RLG00000019298
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000329
Physical Location & Seq
Forward (+)
49939309 .. 49939910
602 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019298

Sequence Viewer

Length: 501 bp
ATGCATCATAGTTATGGATTTGGGTGGGATCCGATCACAAAGAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATACCACAACATTTGGAGCAGAAGAAAACGGACCTTGGAGAATTGATGGATTAGTTTTTTATCGAAATACTAACATGTTCCTGCAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAATGTAGATGGTCCACCACATAGCAGGACTCAAGGAAAATGGAGTAGGGCTGACTATGACAATATTAGCAGCTCAAAGGGGGCAACTGGTTACCTAATAAGGAATAGGCTATGTTCTATTATTAATTTTAAGTTATGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

167

Amino Acids

18.6

Weight (kDa)

5.38

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 98
AclWI GGATC 2 cut(s) 23, 36
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 98, 350
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 2 cut(s) 82, 142
AluBI AGCT 1 cut(s) 429
AluI AGCT 1 cut(s) 429
AlwI GGATC 2 cut(s) 23, 36
ApeKI GCWGC 1 cut(s) 426
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 236, 368
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 236, 368
BaeGI GKGCMC 1 cut(s) 105
BaeI ACNNNNGTAYC 2 cut(s) 345, 378
BamHI GGATCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 438
BccI CCATC 3 cut(s) 245, 334, 359
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 236, 368
BmgT120I GGNCC 2 cut(s) 236, 368
BmiI GGNNCC 2 cut(s) 30, 355
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 239, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 350
Bse1I ACTGG 2 cut(s) 175, 448
BseDI CCNNGG 2 cut(s) 239, 349
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 98, 350
BseNI ACTGG 2 cut(s) 175, 448
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 1 cut(s) 438
BshNI GGYRCC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 98, 350
Bsp1286I GDGCHC 2 cut(s) 105, 182
Bsp143I GATC 2 cut(s) 28, 33
BspLI GGNNCC 2 cut(s) 30, 355
BspPI GGATC 2 cut(s) 23, 36
BspT107I GGYRCC 1 cut(s) 353
BsrI ACTGG 2 cut(s) 175, 448
BssECI CCNNGG 2 cut(s) 239, 349
BssMI GATC 2 cut(s) 28, 33
BssT1I CCWWGG 2 cut(s) 239, 349
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 2 cut(s) 31, 36
BstMBI GATC 2 cut(s) 28, 33
BstNSI RCATGY 1 cut(s) 283
BstPI GGTNACC 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 236, 368
Csp6I GTAC 1 cut(s) 354
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 2 cut(s) 98, 280
CviJI RGCY 4 cut(s) 180, 407, 429, 466
CviKI_1 RGCY 4 cut(s) 180, 407, 429, 466
CviQI GTAC 1 cut(s) 354
DpnI GATC 2 cut(s) 30, 35
DpnII GATC 2 cut(s) 28, 33
Eco130I CCWWGG 2 cut(s) 239, 349
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 236, 368
Eco91I GGTNACC 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 446
EcoT14I CCWWGG 2 cut(s) 239, 349
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 239, 349
FaeI CATG 2 cut(s) 101, 283
FatI CATG 2 cut(s) 97, 279
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 427
Hin1II CATG 2 cut(s) 101, 283
HinfI GANTC 3 cut(s) 45, 302, 385
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 2 cut(s) 33, 115
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 371
HpyCH4V TGCA 4 cut(s) 4, 149, 167, 289
Hsp92II CATG 2 cut(s) 101, 283
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 28, 33
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 5 cut(s) 138, 156, 299, 367, 429
Lsp1109I GCAGC 1 cut(s) 438
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 2 cut(s) 84, 446
MalI GATC 2 cut(s) 30, 35
MboI GATC 2 cut(s) 28, 33
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 105, 182
MluCI AATT 3 cut(s) 144, 246, 481
MlyI GAGTC 2 cut(s) 311, 379
MmeI TCCRAC 2 cut(s) 116, 133
MnlI CCTC 2 cut(s) 127, 355
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 480, 486
MslI CAYNNNNRTG 1 cut(s) 12
NdeII GATC 2 cut(s) 28, 33
NlaIII CATG 2 cut(s) 101, 283
NlaIV GGNNCC 2 cut(s) 30, 355
NmuCI GTSAC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 283
PciI ACATGT 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 2 cut(s) 310, 379
PpsI GAGTC 2 cut(s) 310, 379
PscI ACATGT 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 480
PspEI GGTNACC 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 30, 355
PspPI GGNCC 2 cut(s) 236, 368
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 480, 486
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 2 cut(s) 28, 33
Sau96I GGNCC 2 cut(s) 236, 368
SchI GAGTC 2 cut(s) 311, 379
SduI GDGCHC 2 cut(s) 105, 182
SetI ASST 5 cut(s) 196, 241, 355, 431, 453
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 2 cut(s) 236, 368
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 3 cut(s) 144, 246, 481
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 2 cut(s) 239, 349
TaqI TCGA 1 cut(s) 268
TaqII GACCGA 1 cut(s) 99
TasI AATT 3 cut(s) 144, 246, 481
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 2 cut(s) 480, 486
Tru9I TTAA 2 cut(s) 480, 486
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 236, 368
VspI ATTAAT 1 cut(s) 480
XceI RCATGY 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.