Rroxscaffold_2G00131670
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000329
Physical Location & Seq
Forward (+)
68429074 .. 68432640
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131670.1

Sequence Viewer

Length: 351 bp
ATGGTTGATCCACAACAAGATGTAAAAAAAAAAGGGAATTATGAGCAGTGGACCAAGGAAGAGAGTGCTACCTTGTTAGAACTCATAGTTGATGTCGCCGTTAGGGGATGGGGTGACAATAGTGGCATCTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTATTCTTAATGCAAAACTTGGGTGTCAACATAGACAGCGAAATGATGATAATGGAAGTCAAGAGAATAACAATGATACTCAAGGCAATGAGAATGAGAATATGAGGAGCATATGGATGATGGGGATCAATATGATGATAATGAGATTGGAATGGATAAGTACACAGCTTTCTAATGTACATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

116

Amino Acids

13.4

Weight (kDa)

4.96

Isoelectric Point (pI)

25.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 2, 296
AfaI GTAC 2 cut(s) 325, 342
AflII CTTAAG 1 cut(s) 130
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
AlwI GGATC 2 cut(s) 2, 296
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BccI CCATC 2 cut(s) 102, 277
BceAI ACGGC 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 113, 285
BseJI GATNNNNATC 1 cut(s) 287
BseMI GCAATG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 7, 288
BspPI GGATC 2 cut(s) 2, 296
BspTI CTTAAG 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 7, 288
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 340
BstF5I GGATG 2 cut(s) 113, 285
BstKTI GATC 2 cut(s) 10, 291
BstMBI GATC 2 cut(s) 7, 288
BtsCI GGATG 2 cut(s) 113, 285
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 53, 150
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 324, 341
CviJI RGCY 1 cut(s) 331
CviKI_1 RGCY 1 cut(s) 331
CviQI GTAC 2 cut(s) 324, 341
DpnI GATC 2 cut(s) 9, 290
DpnII GATC 2 cut(s) 7, 288
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaiI YATR 7 cut(s) 42, 86, 195, 266, 275, 277, 296
FauNDI CATATG 1 cut(s) 275
FokI GGATG 2 cut(s) 120, 292
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 51, 191, 326
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 3 cut(s) 51, 191, 326
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 176
Kzo9I GATC 2 cut(s) 7, 288
LmnI GCTCC 1 cut(s) 270
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 9, 290
MboI GATC 2 cut(s) 7, 288
MboII GAAGA 2 cut(s) 71, 161
MluCI AATT 1 cut(s) 37
MnlI CCTC 1 cut(s) 261
MseI TTAA 3 cut(s) 131, 171, 349
MslI CAYNNNNRTG 1 cut(s) 278
MspCI CTTAAG 1 cut(s) 130
NdeI CATATG 1 cut(s) 275
NdeII GATC 2 cut(s) 7, 288
NmuCI GTSAC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 2 cut(s) 325, 342
RsaNI GTAC 2 cut(s) 324, 341
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 3 cut(s) 131, 171, 349
Sau3AI GATC 2 cut(s) 7, 288
Sau96I GGNCC 1 cut(s) 51
SetI ASST 2 cut(s) 74, 333
SfaNI GCATC 1 cut(s) 135
SgeI CNNG 6 cut(s) 29, 67, 85, 194, 236, 257
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 130, 243
SmoI CTYRAG 2 cut(s) 130, 243
Sse9I AATT 1 cut(s) 37
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 145
TasI AATT 1 cut(s) 37
TatI WGTACW 2 cut(s) 323, 340
Tru1I TTAA 3 cut(s) 131, 171, 349
Tru9I TTAA 3 cut(s) 131, 171, 349
TscAI CASTG 2 cut(s) 53, 150
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspRI CASTG 2 cut(s) 53, 150
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.