaaaaactaccaaagcagggttagatggtttaaaggtcgatggaactcttactctacccttatgtgttttagctctggttttggatttgattcaactacaaagaggtttactgcttctaatgaagtatgggtgcaataccttaaggacaccaacttgcgctatgggacatttgatgattatgaggacttggaaattgctattgggaatggtgtagcggttggaaaaaactcggtcgggttgggtagtgttactgatgcaagaacattaggtgttggtgaaggtagagaggcatgcatagaagactttgattatgatatagattgtgaagcatttgttggaccaaatcaaaataatccctcaactcatccaacatcacccctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

194

Amino Acids

21.8

Weight (kDa)

4.91

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 96, 416
AclWI GGATC 1 cut(s) 2
AfiI CCNNNNNNNGG 2 cut(s) 102, 217
AflII CTTAAG 2 cut(s) 130, 341
AgsI TTSAA 1 cut(s) 294
AjuI GAANNNNNNNTTGG 4 cut(s) 384, 416, 519, 551
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
AlwI GGATC 1 cut(s) 2
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 51, 539
AsuHPI GGTGA 2 cut(s) 488, 567
AvaII GGWCC 2 cut(s) 51, 539
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 507
BccI CCATC 4 cut(s) 14, 102, 219, 234
BceAI ACGGC 1 cut(s) 83
BfrI CTTAAG 2 cut(s) 130, 341
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 51, 539
BmgT120I GGNCC 2 cut(s) 51, 539
BmsI GCATC 3 cut(s) 82, 135, 445
BpiI GAAGAC 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 217
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 113, 565
BseLI CCNNNNNNNGG 2 cut(s) 102, 217
Bsh1285I CGRYCG 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 102, 217
BsmFI GGGAC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 96, 416
BspPI GGATC 1 cut(s) 2
BspTI CTTAAG 2 cut(s) 130, 341
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 2 cut(s) 130, 341
BstC8I GCNNGC 1 cut(s) 493
BstF5I GGATG 2 cut(s) 113, 565
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 495
BstV2I GAAGAC 1 cut(s) 507
BtsCI GGATG 2 cut(s) 113, 565
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 53, 150
Cac8I GCNNGC 1 cut(s) 493
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 51, 539
CviAII CATG 1 cut(s) 492
CviJI RGCY 1 cut(s) 273
CviKI_1 RGCY 1 cut(s) 273
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 51, 539
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 495
FaqI GGGAC 1 cut(s) 379
FatI CATG 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 120, 552
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 359
GluI GCNGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 360
Hin1II CATG 1 cut(s) 495
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HinfI GANTC 1 cut(s) 290
HphI GGTGA 2 cut(s) 488, 567
Hpy166II GTNNAC 2 cut(s) 51, 309
Hpy8I GTNNAC 2 cut(s) 51, 309
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 176, 334, 458, 495
Hsp92II CATG 1 cut(s) 495
HspAI GCGC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 3 cut(s) 177, 202, 261
LweI GCATC 3 cut(s) 82, 135, 445
MaeIII GTNAC 3 cut(s) 113, 188, 448
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 3 cut(s) 71, 161, 512
MluCI AATT 2 cut(s) 37, 393
MmeI TCCRAC 2 cut(s) 400, 517
MnlI CCTC 4 cut(s) 297, 376, 481, 568
Mph1103I ATGCAT 1 cut(s) 497
MseI TTAA 4 cut(s) 131, 171, 231, 342
MspCI CTTAAG 2 cut(s) 130, 341
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 113, 188
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 1 cut(s) 495
PaeI GCATGC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 51, 539
SaqAI TTAA 4 cut(s) 131, 171, 231, 342
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 51, 539
SetI ASST 7 cut(s) 74, 238, 275, 308, 342, 472, 484
SfaNI GCATC 3 cut(s) 82, 135, 445
SinI GGWCC 2 cut(s) 51, 539
SmlI CTYRAG 2 cut(s) 130, 341
SmoI CTYRAG 2 cut(s) 130, 341
SphI GCATGC 1 cut(s) 495
Sse9I AATT 2 cut(s) 37, 393
SsiI CCGC 2 cut(s) 96, 416
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 238
TaqII GACCGA 1 cut(s) 421
TasI AATT 2 cut(s) 37, 393
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 131, 171, 231, 342
Tru9I TTAA 4 cut(s) 131, 171, 231, 342
TscAI CASTG 2 cut(s) 53, 150
TseFI GTSAC 2 cut(s) 113, 188
Tsp45I GTSAC 2 cut(s) 113, 188
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 2 cut(s) 53, 150
Vha464I CTTAAG 2 cut(s) 130, 341
VpaK11BI GGWCC 2 cut(s) 51, 539
XceI RCATGY 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.