Rmu_sc0007848.1_g000030
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007848.1
OG0000329
Physical Location & Seq
Reverse (-)
112095 .. 112835
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007848.1_g000030.1.cds

Sequence Viewer

Length: 465 bp
atgaagagaatcaccgctagtgatgaagtatgggaagtgggaaacggaactgcaacaggaaagttttcaagtagtctgggcaatgaaactgatgcaaccacatacatggttgaggaaagtgaaagtggtgctttgaatgacttggtccataacaaaaatgctgatgcattcataccagcaggggatgaatcatcattccaaggttatccaccacagccatcatccttatcttttgagggcacaaatgtgggagaaaagcattggttctattgctctattgccaccaatttcaacaaaatgtatagcctcatggagaaaagagaatcatgggatacagattgctgggatgctattaaggacactccaggcctgaatgatgaagcacgttacttggctcttgagttgctcaatactaaagcattgaaggatgtttttctgaaaatgaccccggaggagcaattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

154

Amino Acids

17.21

Weight (kDa)

4.43

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AgsI TTSAA 4 cut(s) 69, 136, 292, 424
AjnI CCWGG 1 cut(s) 364
AleI CACNNNNGTG 1 cut(s) 245
AoxI GGCC 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 242
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 325
BcnI CCSGG 1 cut(s) 449
BfaI CTAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 366, 449
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 366, 449
BmsI GCATC 3 cut(s) 82, 154, 337
BpmI CTGGAG 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 199, 447
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 199, 447
BseGI GGATG 4 cut(s) 190, 221, 352, 433
BseMI GCAATG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 342
BshFI GGCC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 449
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 242
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 199, 447
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 190, 221, 352, 433
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 364, 447
BstSLI GKGCMC 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 106
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 4 cut(s) 190, 221, 352, 433
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 3 cut(s) 106, 310, 327
CviJI RGCY 4 cut(s) 217, 306, 369, 395
CviKI_1 RGCY 4 cut(s) 217, 306, 369, 395
Eco130I CCWWGG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 3 cut(s) 109, 313, 330
FaiI YATR 8 cut(s) 31, 103, 107, 150, 173, 303, 311, 328
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 3 cut(s) 105, 309, 326
FokI GGATG 4 cut(s) 197, 208, 359, 440
FspBI CTAG 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 369
HapII CCGG 1 cut(s) 449
Hin1II CATG 3 cut(s) 109, 313, 330
HinfI GANTC 3 cut(s) 9, 188, 323
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 53, 95, 167
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 3 cut(s) 109, 313, 330
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 8 cut(s) 42, 62, 165, 189, 328, 351, 378, 383
LweI GCATC 3 cut(s) 82, 154, 337
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 386
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 286, 458
MnlI CCTC 4 cut(s) 106, 229, 317, 445
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 2 cut(s) 354, 463
MslI CAYNNNNRTG 2 cut(s) 104, 245
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 366, 449
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 366
NciI CCSGG 1 cut(s) 449
NlaIII CATG 3 cut(s) 109, 313, 330
NsiI ATGCAT 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 245
PceI AGGCCT 1 cut(s) 369
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 9, 188, 323
PflFI GACNNNGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 104, 245
SaqAI TTAA 2 cut(s) 354, 463
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 366, 449
SduI GDGCHC 1 cut(s) 242
SetI ASST 2 cut(s) 205, 388
SfaNI GCATC 3 cut(s) 82, 154, 337
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 2 cut(s) 104, 245
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 286, 458
SseBI AGGCCT 1 cut(s) 369
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 18
StuI AGGCCT 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 364, 447
StyI CCWWGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 388
TasI AATT 2 cut(s) 286, 458
TfiI GAWTC 3 cut(s) 9, 188, 323
Tru1I TTAA 2 cut(s) 354, 463
Tru9I TTAA 2 cut(s) 354, 463
TspDTI ATGAA 6 cut(s) 17, 39, 99, 160, 201, 393
TspGWI ACGGA 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.