RLG00000013450
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000329
Physical Location & Seq
Forward (+)
31634338 .. 31634953
616 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013450

Sequence Viewer

Length: 516 bp
ATGCGTTTTAGATCTGGTTTTGGATTTGATTCAACTACAAAGAGATTTACCGCTTCTAATGAAGTATGGGAGGAATACCTTAAGGCTCACCCAAAGGACACCGACTTGCGCTATGGGAAATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTACTGATGCAAGAACATTAGGTGTTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATTCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAATTTTGGAGGTTCCGAGGCGAGTAACAACCCAAAATAAAAGAAGTAGAACTGAGTATGAAGAAAATTCTAACTCAATTGGGGGCACCCCTCAAAGTGGTGTTATGGAGAAGCTTGATAAACTTTACTCTGGTTTTGAAGTAATGATTAACTTACTAGAGAAAAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

172

Amino Acids

19.11

Weight (kDa)

4.78

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AciI CCGC 2 cut(s) 51, 167
AcsI RAATTY 3 cut(s) 119, 345, 409
AfiI CCNNNNNNNGG 1 cut(s) 440
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 33, 482
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 270, 302
AluBI AGCT 1 cut(s) 457
AluI AGCT 1 cut(s) 457
ApoI RAATTY 3 cut(s) 119, 345, 409
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 80, 239, 318
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 431
BanI GGYRCC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 258
BfaI CTAG 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 80
BglII AGATCT 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 357, 430
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 2 cut(s) 51, 167
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 357, 430
BspT107I GGYRCC 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMCI CGRYCG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 290
CviAII CATG 1 cut(s) 243
CviJI RGCY 2 cut(s) 86, 457
CviKI_1 RGCY 2 cut(s) 86, 457
DdeI CTNAG 1 cut(s) 396
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 248
FaeI CATG 1 cut(s) 246
FaiI YATR 9 cut(s) 67, 114, 132, 244, 248, 264, 269, 402, 449
FatI CATG 1 cut(s) 242
FokI GGATG 1 cut(s) 303
FspBI CTAG 1 cut(s) 500
GlaI GCGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 246
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 1 cut(s) 29
HphI GGTGA 3 cut(s) 80, 239, 318
Hpy188I TCNGA 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 209, 246
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 1 cut(s) 246
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 11
LpnPI CCDG 2 cut(s) 354, 459
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 500
MaeIII GTNAC 2 cut(s) 199, 367
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 2 cut(s) 263, 416
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 6 cut(s) 119, 144, 304, 345, 409, 420
MmeI TCCRAC 2 cut(s) 268, 344
MnlI CCTC 7 cut(s) 64, 127, 232, 341, 346, 354, 444
Mph1103I ATGCAT 1 cut(s) 248
MseI TTAA 2 cut(s) 81, 492
MspCI CTTAAG 1 cut(s) 80
MunI CAATTG 1 cut(s) 420
NdeII GATC 1 cut(s) 11
NlaIII CATG 1 cut(s) 246
NlaIV GGNNCC 2 cut(s) 357, 430
NsiI ATGCAT 1 cut(s) 248
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 357, 430
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 11
SaqAI TTAA 2 cut(s) 81, 492
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 431
SetI ASST 5 cut(s) 81, 223, 235, 357, 459
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 246
Sse9I AATT 6 cut(s) 119, 144, 304, 345, 409, 420
SsiI CCGC 2 cut(s) 51, 167
SspMI CTAG 1 cut(s) 500
TaqII GACCGA 1 cut(s) 172
TasI AATT 6 cut(s) 119, 144, 304, 345, 409, 420
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 81, 492
Tru9I TTAA 2 cut(s) 81, 492
TspDTI ATGAA 3 cut(s) 75, 297, 417
Vha464I CTTAAG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 3 cut(s) 119, 345, 409
XceI RCATGY 1 cut(s) 246
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.