Rroxscaffold_5G00340520
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000329
Physical Location & Seq
Forward (+)
8963577 .. 8964059
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340520.1

Sequence Viewer

Length: 483 bp
ATGGGCACTTTCGGTCGAAACTTTTCCGACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATACAGATGCCACAACATTTGGAGCGGAAGAAAACGGACCTTGGGGAATTGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTGCAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAATGTAGATGCTCCACCACATAGCAAGACTCAAGGAAAACGGAGTAGGGCTGACTATGAAAATAATAGCGCCTCAAAGGGGGCAACTAGTCAGGTTGAGGTTTTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGATCTTTTGGATGCTATGAAGGAGACCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

160

Amino Acids

17.16

Weight (kDa)

4.52

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 125
AciI CCGC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 251, 336
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 43
AhlI ACTAGT 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 22
Asp718I GGTACC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 83
BccI CCATC 2 cut(s) 146, 235
BcoDI GTCTC 1 cut(s) 467
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 2 cut(s) 92, 345
BfoI RGCGCY 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 3 cut(s) 97, 256, 451
BpuEI CTTGAG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 140, 250
BsaXI ACNNNNNCTCC 1 cut(s) 464
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 336
Bse1I ACTGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 140, 250
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 251, 336
BseNI ACTGG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 254
BsiEI CGRYCG 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 251, 336
BsmAI GTCTC 1 cut(s) 467
Bso31I GGTCTC 1 cut(s) 467
Bsp1286I GDGCHC 2 cut(s) 8, 83
Bsp143I GATC 2 cut(s) 166, 451
BspACI CCGC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 140, 250
BssMI GATC 2 cut(s) 166, 451
BssT1I CCWWGG 2 cut(s) 140, 250
Bst6I CTCTTC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 466
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 2 cut(s) 169, 454
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 2 cut(s) 166, 451
BstMCI CGRYCG 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 466
CfoI GCGC 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 255
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 1 cut(s) 181
CviJI RGCY 3 cut(s) 81, 308, 420
CviKI_1 RGCY 3 cut(s) 81, 308, 420
CviQI GTAC 1 cut(s) 255
DpnI GATC 2 cut(s) 168, 453
DpnII GATC 2 cut(s) 166, 451
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco130I CCWWGG 2 cut(s) 140, 250
Eco24I GRGCYC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 140, 250
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 2 cut(s) 140, 250
FaeI CATG 1 cut(s) 184
FaiI YATR 5 cut(s) 33, 182, 279, 315, 467
FatI CATG 1 cut(s) 180
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 83
FspBI CTAG 2 cut(s) 92, 345
GlaI GCGC 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 330
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 3 cut(s) 203, 286, 437
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 441
HpyAV CCTTC 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 50, 68, 190
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 327
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 166, 451
LmnI GCTCC 2 cut(s) 122, 274
LpnPI CCDG 2 cut(s) 57, 335
LweI GCATC 3 cut(s) 97, 256, 451
MaeI CTAG 2 cut(s) 92, 345
MaeIII GTNAC 1 cut(s) 394
MalI GATC 2 cut(s) 168, 453
MbiI CCGCTC 1 cut(s) 125
MboI GATC 2 cut(s) 166, 451
MboII GAAGA 2 cut(s) 140, 442
MhlI GDGCHC 2 cut(s) 8, 83
MluCI AATT 4 cut(s) 45, 147, 390, 411
MlyI GAGTC 2 cut(s) 212, 280
MmeI TCCRAC 2 cut(s) 34, 51
MnlI CCTC 4 cut(s) 28, 256, 340, 349
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 1 cut(s) 185
NdeII GATC 2 cut(s) 166, 451
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 184
PciI ACATGT 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 437
PleI GAGTC 2 cut(s) 211, 280
PpsI GAGTC 2 cut(s) 211, 280
PscI ACATGT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 137
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 422
Sau3AI GATC 2 cut(s) 166, 451
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 2 cut(s) 212, 280
SduI GDGCHC 2 cut(s) 8, 83
SetI ASST 5 cut(s) 97, 142, 256, 354, 360
SfaNI GCATC 3 cut(s) 97, 256, 451
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 4 cut(s) 45, 147, 390, 411
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 92, 345
StyI CCWWGG 2 cut(s) 140, 250
TaqI TCGA 2 cut(s) 16, 169
TasI AATT 4 cut(s) 45, 147, 390, 411
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 330, 482
TspGWI ACGGA 2 cut(s) 150, 313
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 1 cut(s) 411
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 2 cut(s) 92, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.