Rroxscaffold_6G00393340
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000329
Physical Location & Seq
Forward (+)
13393530 .. 13394119
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393340.1

Sequence Viewer

Length: 471 bp
ATGGTAAAAAAAAAAGATTACAAAACTTGGAATGCTGAAGAGAGCAATGTTTTGCTTCAACTTATGGTTGAAGGAGCCAAACTTGGATTGCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTGAAGGAAAAACTTGGTTATGAAATAAGTTTTAGTCATTACCAAAGTAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGCGTCATAGTTCTGGATTTGGGTGGGATCCTATCACAAAGAGATTCACTGCGATGATGAATCACGAAGATAATTTTGAATGGGATGATTTTCAAACCCAAGATCAGCAAAGAGAGAATGCTAATGAATGGAGAATGAGTATTGCTACTCATATGTGGACAGATGCCCAACCAAATGCCAACAATGAAAACAATGACAATCAAGAAAGTGAAAATGAAGGAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

156

Amino Acids

18.49

Weight (kDa)

5.45

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 9 - 99 1.9e-12 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 263, 276
AcuI CTGAAG 2 cut(s) 57, 170
AgsI TTSAA 4 cut(s) 59, 71, 320, 335
AluBI AGCT 2 cut(s) 136, 238
AluI AGCT 2 cut(s) 136, 238
AlwI GGATC 2 cut(s) 263, 276
AseI ATTAAT 1 cut(s) 99
BamHI GGATCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 76, 270
BmsI GCATC 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse3DI GCAATG 1 cut(s) 52
BseGI GGATG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 248
BsmI GAATGC 2 cut(s) 37, 364
Bsp143I GATC 2 cut(s) 268, 343
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 76, 270
BspPI GGATC 2 cut(s) 263, 276
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 2 cut(s) 268, 343
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 271, 346
BstMBI GATC 2 cut(s) 268, 343
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 288
CseI GACGC 1 cut(s) 233
CviJI RGCY 3 cut(s) 77, 136, 238
CviKI_1 RGCY 3 cut(s) 77, 136, 238
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 270, 345
DpnII GATC 2 cut(s) 268, 343
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 57, 170
FaiI YATR 6 cut(s) 65, 168, 242, 249, 393, 395
FauNDI CATATG 1 cut(s) 393
FokI GGATG 1 cut(s) 338
HgaI GACGC 1 cut(s) 233
HinfI GANTC 2 cut(s) 285, 301
Hpy166II GTNNAC 1 cut(s) 399
Hpy188III TCNNGA 3 cut(s) 255, 305, 443
Hpy8I GTNNAC 1 cut(s) 399
HpyAV CCTTC 3 cut(s) 65, 145, 452
HpyCH4III ACNGT 1 cut(s) 124
HpyF3I CTNAG 1 cut(s) 234
Kzo9I GATC 2 cut(s) 268, 343
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 1 cut(s) 240
LweI GCATC 1 cut(s) 394
MalI GATC 2 cut(s) 270, 345
MboI GATC 2 cut(s) 268, 343
MboII GAAGA 2 cut(s) 50, 320
MflI RGATCY 1 cut(s) 268
MluCI AATT 2 cut(s) 226, 313
MnlI CCTC 1 cut(s) 121
MseI TTAA 2 cut(s) 99, 210
MslI CAYNNNNRTG 1 cut(s) 293
Mva1269I GAATGC 2 cut(s) 37, 364
NdeI CATATG 1 cut(s) 393
NdeII GATC 2 cut(s) 268, 343
NlaIV GGNNCC 2 cut(s) 76, 270
PctI GAATGC 2 cut(s) 37, 364
PfeI GAWTC 2 cut(s) 285, 301
PshBI ATTAAT 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 76, 270
PsuI RGATCY 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 99, 210
Sau3AI GATC 2 cut(s) 268, 343
SetI ASST 2 cut(s) 138, 240
SfaNI GCATC 1 cut(s) 394
SgeI CNNG 8 cut(s) 39, 95, 104, 173, 267, 317, 353, 455
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 2 cut(s) 226, 313
TaaI ACNGT 1 cut(s) 124
TasI AATT 2 cut(s) 226, 313
TfiI GAWTC 2 cut(s) 285, 301
Tru1I TTAA 2 cut(s) 99, 210
Tru9I TTAA 2 cut(s) 99, 210
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 5 cut(s) 183, 314, 381, 441, 471
TspRI CASTG 1 cut(s) 295
VspI ATTAAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.