RLG00000034626
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000329
Physical Location & Seq
Reverse (-)
46584176 .. 46585236
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034626

Sequence Viewer

Length: 735 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAAGATTACAAAACTTGGAATGCTGAAGAGAGCAATGTTTTGCTTCAACTTATGGTTGAAGGAGCCAAACTTGGATTACGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGTTACTTCCTAAACTGAAGGAAAAACTTGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTAGGTGATGATATAGATGCCACAACATTTGGAGCGGAAGAAAACGGACCTTGGGGAATTGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTGCAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCGTCCCAAGTTACCAATGTAGATGCTCCACCACATAGCAAAACTCAAGGAAAACGGAGTAGGGCTGACTATGAAAATAATAGCGGCTCAAAGGGGGCAACTAGTCAGGCTGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCCTAATGGAGAAGAAAGAATCAAGAGAGTGTAATCTTTTGGATGCTATGAAGGAGACCCCAGGATTAACTGATGAGGCTTGCTTTATGGCTCTTGATTTGCTTAATACTAAAGCAAAGCAAGATTTCTTCTTGAAGATGACTCCTGAACAACGACATAATTGGATCACCTATAAACAAATGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

245

Amino Acids

26.77

Weight (kDa)

5.25

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 197 - 241 6e-21 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 254
AciI CCGC 2 cut(s) 254, 456
AclWI GGATC 1 cut(s) 719
AcsI RAATTY 1 cut(s) 540
AcuI CTGAAG 2 cut(s) 75, 188
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 77, 89, 682
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 607
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 1 cut(s) 719
AoxI GGCC 1 cut(s) 547
ApoI RAATTY 1 cut(s) 540
AseI ATTAAT 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 236, 706
AvaII GGWCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 483
BccI CCATC 2 cut(s) 275, 364
BciT130I CCWGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 596
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 3 cut(s) 221, 474, 491
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 3 cut(s) 226, 385, 580
Bpu10I CCTNAGC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 269, 607
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 269, 607
BseGI GGATG 1 cut(s) 595
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 205
BshFI GGCC 1 cut(s) 549
BslFI GGGAC 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 1 cut(s) 549
Bso31I GGTCTC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 295, 711
BspACI CCGC 2 cut(s) 254, 456
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 596
BsrBI CCGCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 269, 607
BssMI GATC 2 cut(s) 295, 711
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 142, 375
Bst6I CTCTTC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 628
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 595
BstKTI GATC 2 cut(s) 298, 714
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 2 cut(s) 295, 711
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 607
BsuRI GGCC 1 cut(s) 549
BtsCI GGATG 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 628
Cfr13I GGNCC 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 1 cut(s) 310
CviJI RGCY 8 cut(s) 95, 210, 437, 459, 482, 549, 626, 638
CviKI_1 RGCY 8 cut(s) 95, 210, 437, 459, 482, 549, 626, 638
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 297, 713
DpnII GATC 2 cut(s) 295, 711
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 75, 188
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 1 cut(s) 313
FaiI YATR 9 cut(s) 83, 233, 311, 408, 444, 596, 635, 705, 720
FaqI GGGAC 1 cut(s) 361
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 457
FspBI CTAG 3 cut(s) 221, 474, 491
GluI GCNGC 1 cut(s) 457
HaeIII GGCC 1 cut(s) 549
Hin1II CATG 1 cut(s) 313
HinfI GANTC 4 cut(s) 8, 332, 566, 688
HphI GGTGA 2 cut(s) 236, 706
Hpy188III TCNNGA 5 cut(s) 491, 570, 641, 679, 692
HpyAV CCTTC 3 cut(s) 83, 163, 592
HpyCH4III ACNGT 2 cut(s) 142, 375
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 197, 319, 730
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 295, 711
LmnI GCTCC 3 cut(s) 92, 251, 403
LpnPI CCDG 5 cut(s) 186, 464, 594, 621, 705
LweI GCATC 3 cut(s) 226, 385, 580
MaeI CTAG 3 cut(s) 221, 474, 491
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 153, 382, 523
MalI GATC 2 cut(s) 297, 713
MbiI CCGCTC 1 cut(s) 254
MboI GATC 2 cut(s) 295, 711
MboII GAAGA 5 cut(s) 68, 269, 571, 667, 694
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 4 cut(s) 276, 519, 540, 706
MlyI GAGTC 2 cut(s) 341, 682
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 3 cut(s) 139, 478, 616
MseI TTAA 3 cut(s) 117, 614, 651
MslI CAYNNNNRTG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 609
NdeII GATC 2 cut(s) 295, 711
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 313
PciI ACATGT 1 cut(s) 309
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 8, 566
PkrI GCNGC 1 cut(s) 458
PleI GAGTC 2 cut(s) 340, 682
PpsI GAGTC 2 cut(s) 340, 682
Ppu21I YACGTR 1 cut(s) 110
PscI ACATGT 1 cut(s) 309
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 3 cut(s) 117, 614, 651
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 2 cut(s) 295, 711
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 341, 682
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 1 cut(s) 212
SetI ASST 5 cut(s) 112, 226, 271, 489, 719
SfaNI GCATC 3 cut(s) 226, 385, 580
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 4 cut(s) 276, 519, 540, 706
SsiI CCGC 2 cut(s) 254, 456
SspMI CTAG 3 cut(s) 221, 474, 491
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 142, 375
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 298
TasI AATT 4 cut(s) 276, 519, 540, 706
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 2 cut(s) 8, 566
Tru1I TTAA 3 cut(s) 117, 614, 651
Tru9I TTAA 3 cut(s) 117, 614, 651
TseFI GTSAC 1 cut(s) 523
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 2 cut(s) 459, 611
TspGWI ACGGA 2 cut(s) 279, 442
VpaK11BI GGWCC 1 cut(s) 266
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 540
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 313
XspI CTAG 3 cut(s) 221, 474, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.