RchiOBHm_Chr6g0281401
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000329
Physical Location & Seq
Reverse (-)
44657024 .. 44660648
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25238

Sequence Viewer

Length: 870 bp
ATGGTTGAAGGCTCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGGGCCATAGTTCTGGATTTGGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGAATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCACAACAACCTTCCCAAGGTACCAGTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGGCTCAAAAGGGGCTACTGGTCAGGCTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTTTTGGATGCTATGAAGGAGACTCCAGGATTAACTGATGAAGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAGCGACTTAATTGGATCACCTATAAACAAATGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

289

Amino Acids

32.24

Weight (kDa)

5.37

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 1.8e-12 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 242 - 286 3.9e-21 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 401
AciI CCGC 1 cut(s) 401
AclWI GGATC 3 cut(s) 200, 213, 854
AcsI RAATTY 1 cut(s) 675
AfaI GTAC 2 cut(s) 474, 514
AfiI CCNNNNNNNGG 2 cut(s) 275, 509
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 8, 259, 319, 817
AjnI CCWGG 1 cut(s) 742
AluBI AGCT 4 cut(s) 73, 175, 533, 761
AluI AGCT 4 cut(s) 73, 175, 533, 761
Alw26I GTCTC 1 cut(s) 731
AlwI GGATC 3 cut(s) 200, 213, 854
AoxI GGCC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 675
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 383, 841
BaeGI GKGCMC 1 cut(s) 282
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 359
BbvCI CCTCAGC 1 cut(s) 618
BccI CCATC 2 cut(s) 218, 431
BciT130I CCWGG 1 cut(s) 744
BcoDI GTCTC 1 cut(s) 731
BfaI CTAG 2 cut(s) 368, 626
BfrI CTTAAG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 744
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 13, 207, 514
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 3 cut(s) 373, 514, 715
BpmI CTGGAG 2 cut(s) 513, 726
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 509
Bse1I ACTGG 3 cut(s) 352, 516, 613
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 2 cut(s) 265, 730
BseLI CCNNNNNNNGG 2 cut(s) 275, 509
BseMII CTCAG 2 cut(s) 185, 609
BseNI ACTGG 3 cut(s) 352, 516, 613
BseSI GKGCMC 1 cut(s) 282
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 275, 509
BsmAI GTCTC 1 cut(s) 731
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 282, 359
Bsp143I GATC 3 cut(s) 205, 451, 846
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 184, 610
BspLI GGNNCC 3 cut(s) 13, 207, 514
BspPI GGATC 3 cut(s) 200, 213, 854
BspT107I GGYRCC 1 cut(s) 512
BspTI CTTAAG 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 401
BsrI ACTGG 3 cut(s) 352, 516, 613
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 3 cut(s) 205, 451, 846
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 689
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 2 cut(s) 171, 618
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 265, 730
BstKTI GATC 3 cut(s) 208, 454, 849
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 3 cut(s) 205, 451, 846
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 742
BstSLI GKGCMC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 265, 730
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 473, 513
CviAII CATG 2 cut(s) 275, 466
CviQI GTAC 2 cut(s) 473, 513
DdeI CTNAG 2 cut(s) 171, 618
DpnI GATC 3 cut(s) 207, 453, 848
DpnII GATC 3 cut(s) 205, 451, 846
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 508
Eco24I GRGCYC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 2 cut(s) 278, 469
FatI CATG 2 cut(s) 274, 465
FokI GGATG 2 cut(s) 252, 737
FriOI GRGCYC 1 cut(s) 359
FspBI CTAG 2 cut(s) 368, 626
GsuI CTGGAG 2 cut(s) 513, 726
HaeIII GGCC 1 cut(s) 183
Hin1II CATG 2 cut(s) 278, 469
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 7 cut(s) 222, 413, 488, 550, 701, 739, 823
HphI GGTGA 2 cut(s) 383, 841
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 8 cut(s) 29, 192, 302, 626, 705, 776, 814, 827
HpyAV CCTTC 2 cut(s) 513, 727
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 326, 344, 386, 865
HpyF3I CTNAG 2 cut(s) 171, 618
Hsp92II CATG 2 cut(s) 278, 469
KpnI GGTACC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 205, 451, 846
LmnI GCTCC 4 cut(s) 17, 398, 532, 538
LweI GCATC 3 cut(s) 373, 514, 715
MaeI CTAG 2 cut(s) 368, 626
MaeIII GTNAC 3 cut(s) 261, 658, 713
MalI GATC 3 cut(s) 207, 453, 848
MbiI CCGCTC 1 cut(s) 401
MboI GATC 3 cut(s) 205, 451, 846
MboII GAAGA 3 cut(s) 706, 802, 829
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 282, 359
MluCI AATT 6 cut(s) 163, 321, 423, 654, 675, 841
MlyI GAGTC 4 cut(s) 497, 544, 733, 817
MmeI TCCRAC 2 cut(s) 293, 310
MnlI CCTC 4 cut(s) 58, 304, 397, 613
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 7 cut(s) 36, 87, 147, 686, 749, 786, 840
MspCI CTTAAG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 744
NdeII GATC 3 cut(s) 205, 451, 846
NlaIII CATG 2 cut(s) 278, 469
NlaIV GGNNCC 3 cut(s) 13, 207, 514
NmuCI GTSAC 3 cut(s) 261, 658, 713
NspI RCATGY 1 cut(s) 469
PciI ACATGT 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 222, 413, 701
PflMI CCANNNNNTGG 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 742
PleI GAGTC 4 cut(s) 496, 544, 733, 817
PpsI GAGTC 4 cut(s) 496, 544, 733, 817
PscI ACATGT 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 3 cut(s) 13, 207, 514
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 474, 514
RsaNI GTAC 2 cut(s) 473, 513
SaqAI TTAA 7 cut(s) 36, 87, 147, 686, 749, 786, 840
Sau3AI GATC 3 cut(s) 205, 451, 846
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 4 cut(s) 497, 544, 733, 817
ScrFI CCNGG 1 cut(s) 744
SduI GDGCHC 2 cut(s) 282, 359
SfaNI GCATC 3 cut(s) 373, 514, 715
SmlI CTYRAG 2 cut(s) 86, 552
SmoI CTYRAG 2 cut(s) 86, 552
Sse9I AATT 6 cut(s) 163, 321, 423, 654, 675, 841
SsiI CCGC 1 cut(s) 401
SspMI CTAG 2 cut(s) 368, 626
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 454
TaqII GACCGA 1 cut(s) 276
TasI AATT 6 cut(s) 163, 321, 423, 654, 675, 841
TfiI GAWTC 3 cut(s) 222, 413, 701
Tru1I TTAA 7 cut(s) 36, 87, 147, 686, 749, 786, 840
Tru9I TTAA 7 cut(s) 36, 87, 147, 686, 749, 786, 840
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 3 cut(s) 261, 658, 713
Tsp45I GTSAC 3 cut(s) 261, 658, 713
TspDTI ATGAA 6 cut(s) 120, 252, 426, 594, 746, 771
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 86
VspI ATTAAT 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 1 cut(s) 675
XbaI TCTAGA 1 cut(s) 625
XceI RCATGY 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 368, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.