Rroxscaffold_4G00300200
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000329
Physical Location & Seq
Reverse (-)
20372878 .. 20373753
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300200.1

Sequence Viewer

Length: 555 bp
ATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGTCACATCCAACGCATGGGCACTTTCGGTCGAAACTTTTCCGGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACCGGAATGGGCTCAATCGGTCTAGGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGAATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAGTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGGCTCAAAAGGGGCTACGGGTAAGGCTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTTTTGGATGCTATGAAGGAGACTCCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

184

Amino Acids

19.61

Weight (kDa)

4.48

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 11, 317
AccB7I CCANNNNNTGG 1 cut(s) 54
AccBSI CCGCTC 1 cut(s) 179
AccIII TCCGGA 2 cut(s) 79, 547
AciI CCGC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 252, 319
AfiI CCNNNNNNNGG 2 cut(s) 54, 314
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 8, 97
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 536
Aor13HI TCCGGA 2 cut(s) 79, 547
ApoI RAATTY 1 cut(s) 480
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 61
BanI GGYRCC 2 cut(s) 11, 317
BanII GRGCYC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 209, 298
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 2 cut(s) 146, 431
BfoI RGCGCY 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 13, 319
BmsI GCATC 3 cut(s) 151, 319, 520
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 3 cut(s) 79, 125, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 314
Bse1I ACTGG 1 cut(s) 321
BseAI TCCGGA 2 cut(s) 79, 547
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 44, 535
BseLI CCNNNNNNNGG 2 cut(s) 54, 314
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 69
BshNI GGYRCC 2 cut(s) 11, 317
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 3 cut(s) 80, 126, 548
BslI CCNNNNNNNGG 2 cut(s) 54, 314
BsmAI GTCTC 1 cut(s) 536
Bsp1286I GDGCHC 2 cut(s) 61, 137
Bsp13I TCCGGA 2 cut(s) 79, 547
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 415
BspEI TCCGGA 2 cut(s) 79, 547
BspLI GGNNCC 2 cut(s) 13, 319
BspT107I GGYRCC 2 cut(s) 11, 317
BsrBI CCGCTC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 494
BstACI GRCGYC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 44, 535
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 1 cut(s) 229
BstMCI CGRYCG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 44, 535
CfoI GCGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 251, 318
CviAII CATG 2 cut(s) 54, 244
CviJI RGCY 6 cut(s) 135, 338, 399, 410, 422, 489
CviKI_1 RGCY 6 cut(s) 135, 338, 399, 410, 422, 489
CviQI GTAC 2 cut(s) 251, 318
DdeI CTNAG 1 cut(s) 423
DinI GGCGCC 1 cut(s) 13
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 57, 247
FaiI YATR 8 cut(s) 55, 87, 212, 245, 326, 348, 384, 536
FatI CATG 2 cut(s) 53, 243
FokI GGATG 2 cut(s) 31, 542
FriOI GRGCYC 1 cut(s) 137
FspBI CTAG 2 cut(s) 146, 431
GlaI GCGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 3 cut(s) 80, 126, 548
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 57, 247
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 5 cut(s) 191, 266, 355, 506, 544
HpaII CCGG 3 cut(s) 80, 126, 548
HphI GGTGA 1 cut(s) 161
Hpy188III TCNNGA 5 cut(s) 29, 80, 431, 510, 548
HpyAV CCTTC 1 cut(s) 532
HpyCH4V TGCA 3 cut(s) 104, 122, 164
HpyF3I CTNAG 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 57, 247
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
Kpn2I TCCGGA 2 cut(s) 79, 547
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 3 cut(s) 176, 337, 343
LpnPI CCDG 5 cut(s) 93, 139, 334, 337, 348
LweI GCATC 3 cut(s) 151, 319, 520
MaeI CTAG 2 cut(s) 146, 431
MaeIII GTNAC 3 cut(s) 40, 463, 518
MalI GATC 1 cut(s) 231
MbiI CCGCTC 1 cut(s) 179
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 511
MhlI GDGCHC 2 cut(s) 61, 137
MluCI AATT 4 cut(s) 99, 201, 459, 480
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 3 cut(s) 275, 349, 538
MmeI TCCRAC 2 cut(s) 72, 88
MnlI CCTC 4 cut(s) 82, 175, 319, 418
MroI TCCGGA 2 cut(s) 79, 547
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 3 cut(s) 36, 491, 553
MspI CCGG 3 cut(s) 80, 126, 548
NarI GGCGCC 1 cut(s) 12
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 57, 247
NlaIV GGNNCC 2 cut(s) 13, 319
NmuCI GTSAC 3 cut(s) 40, 463, 518
NspI RCATGY 1 cut(s) 247
PciI ACATGT 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 191, 506
PflMI CCANNNNNTGG 1 cut(s) 54
PleI GAGTC 3 cut(s) 274, 349, 538
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 3 cut(s) 274, 349, 538
PscI ACATGT 1 cut(s) 243
PshBI ATTAAT 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 13, 319
RsaI GTAC 2 cut(s) 252, 319
RsaNI GTAC 2 cut(s) 251, 318
SaqAI TTAA 3 cut(s) 36, 491, 553
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 3 cut(s) 275, 349, 538
SduI GDGCHC 2 cut(s) 61, 137
SetI ASST 5 cut(s) 151, 319, 340, 429, 525
SfaNI GCATC 3 cut(s) 151, 319, 520
SfoI GGCGCC 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 4 cut(s) 99, 201, 459, 480
SsiI CCGC 1 cut(s) 179
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 2 cut(s) 146, 431
StyI CCWWGG 1 cut(s) 313
TaqI TCGA 2 cut(s) 69, 232
TaqII GACCGA 2 cut(s) 55, 131
TasI AATT 4 cut(s) 99, 201, 459, 480
TfiI GAWTC 2 cut(s) 191, 506
Tru1I TTAA 3 cut(s) 36, 491, 553
Tru9I TTAA 3 cut(s) 36, 491, 553
TseFI GTSAC 3 cut(s) 40, 463, 518
Tsp45I GTSAC 3 cut(s) 40, 463, 518
TspDTI ATGAA 3 cut(s) 204, 399, 551
TspGWI ACGGA 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 54
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 1 cut(s) 480
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 146, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.