RchiOBHm_Chr3g0497311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000329
Physical Location & Seq
Reverse (-)
49157907 .. 49163327
5421 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45951

Sequence Viewer

Length: 165 bp
ATGAGGCCAATAGAAACCAATGAAGAGGAGATTAGAACTGTTGAAGCCACTAATGAGTGGATTGTATTTCGTGATCAATTGGCGATGCATATGTTTGCTGACTATCAAAGGCGTCGAGCTCAACAAGCGCAACAAGAACAAGGAGACCTTGCAAATGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.45

Weight (kDa)

4.72

Isoelectric Point (pI)

70.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 112
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 138
BmsI GCATC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 7
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 138
BssMI GATC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 112
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 98
CfoI GCGC 1 cut(s) 130
CseI GACGC 1 cut(s) 101
CviJI RGCY 3 cut(s) 7, 47, 119
CviKI_1 RGCY 3 cut(s) 7, 47, 119
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 121
FaiI YATR 3 cut(s) 90, 92, 163
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FauNDI CATATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 121
FspEI CC 9 cut(s) 11, 21, 31, 43, 61, 65, 94, 126, 161
GlaI GCGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 7
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 71
Hpy99I CGWCG 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 88, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 112
HspAI GCGC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LweI GCATC 1 cut(s) 75
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 35
MfeI CAATTG 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 77
MnlI CCTC 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 90
MunI CAATTG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeI CATATG 1 cut(s) 90
NdeII GATC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 121
SacI GAGCTC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 73
SduI GDGCHC 1 cut(s) 121
SetI ASST 2 cut(s) 121, 150
SfaNI GCATC 1 cut(s) 75
SgeI CNNG 6 cut(s) 83, 128, 137, 146, 152, 161
Sse9I AATT 1 cut(s) 77
SstI GAGCTC 1 cut(s) 121
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 115
TasI AATT 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 36, 150
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.