RLG00000028902
MYB Family

At2g29880-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
30090457 .. 30091505
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028902

Sequence Viewer

Length: 951 bp
ATGGGTGATTCACAACAAGATGCCAAAAAAAGGGGGGGTTATGAGCAGTGGAGCAAGGAAGAGAGCAATTTATTATTAGAGCTCATGGTTGATGCTGCCACTCGGGGATGGCGTGACAATAGTGGTATCTTTTCCAAGCAAACAGTGGAAGAAAGAATACTTCCCGTTCTTAATTCAAAACTTGGGTGTCATAAGACCTACAACAATTACCAAAGCCGGTTGAAGTGGTTTAAAAATCGATGGGCTTCTTATTCAGCCCTAATGCGATTCAGCTCTGGTTTTGGGTTTGACTCAACTACAAAGAGGTTCACTGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCCAAACGATACCAATTTACGCTATGGGATATTTCATGATTATGAGGACTTGGAGATTGCTATTGGGAATGGTGTTGCTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCTACCGATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATACGCATAGAAGACTTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAATGATCGATCATTTCGCTCCACATCACCTCTAGGGTCACCTGAAATTTTAGAGGTTCCCAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACTGAGTATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGTCTATAGCCTATTGGCGAAGAGAGAAAGAGTATTGGAGAAAAGAGAAAGGGAGAGAGAATTTACAACTTGGGATGCTATCAAGGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGAGTTGCTTGACACCCAAACAAAAAAAGATGGTTTCCTGAAGATGTCTCCTGAAGAACGAGCAAACTGGATATTCCACAAGATGCGAGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

36.62

Weight (kDa)

5.66

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 113 7.2e-18 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 267 - 312 7.8e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 811
AcsI RAATTY 3 cut(s) 606, 708, 788
AcuI CTGAAG 3 cut(s) 300, 914, 927
AfiI CCNNNNNNNGG 4 cut(s) 30, 626, 683, 826
AgsI TTSAA 4 cut(s) 177, 223, 725, 847
AluBI AGCT 3 cut(s) 82, 273, 836
AluI AGCT 3 cut(s) 82, 273, 836
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 906
AlwI GGATC 1 cut(s) 811
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 3 cut(s) 606, 708, 788
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 853
AsuHPI GGTGA 4 cut(s) 17, 341, 579, 591
AvaI CYCGRG 1 cut(s) 102
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 102, 234, 878
BcoDI GTCTC 1 cut(s) 906
BfaI CTAG 1 cut(s) 593
BfmI CTRYAG 1 cut(s) 733
BfoI RGCGCY 1 cut(s) 854
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 618
BmsI GCATC 5 cut(s) 10, 82, 457, 793, 927
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 875
Bsa29I ATCGAT 2 cut(s) 238, 568
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 626, 683, 826
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 926
BseCI ATCGAT 2 cut(s) 238, 568
BseGI GGATG 2 cut(s) 113, 808
BseLI CCNNNNNNNGG 4 cut(s) 30, 626, 683, 826
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 1 cut(s) 926
BseXI GCAGC 1 cut(s) 82
BshVI ATCGAT 2 cut(s) 238, 568
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 4 cut(s) 30, 626, 683, 826
BsmAI GTCTC 1 cut(s) 906
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 565, 569, 816
BspCNI CTCAG 1 cut(s) 649
BspDI ATCGAT 2 cut(s) 238, 568
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 618
BspPI GGATC 1 cut(s) 811
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 1 cut(s) 926
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 3 cut(s) 565, 569, 816
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 54, 743
BstDEI CTNAG 1 cut(s) 657
BstEII GGTNACC 1 cut(s) 597
BstF5I GGATG 2 cut(s) 113, 808
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 568, 572, 819
BstMAI GTCTC 1 cut(s) 906
BstMBI GATC 3 cut(s) 565, 569, 816
BstMWI GCNNNNNNNGC 2 cut(s) 467, 859
BstPI GGTNACC 1 cut(s) 597
BstSFI CTRYAG 1 cut(s) 733
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
Bsu15I ATCGAT 2 cut(s) 238, 568
BsuTUI ATCGAT 2 cut(s) 238, 568
BtsCI GGATG 2 cut(s) 113, 808
BtsI GCAGTG 2 cut(s) 53, 309
BtsIMutI CAGTG 3 cut(s) 53, 150, 309
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 216
ClaI ATCGAT 2 cut(s) 238, 568
CviAII CATG 3 cut(s) 85, 386, 826
CviJI RGCY 8 cut(s) 82, 216, 245, 257, 273, 347, 738, 836
CviKI_1 RGCY 8 cut(s) 82, 216, 245, 257, 273, 347, 738, 836
DdeI CTNAG 1 cut(s) 657
DpnI GATC 3 cut(s) 567, 571, 818
DpnII GATC 3 cut(s) 565, 569, 816
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 54, 743
EarI CTCTTC 2 cut(s) 54, 743
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 3 cut(s) 300, 914, 927
Eco88I CYCGRG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 597
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 3 cut(s) 88, 389, 829
FatI CATG 3 cut(s) 84, 385, 825
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 120, 815
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 852
GluI GCNGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 854
HapII CCGG 1 cut(s) 217
HhaI GCGC 1 cut(s) 853
Hin1II CATG 3 cut(s) 88, 389, 829
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HinfI GANTC 4 cut(s) 8, 267, 290, 729
HpaII CCGG 1 cut(s) 217
HphI GGTGA 4 cut(s) 17, 341, 579, 591
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 319, 561
Hpy188III TCNNGA 3 cut(s) 386, 892, 905
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 1 cut(s) 719
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 859
HpyF3I CTNAG 1 cut(s) 657
Hsp92II CATG 3 cut(s) 88, 389, 829
HspAI GCGC 1 cut(s) 851
Kzo9I GATC 3 cut(s) 565, 569, 816
LmnI GCTCC 2 cut(s) 51, 584
LpnPI CCDG 6 cut(s) 230, 261, 615, 905, 907, 918
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 5 cut(s) 10, 82, 457, 793, 927
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 2 cut(s) 113, 597
MalI GATC 3 cut(s) 567, 571, 818
MboI GATC 3 cut(s) 565, 569, 816
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 7 cut(s) 67, 172, 205, 364, 606, 708, 788
MlyI GAGTC 2 cut(s) 284, 738
MmeI TCCRAC 2 cut(s) 412, 466
MnlI CCTC 5 cut(s) 297, 388, 600, 607, 687
MroXI GAANNNNTTC 1 cut(s) 837
MseI TTAA 3 cut(s) 171, 231, 702
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 467, 859
NdeII GATC 3 cut(s) 565, 569, 816
NlaIII CATG 3 cut(s) 88, 389, 829
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 2 cut(s) 113, 597
PagI TCATGA 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 2 cut(s) 8, 267
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 284, 737
PpsI GAGTC 2 cut(s) 284, 737
Psp124BI GAGCTC 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 816
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 171, 231, 702
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 565, 569, 816
SchI GAGTC 2 cut(s) 284, 738
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 5 cut(s) 10, 82, 457, 793, 927
SfcI CTRYAG 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 7 cut(s) 67, 172, 205, 364, 606, 708, 788
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 84
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 238, 519, 568, 713
TasI AATT 7 cut(s) 67, 172, 205, 364, 606, 708, 788
TfiI GAWTC 2 cut(s) 8, 267
Tru1I TTAA 3 cut(s) 171, 231, 702
Tru9I TTAA 3 cut(s) 171, 231, 702
TscAI CASTG 3 cut(s) 53, 150, 316
TseFI GTSAC 2 cut(s) 113, 597
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 2 cut(s) 113, 597
TspDTI ATGAA 3 cut(s) 336, 374, 678
TspRI CASTG 3 cut(s) 53, 150, 316
XapI RAATTY 3 cut(s) 606, 708, 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.