RchiOBHm_Chr4g0409291
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000329
Physical Location & Seq
Forward (+)
32608041 .. 32610572
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38033

Sequence Viewer

Length: 861 bp
ATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGACGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCGATCACAAAAAGATTCACTACTGATGATGAAGTATGGGCAGATTATTTGAAGTCACATCCAACGCATGGGCACTTTCGGTCAGAAACTTTTCCAGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAATCTAGGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGGATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAACTACTAACATGTTTGTACAAAGTGAAAATGAGTCATCACACCAAGAAAACTCACCATCTCTTTCACAACAACCCTCCCAAGGTACCACTATAGATGCTCCAGCTCCACCTCATAGCAGGACTCAAGGAAAACGGAGTAGAACTGACTATGAAAATAATAGTGGCTCAAAAGGGGCTACTGGTCAGGTTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTTTTGGATGCTATGAAGGAGACTCCAGGATTAACTGATGAAGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

286

Amino Acids

31.76

Weight (kDa)

5.37

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 4.7e-12 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 251 - 286 5.4e-15 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 539
AccB1I GGYRCC 2 cut(s) 11, 539
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 401
AciI CCGC 1 cut(s) 401
AclWI GGATC 3 cut(s) 200, 213, 421
AcsI RAATTY 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 474, 541
AfiI CCNNNNNNNGG 2 cut(s) 275, 536
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 8, 259, 319, 844
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 4 cut(s) 73, 175, 560, 788
AluI AGCT 4 cut(s) 73, 175, 560, 788
Alw26I GTCTC 2 cut(s) 59, 758
AlwI GGATC 3 cut(s) 200, 213, 421
ApoI RAATTY 1 cut(s) 702
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 539
AspLEI GCGC 2 cut(s) 14, 183
AsuHPI GGTGA 2 cut(s) 383, 501
BaeGI GKGCMC 1 cut(s) 282
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 11, 539
BanII GRGCYC 1 cut(s) 359
BccI CCATC 2 cut(s) 431, 520
BciT130I CCWGG 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 59, 758
BfaI CTAG 2 cut(s) 368, 653
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 15
BfrI CTTAAG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 771
BmiI GGNNCC 3 cut(s) 13, 207, 541
BmrFI CCNGG 1 cut(s) 771
BmsI GCATC 3 cut(s) 373, 541, 742
BpmI CTGGAG 2 cut(s) 540, 753
BpuEI CTTGAG 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 536
Bse1I ACTGG 2 cut(s) 352, 640
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 2 cut(s) 265, 757
BseLI CCNNNNNNNGG 2 cut(s) 275, 536
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 352, 640
BseSI GKGCMC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 11, 539
BslI CCNNNNNNNGG 2 cut(s) 275, 536
BsmAI GTCTC 2 cut(s) 59, 758
BsmBI CGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 282, 359
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 4 cut(s) 205, 210, 413, 451
BspACI CCGC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 13, 207, 541
BspPI GGATC 3 cut(s) 200, 213, 421
BspT107I GGYRCC 2 cut(s) 11, 539
BspTI CTTAAG 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 2 cut(s) 352, 640
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 4 cut(s) 205, 210, 413, 451
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 265, 757
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 183
BstKTI GATC 4 cut(s) 208, 213, 416, 454
BstMAI GTCTC 2 cut(s) 59, 758
BstMBI GATC 4 cut(s) 205, 210, 413, 451
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 769
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 205, 413
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 2 cut(s) 205, 413
BtsCI GGATG 2 cut(s) 265, 757
Cac8I GCNNGC 1 cut(s) 790
CfoI GCGC 2 cut(s) 14, 183
Csp6I GTAC 2 cut(s) 473, 540
CviAII CATG 2 cut(s) 275, 466
CviJI RGCY 9 cut(s) 73, 175, 357, 560, 621, 632, 711, 788, 800
CviKI_1 RGCY 9 cut(s) 73, 175, 357, 560, 621, 632, 711, 788, 800
CviQI GTAC 2 cut(s) 473, 540
DdeI CTNAG 1 cut(s) 171
DinI GGCGCC 1 cut(s) 13
DpnI GATC 4 cut(s) 207, 212, 415, 453
DpnII GATC 4 cut(s) 205, 210, 413, 451
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 359
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 278, 469
FatI CATG 2 cut(s) 274, 465
FokI GGATG 2 cut(s) 252, 764
FriOI GRGCYC 1 cut(s) 359
FspBI CTAG 2 cut(s) 368, 653
GlaI GCGC 2 cut(s) 13, 182
GsuI CTGGAG 2 cut(s) 540, 753
HaeII RGCGCY 1 cut(s) 15
HhaI GCGC 2 cut(s) 14, 183
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 278, 469
Hin6I GCGC 2 cut(s) 12, 181
HinP1I GCGC 2 cut(s) 12, 181
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 6 cut(s) 222, 488, 577, 728, 766, 850
HphI GGTGA 2 cut(s) 383, 501
Hpy188I TCNGA 2 cut(s) 210, 292
Hpy188III TCNNGA 8 cut(s) 29, 192, 302, 653, 732, 803, 841, 854
HpyAV CCTTC 1 cut(s) 754
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 326, 344, 386
HpyF3I CTNAG 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 278, 469
HspAI GCGC 2 cut(s) 12, 181
KasI GGCGCC 1 cut(s) 11
KpnI GGTACC 1 cut(s) 543
Kzo9I GATC 4 cut(s) 205, 210, 413, 451
LmnI GCTCC 3 cut(s) 398, 559, 565
LpnPI CCDG 9 cut(s) 177, 315, 333, 559, 570, 621, 626, 756, 783
LweI GCATC 3 cut(s) 373, 541, 742
MaeI CTAG 2 cut(s) 368, 653
MaeIII GTNAC 3 cut(s) 261, 685, 740
MalI GATC 4 cut(s) 207, 212, 415, 453
MbiI CCGCTC 1 cut(s) 401
MboI GATC 4 cut(s) 205, 210, 413, 451
MboII GAAGA 3 cut(s) 733, 829, 856
MflI RGATCY 2 cut(s) 205, 413
MhlI GDGCHC 2 cut(s) 282, 359
MluCI AATT 5 cut(s) 163, 321, 423, 681, 702
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 4 cut(s) 497, 571, 760, 844
MmeI TCCRAC 2 cut(s) 293, 310
MnlI CCTC 5 cut(s) 304, 397, 541, 576, 640
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 6 cut(s) 36, 87, 147, 713, 776, 813
MspCI CTTAAG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 771
MvaI CCWGG 1 cut(s) 771
NarI GGCGCC 1 cut(s) 12
NdeII GATC 4 cut(s) 205, 210, 413, 451
NlaIII CATG 2 cut(s) 278, 469
NlaIV GGNNCC 3 cut(s) 13, 207, 541
NmuCI GTSAC 3 cut(s) 261, 685, 740
NspI RCATGY 1 cut(s) 469
PciI ACATGT 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 222, 728
PflMI CCANNNNNTGG 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 769
PleI GAGTC 4 cut(s) 496, 571, 760, 844
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 4 cut(s) 496, 571, 760, 844
PscI ACATGT 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 3 cut(s) 13, 207, 541
PsuI RGATCY 2 cut(s) 205, 413
RsaI GTAC 2 cut(s) 474, 541
RsaNI GTAC 2 cut(s) 473, 540
SaqAI TTAA 6 cut(s) 36, 87, 147, 713, 776, 813
Sau3AI GATC 4 cut(s) 205, 210, 413, 451
SchI GAGTC 4 cut(s) 497, 571, 760, 844
ScrFI CCNGG 1 cut(s) 771
SduI GDGCHC 2 cut(s) 282, 359
SfaNI GCATC 3 cut(s) 373, 541, 742
SfcI CTRYAG 1 cut(s) 546
SfoI GGCGCC 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 86, 579
SmoI CTYRAG 2 cut(s) 86, 579
Sse9I AATT 5 cut(s) 163, 321, 423, 681, 702
SsiI CCGC 1 cut(s) 401
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 2 cut(s) 368, 653
StyD4I CCNGG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 454
TaqII GACCGA 1 cut(s) 276
TasI AATT 5 cut(s) 163, 321, 423, 681, 702
TatI WGTACW 1 cut(s) 472
TfiI GAWTC 2 cut(s) 222, 728
Tru1I TTAA 6 cut(s) 36, 87, 147, 713, 776, 813
Tru9I TTAA 6 cut(s) 36, 87, 147, 713, 776, 813
TseFI GTSAC 3 cut(s) 261, 685, 740
Tsp45I GTSAC 3 cut(s) 261, 685, 740
TspDTI ATGAA 5 cut(s) 120, 252, 621, 773, 798
TspGWI ACGGA 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 86
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 1 cut(s) 702
XbaI TCTAGA 1 cut(s) 652
XceI RCATGY 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 368, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.