Rroxscaffold_1G00031270
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000329
Physical Location & Seq
Reverse (-)
43974479 .. 43977175
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031270.1

Sequence Viewer

Length: 1014 bp
ATGGTTGAAGGCGCCAAACTTGGATTTCGTGATGTTAATGGTGTGATAAGCAAACAAACAGTAGAGACGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCAGCTTATGCGCCATAGTTCTGGATTTGGGTGGGATCCGATCACAAAAAGATTCACCGCTGATGATGAAGTATGGGCAGATTATTTGAAGGTGAGCTTATTGCCTTTTCTCACATCCAACTCATGGGCACTTTCGGTCGAAACTTTTCCGGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCGGTCTAGGTGATGATACGGATGCAACAACATTTGGAGCGGAGGAAAATGGATCTTGGGGAATTGGTGGCAGAGATGGATTAGTTTTTGATCGAACTACTAACATGTTTGTACAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCGGTATAGATGCTCCAGCTCCACCTCATAGCAGGACTCAAGGAAAACGGAGTAGAACCGACTATGAAAATAATAGTGGCTCAAAAGGGGCTACCGGTCAGGTGCTTTCTCTATTAGCAATGTCTGAAATGGACATGTATGGAGTTGATGAAGAGGAAGAACAGTTTTACGAGGCTGTTAAGATATTATTAATGGCAATACAAGCAGTGGTTTATGTGTTATACGACCTTGTATTCAGCATACGTGATGAATTTCCTCCCGAACCAGAAGAAGATCCGATAGACAATCACGAAGATAATTTTGAATGGGATGATTTTCAAACCCAAGATCAGCAGAGAGAAAATGCTAATGAATGGAGAATGAGTATTGCTACTCATATGTGGACAGATGCCCAACCAAATGCCAACAATGAAAATAATAACAATGAAGAAAGTGAAAATGAAGGAGAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

337

Amino Acids

37.94

Weight (kDa)

4.4

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 7.8e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 2 cut(s) 11, 557
AccB7I CCANNNNNTGG 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 419
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 2 cut(s) 228, 419
AclWI GGATC 4 cut(s) 200, 213, 439, 827
AcsI RAATTY 1 cut(s) 809
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 492, 559
AfiI CCNNNNNNNGG 2 cut(s) 294, 554
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 2 cut(s) 483, 693
AgeI ACCGGT 2 cut(s) 560, 653
AgsI TTSAA 5 cut(s) 8, 259, 337, 863, 878
AluBI AGCT 4 cut(s) 73, 175, 267, 578
AluI AGCT 4 cut(s) 73, 175, 267, 578
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 4 cut(s) 200, 213, 439, 827
Aor13HI TCCGGA 1 cut(s) 319
ApoI RAATTY 1 cut(s) 809
AseI ATTAAT 1 cut(s) 749
AsiGI ACCGGT 2 cut(s) 560, 653
Asp700I GAANNNNTTC 1 cut(s) 315
Asp718I GGTACC 1 cut(s) 557
AspLEI GCGC 2 cut(s) 14, 183
AsuHPI GGTGA 3 cut(s) 217, 274, 401
BaeGI GKGCMC 1 cut(s) 301
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 11, 557
BanII GRGCYC 1 cut(s) 377
BccI CCATC 2 cut(s) 449, 538
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 15
BfrI CTTAAG 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 13, 207, 559
BmsI GCATC 3 cut(s) 391, 559, 937
BpmI CTGGAG 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 553
BsaWI WCCGGW 3 cut(s) 319, 560, 653
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 554
Bse118I RCCGGY 2 cut(s) 560, 653
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 684
BseAI TCCGGA 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 3 cut(s) 284, 406, 874
BseLI CCNNNNNNNGG 2 cut(s) 294, 554
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 309
BshNI GGYRCC 2 cut(s) 11, 557
BshTI ACCGGT 2 cut(s) 560, 653
BsiEI CGRYCG 1 cut(s) 309
BsiSI CCGG 3 cut(s) 320, 561, 654
BslI CCNNNNNNNGG 2 cut(s) 294, 554
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 301, 377
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 6 cut(s) 205, 210, 431, 469, 832, 886
BspACI CCGC 2 cut(s) 228, 419
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 13, 207, 559
BspPI GGATC 4 cut(s) 200, 213, 439, 827
BspT107I GGYRCC 2 cut(s) 11, 557
BspTI CTTAAG 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 684
BsrFI RCCGGY 2 cut(s) 560, 653
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 2 cut(s) 560, 653
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 6 cut(s) 205, 210, 431, 469, 832, 886
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 553
Bst4CI ACNGT 2 cut(s) 61, 723
Bst6I CTCTTC 1 cut(s) 705
BstACI GRCGYC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 803
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 3 cut(s) 284, 406, 874
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 183
BstKTI GATC 6 cut(s) 208, 213, 434, 472, 835, 889
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 6 cut(s) 205, 210, 431, 469, 832, 886
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNSI RCATGY 2 cut(s) 487, 697
BstSLI GKGCMC 1 cut(s) 301
BstX2I RGATCY 3 cut(s) 205, 431, 832
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 3 cut(s) 205, 431, 832
BtsCI GGATG 3 cut(s) 284, 406, 874
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 1 cut(s) 771
CfoI GCGC 2 cut(s) 14, 183
Cfr10I RCCGGY 2 cut(s) 560, 653
Csp6I GTAC 2 cut(s) 491, 558
CspAI ACCGGT 2 cut(s) 560, 653
CviAII CATG 3 cut(s) 294, 484, 694
CviJI RGCY 8 cut(s) 73, 175, 267, 375, 578, 639, 650, 734
CviKI_1 RGCY 8 cut(s) 73, 175, 267, 375, 578, 639, 650, 734
CviQI GTAC 2 cut(s) 491, 558
DdeI CTNAG 1 cut(s) 171
DinI GGCGCC 1 cut(s) 13
DpnI GATC 6 cut(s) 207, 212, 433, 471, 834, 888
DpnII GATC 6 cut(s) 205, 210, 431, 469, 832, 886
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 377
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 553
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 3 cut(s) 297, 487, 697
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 3 cut(s) 293, 483, 693
FauNDI CATATG 1 cut(s) 936
FokI GGATG 3 cut(s) 271, 413, 881
FriOI GRGCYC 1 cut(s) 377
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 13, 182
GsuI CTGGAG 1 cut(s) 558
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 3 cut(s) 320, 561, 654
HhaI GCGC 2 cut(s) 14, 183
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 3 cut(s) 297, 487, 697
Hin6I GCGC 2 cut(s) 12, 181
HinP1I GCGC 2 cut(s) 12, 181
HinfI GANTC 3 cut(s) 222, 506, 595
HpaII CCGG 3 cut(s) 320, 561, 654
HphI GGTGA 3 cut(s) 217, 274, 401
Hpy166II GTNNAC 1 cut(s) 942
Hpy188I TCNGA 3 cut(s) 210, 685, 837
Hpy188III TCNNGA 5 cut(s) 29, 192, 320, 818, 848
Hpy8I GTNNAC 1 cut(s) 942
HpyAV CCTTC 3 cut(s) 253, 995, 1001
HpyCH4III ACNGT 2 cut(s) 61, 723
HpyCH4IV ACGT 1 cut(s) 802
HpyCH4V TGCA 3 cut(s) 344, 362, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 802
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 3 cut(s) 297, 487, 697
HspAI GCGC 2 cut(s) 12, 181
KasI GGCGCC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 319
KpnI GGTACC 1 cut(s) 561
Kzo9I GATC 6 cut(s) 205, 210, 431, 469, 832, 886
LmnI GCTCC 3 cut(s) 416, 577, 583
LpnPI CCDG 9 cut(s) 177, 333, 351, 574, 577, 588, 644, 667, 837
LweI GCATC 3 cut(s) 391, 559, 937
MaeI CTAG 1 cut(s) 386
MaeII ACGT 1 cut(s) 802
MalI GATC 6 cut(s) 207, 212, 433, 471, 834, 888
MbiI CCGCTC 1 cut(s) 419
MboI GATC 6 cut(s) 205, 210, 431, 469, 832, 886
MboII GAAGA 6 cut(s) 722, 728, 839, 842, 863, 998
MflI RGATCY 3 cut(s) 205, 431, 832
MhlI GDGCHC 2 cut(s) 301, 377
MluCI AATT 5 cut(s) 163, 339, 441, 809, 856
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 515, 589
MmeI TCCRAC 2 cut(s) 312, 328
MnlI CCTC 7 cut(s) 322, 415, 559, 594, 706, 724, 825
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 5 cut(s) 36, 87, 147, 738, 749
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 3 cut(s) 320, 561, 654
MwoI GCNNNNNNNGC 1 cut(s) 761
NarI GGCGCC 1 cut(s) 12
NdeI CATATG 1 cut(s) 936
NdeII GATC 6 cut(s) 205, 210, 431, 469, 832, 886
NlaIII CATG 3 cut(s) 297, 487, 697
NlaIV GGNNCC 3 cut(s) 13, 207, 559
NspI RCATGY 2 cut(s) 487, 697
PciI ACATGT 2 cut(s) 483, 693
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 294
PinAI ACCGGT 2 cut(s) 560, 653
PleI GAGTC 2 cut(s) 514, 589
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 514, 589
Ppu21I YACGTR 1 cut(s) 803
PscI ACATGT 2 cut(s) 483, 693
PshBI ATTAAT 1 cut(s) 749
PspN4I GGNNCC 3 cut(s) 13, 207, 559
PsuI RGATCY 3 cut(s) 205, 431, 832
RsaI GTAC 2 cut(s) 492, 559
RsaNI GTAC 2 cut(s) 491, 558
SaqAI TTAA 5 cut(s) 36, 87, 147, 738, 749
Sau3AI GATC 6 cut(s) 205, 210, 431, 469, 832, 886
SchI GAGTC 2 cut(s) 515, 589
SduI GDGCHC 2 cut(s) 301, 377
SfaNI GCATC 3 cut(s) 391, 559, 937
SfoI GGCGCC 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 86, 597
SmoI CTYRAG 2 cut(s) 86, 597
Sse9I AATT 5 cut(s) 163, 339, 441, 809, 856
SsiI CCGC 2 cut(s) 228, 419
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 61, 723
TaiI ACGT 1 cut(s) 805
TaqI TCGA 2 cut(s) 309, 472
TaqII GACCGA 2 cut(s) 295, 371
TasI AATT 5 cut(s) 163, 339, 441, 809, 856
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 5 cut(s) 36, 87, 147, 738, 749
Tru9I TTAA 5 cut(s) 36, 87, 147, 738, 749
TscAI CASTG 1 cut(s) 771
TspDTI ATGAA 9 cut(s) 120, 252, 639, 723, 822, 924, 984, 999, 1014
TspGWI ACGGA 2 cut(s) 413, 622
TspRI CASTG 1 cut(s) 771
Van91I CCANNNNNTGG 1 cut(s) 294
Vha464I CTTAAG 1 cut(s) 86
VspI ATTAAT 1 cut(s) 749
XapI RAATTY 1 cut(s) 809
XceI RCATGY 2 cut(s) 487, 697
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.