RLG00000026869
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000329
Physical Location & Seq
Reverse (-)
6643917 .. 6644977
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026869

Sequence Viewer

Length: 858 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAAGATTACAAAACTTGGAATGCTGAAGAGAGCAATGTTTTGCTTCAACTTATGGTTGAAGGAGCCAAACTTGGATTGCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTGAAGGAAAAACTTGATCCGATCACAAAGAGATTCACTACTGATGATGAAGTGTGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTTAATCAATCTAGGTGATGATACAGATGCCACAACATTTGGAGCGGAAGAAAACGGACCTTGGGGAATTGATGGATTAGTTTTTTATCGAAATACTAACATGTTCGTGCAAAGTGAAAATAAGTCATCACACCAAGAAAACTCGTCATCTCTTTCACAACAACCCTCCCAAGGTACTAATGTAGATGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGGGCTGACTATGAAAATAATAGCGGCTCAAAGGGGGCAACTAGTCAGGCTGAGGTTTTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAGTTTGTAGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGATCTTTTGGATGCTATGAAGGAGACCCCAGGATTAACTGATGAGGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAACGACATAATTGGATCACCTATAAACAAATGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

286

Amino Acids

31.72

Weight (kDa)

5.37

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 238 - 282 7.7e-21 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 251
AccBSI CCGCTC 1 cut(s) 377
AciI CCGC 2 cut(s) 377, 579
AclWI GGATC 2 cut(s) 176, 842
AcuI CTGAAG 2 cut(s) 75, 188
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 251, 503
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 5 cut(s) 77, 89, 235, 295, 805
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 1 cut(s) 730
AluBI AGCT 2 cut(s) 154, 672
AluI AGCT 2 cut(s) 154, 672
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 2 cut(s) 176, 842
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 359, 829
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 258
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BbvCI CCTCAGC 1 cut(s) 606
BccI CCATC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 719
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 2 cut(s) 344, 597
BisI GCNGC 1 cut(s) 580
BlsI GCNGC 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 732
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 732
BmsI GCATC 3 cut(s) 349, 508, 703
Bpu10I CCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 3 cut(s) 392, 502, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 503
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 392, 502, 730
BseGI GGATG 2 cut(s) 241, 718
BseLI CCNNNNNNNGG 2 cut(s) 251, 503
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 258
BslI CCNNNNNNNGG 2 cut(s) 251, 503
BsmAI GTCTC 1 cut(s) 719
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 4 cut(s) 181, 186, 703, 834
BspACI CCGC 2 cut(s) 377, 579
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 176, 842
BspTNI GGTCTC 1 cut(s) 719
BsrBI CCGCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 392, 502, 730
BssMI GATC 4 cut(s) 181, 186, 703, 834
BssT1I CCWWGG 2 cut(s) 392, 502
Bst2UI CCWGG 1 cut(s) 732
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 51, 677
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 241, 718
BstKTI GATC 4 cut(s) 184, 189, 706, 837
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 4 cut(s) 181, 186, 703, 834
BstNI CCWGG 1 cut(s) 732
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 730
BstSLI GKGCMC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 241, 718
Cac8I GCNNGC 1 cut(s) 751
Cfr13I GGNCC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 507
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 2 cut(s) 251, 433
CviJI RGCY 9 cut(s) 95, 154, 333, 560, 582, 605, 672, 749, 761
CviKI_1 RGCY 9 cut(s) 95, 154, 333, 560, 582, 605, 672, 749, 761
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 1 cut(s) 606
DpnI GATC 4 cut(s) 183, 188, 705, 836
DpnII GATC 4 cut(s) 181, 186, 703, 834
Eam1104I CTCTTC 2 cut(s) 51, 677
EarI CTCTTC 2 cut(s) 51, 677
Eco130I CCWWGG 2 cut(s) 392, 502
Eco31I GGTCTC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 2 cut(s) 75, 188
EcoRII CCWGG 1 cut(s) 730
EcoT14I CCWWGG 2 cut(s) 392, 502
ErhI CCWWGG 2 cut(s) 392, 502
FaeI CATG 2 cut(s) 254, 436
FatI CATG 2 cut(s) 250, 432
Fnu4HI GCNGC 1 cut(s) 580
FokI GGATG 2 cut(s) 228, 725
Fsp4HI GCNGC 1 cut(s) 580
FspBI CTAG 2 cut(s) 344, 597
GluI GCNGC 1 cut(s) 580
Hin1II CATG 2 cut(s) 254, 436
HinfI GANTC 5 cut(s) 8, 198, 538, 689, 811
HphI GGTGA 2 cut(s) 359, 829
Hpy188I TCNGA 2 cut(s) 186, 268
Hpy188III TCNNGA 5 cut(s) 278, 693, 764, 802, 815
HpyAV CCTTC 3 cut(s) 83, 163, 715
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 4 cut(s) 302, 320, 442, 853
HpyF3I CTNAG 1 cut(s) 606
Hsp92II CATG 2 cut(s) 254, 436
Kzo9I GATC 4 cut(s) 181, 186, 703, 834
LmnI GCTCC 3 cut(s) 92, 374, 526
LpnPI CCDG 7 cut(s) 291, 309, 520, 587, 717, 744, 828
LweI GCATC 3 cut(s) 349, 508, 703
MaeI CTAG 2 cut(s) 344, 597
MaeIII GTNAC 2 cut(s) 237, 646
MalI GATC 4 cut(s) 183, 188, 705, 836
MbiI CCGCTC 1 cut(s) 377
MboI GATC 4 cut(s) 181, 186, 703, 834
MboII GAAGA 5 cut(s) 68, 392, 694, 790, 817
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 297, 399, 642, 829
MlyI GAGTC 2 cut(s) 532, 805
MmeI TCCRAC 2 cut(s) 269, 286
MnlI CCTC 5 cut(s) 139, 280, 508, 601, 739
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 5 cut(s) 117, 335, 674, 737, 774
MslI CAYNNNNRTG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 732
NdeII GATC 4 cut(s) 181, 186, 703, 834
NlaIII CATG 2 cut(s) 254, 436
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 237, 646
NspI RCATGY 1 cut(s) 436
PciI ACATGT 1 cut(s) 432
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 8, 198, 689
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 1 cut(s) 581
PleI GAGTC 2 cut(s) 532, 805
PpsI GAGTC 2 cut(s) 532, 805
PscI ACATGT 1 cut(s) 432
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 730
PspGI CCWGG 1 cut(s) 730
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 389
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 5 cut(s) 117, 335, 674, 737, 774
SatI GCNGC 1 cut(s) 580
Sau3AI GATC 4 cut(s) 181, 186, 703, 834
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 2 cut(s) 532, 805
ScrFI CCNGG 1 cut(s) 732
SduI GDGCHC 1 cut(s) 258
SetI ASST 7 cut(s) 156, 349, 394, 508, 612, 674, 842
SfaNI GCATC 3 cut(s) 349, 508, 703
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 4 cut(s) 297, 399, 642, 829
SsiI CCGC 2 cut(s) 377, 579
SspMI CTAG 2 cut(s) 344, 597
StyD4I CCNGG 1 cut(s) 730
StyI CCWWGG 2 cut(s) 392, 502
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 421
TaqII GACCGA 1 cut(s) 252
TasI AATT 4 cut(s) 297, 399, 642, 829
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 3 cut(s) 8, 198, 689
Tru1I TTAA 5 cut(s) 117, 335, 674, 737, 774
Tru9I TTAA 5 cut(s) 117, 335, 674, 737, 774
TseFI GTSAC 2 cut(s) 237, 646
Tsp45I GTSAC 2 cut(s) 237, 646
TspDTI ATGAA 3 cut(s) 228, 582, 734
TspGWI ACGGA 2 cut(s) 402, 565
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 389
VspI ATTAAT 1 cut(s) 117
XceI RCATGY 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 2 cut(s) 344, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.