Rroxscaffold_3G00233060
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000329
Physical Location & Seq
Forward (+)
18875607 .. 18878486
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233060.1

Sequence Viewer

Length: 639 bp
ATGTGGGCTTGGGCCTGTCCTTTGTTGGATTGCTCAAGTAGAGTTTTTGGTTGGGACTTCCTTCTTGGGGATTTGCAATTGGTGTATGAGCCCAATGCTTTGTTAGGGTTCGCATTTGGGATCCAGGAGATTGTTTATGGGTTCAATATTTTTTGGCATGTTGGAATGGGTTTTTTTGGCTACTCGGGTAGAAGATTGCTCTCTATTCGACGTATTATTTTGTGTGGAGTAGGTAAGGTCGGTCACCTTGCCGCCGGTTATCTTGATAGAAGGTTACCCTCTATTCGACGTATATCTTTGCGTGGAAGTATGGTCGACCATACTATTGGTACCGTTTTACATAGCCACGATTCTCTCGGCTTTGGGTGGGACTCCATCATGAAGAGAATCACTACTAGTGATGAAGTATGGGAATATTACTTCAAGGCACACCCAAAACATAGAAGCCTTCGCAACCGGACTTTCATAGACTATGAGGATTTGAAAATTGCAGTGGGAAACGGAATTGCAACTGGAAAGTTTTCAATTAGCCTGGGCAATGATACTGATGCAACCACATACATGGTTGAGGAAAGTGAAAGTGGTGCTTTGAATGACTTGGTCTATAACAAAAATGCTGATGCATTCATGATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

212

Amino Acids

23.93

Weight (kDa)

6.65

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 315
AciI CCGC 1 cut(s) 252
AclWI GGATC 2 cut(s) 115, 128
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 5 cut(s) 145, 424, 484, 525, 592
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 2 cut(s) 123, 531
AlwI GGATC 2 cut(s) 115, 128
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 520
Asp718I GGTACC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 184
BamHI GGATCC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 93
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 125, 533
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 125, 533
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 122, 331
BmrFI CCNGG 2 cut(s) 125, 533
BmsI GCATC 2 cut(s) 538, 610
BpuEI CTTGAG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 532
BsaWI WCCGGW 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 2 cut(s) 125, 533
BseDI CCNNGG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 544
BseNI ACTGG 1 cut(s) 517
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 2 cut(s) 255, 457
BslFI GGGAC 2 cut(s) 68, 383
BslI CCNNNNNNNGG 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 68, 383
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 14
BspHI TCATGA 2 cut(s) 378, 627
BspLI GGNNCC 2 cut(s) 122, 331
BspPI GGATC 2 cut(s) 115, 128
BspT107I GGYRCC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 544
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 125, 533
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 377
BstEII GGTNACC 2 cut(s) 242, 273
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 2 cut(s) 125, 533
BstNSI RCATGY 1 cut(s) 161
BstPI GGTNACC 2 cut(s) 242, 273
BstSCI CCNGG 2 cut(s) 123, 531
BstX2I RGATCY 1 cut(s) 120
BstXI CCANNNNNNTGG 2 cut(s) 326, 562
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
CciI TCATGA 2 cut(s) 378, 627
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 330
CviAII CATG 4 cut(s) 158, 379, 562, 628
CviJI RGCY 8 cut(s) 8, 14, 91, 180, 345, 360, 447, 531
CviKI_1 RGCY 8 cut(s) 8, 14, 91, 180, 345, 360, 447, 531
CviQI GTAC 1 cut(s) 330
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 184
Eco91I GGTNACC 2 cut(s) 242, 273
EcoO65I GGTNACC 2 cut(s) 242, 273
EcoRII CCWGG 2 cut(s) 123, 531
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 4 cut(s) 161, 382, 565, 631
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FaqI GGGAC 2 cut(s) 68, 383
FatI CATG 4 cut(s) 157, 378, 561, 627
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 255, 457
Hin1II CATG 4 cut(s) 161, 382, 565, 631
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 350, 371, 387
HpaII CCGG 2 cut(s) 255, 457
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 263, 379, 628
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 2 cut(s) 213, 291
HpyAV CCTTC 3 cut(s) 71, 264, 458
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 2 cut(s) 211, 289
HpyCH4V TGCA 5 cut(s) 76, 491, 509, 551, 623
HpySE526I ACGT 2 cut(s) 211, 289
Hsp92II CATG 4 cut(s) 161, 382, 565, 631
KpnI GGTACC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 8 cut(s) 28, 110, 137, 268, 470, 498, 518, 545
LweI GCATC 2 cut(s) 538, 610
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 211, 289
MaeIII GTNAC 2 cut(s) 242, 273
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 204, 394
MfeI CAATTG 1 cut(s) 77
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 4 cut(s) 77, 486, 504, 525
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 6, 142
MnlI CCTC 3 cut(s) 289, 469, 562
Mph1103I ATGCAT 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 520
MslI CAYNNNNRTG 1 cut(s) 560
MspI CCGG 2 cut(s) 255, 457
MspR9I CCNGG 2 cut(s) 125, 533
MunI CAATTG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 2 cut(s) 125, 533
NdeII GATC 1 cut(s) 120
NlaIII CATG 4 cut(s) 161, 382, 565, 631
NlaIV GGNNCC 2 cut(s) 122, 331
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 242
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 161
PagI TCATGA 2 cut(s) 378, 627
PctI GAATGC 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 2 cut(s) 350, 387
PflFI GACNNNGTC 1 cut(s) 599
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 123, 531
PspEI GGTNACC 2 cut(s) 242, 273
PspGI CCWGG 2 cut(s) 123, 531
PspN4I GGNNCC 2 cut(s) 122, 331
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 599
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 560
SalI GTCGAC 1 cut(s) 314
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 125, 533
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 214, 235, 240, 249, 275, 292
SfaNI GCATC 2 cut(s) 538, 610
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 4 cut(s) 77, 486, 504, 525
SsiI CCGC 1 cut(s) 252
SspI AATATT 2 cut(s) 148, 416
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 123, 531
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 2 cut(s) 214, 292
TaqI TCGA 3 cut(s) 208, 286, 315
TaqII GACCGA 1 cut(s) 230
TasI AATT 4 cut(s) 77, 486, 504, 525
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 350, 387
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 4 cut(s) 395, 417, 454, 616
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 1 cut(s) 498
Tth111I GACNNNGTC 1 cut(s) 599
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.