Rw7G035380
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000329
Physical Location & Seq
Reverse (-)
52753336 .. 52754239
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035380.1

Sequence Viewer

Length: 708 bp
ATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGACATCTTAAGGAAGCAAACAGTGGAAGAAAGAATACTTCCTATTCTTAATGCAAAACTTGGCTCTGGTTTTGGATTTGATTCAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGGAGGAATACCTTAAGGCTCACCCAAAGGACACTGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGTGGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTACTGATGCAAGAATATTAGGTGTTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCCTCAACTCATCCAACATCACCCCTCCAATCCCTTGAAATTTTGGAGGTTCCGAGGCGAGGAACAACCCAAAATAAAAGAAGTAGAACCGATTATGAAAGAAATTCTAACTCAATTGGGGGCGCCCCTCAAAGTGGCGTTATGGAGAAGCTTGATAAACTTTACTCTGTTTTTGAAGTAATGATTAATTTACTAGAGAAAAGAGAGCAACAAAGTAAAATTTGGGATGCTATCATGGAGATCCCAAACTTGGATGAAGCTACCGGTTTCAAGGCTCTTGAGTTGCTTGATACCAAAACAAAAAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

235

Amino Acids

26.28

Weight (kDa)

4.78

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 206 - 235 9.2e-12 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 518
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 631
AcsI RAATTY 3 cut(s) 435, 499, 615
AcyI GRCGYC 1 cut(s) 519
AfiI CCNNNNNNNGG 4 cut(s) 18, 455, 530, 646
AflII CTTAAG 2 cut(s) 46, 170
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 4 cut(s) 123, 434, 572, 667
AjuI GAANNNNNNNTTGG 4 cut(s) 225, 257, 360, 392
AluBI AGCT 2 cut(s) 547, 656
AluI AGCT 2 cut(s) 547, 656
AlwI GGATC 1 cut(s) 631
ApoI RAATTY 3 cut(s) 435, 499, 615
AseI ATTAAT 1 cut(s) 582
AsiGI ACCGGT 1 cut(s) 659
AspLEI GCGC 2 cut(s) 201, 521
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 170, 329, 408
AvaII GGWCC 1 cut(s) 380
BanI GGYRCC 1 cut(s) 518
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 1 cut(s) 348
BccI CCATC 1 cut(s) 18
BfaI CTAG 1 cut(s) 590
BfoI RGCGCY 1 cut(s) 522
BfrI CTTAAG 2 cut(s) 46, 170
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 2 cut(s) 447, 520
BmsI GCATC 2 cut(s) 286, 613
BpiI GAAGAC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 519
BsaJI CCNNGG 1 cut(s) 449
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 455, 530, 646
Bse118I RCCGGY 1 cut(s) 659
BseDI CCNNGG 1 cut(s) 449
BseGI GGATG 4 cut(s) 29, 406, 628, 655
BseLI CCNNNNNNNGG 4 cut(s) 18, 455, 530, 646
Bsh1285I CGRYCG 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 518
BshTI ACCGGT 1 cut(s) 659
BsiEI CGRYCG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 4 cut(s) 18, 455, 530, 646
BsmFI GGGAC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 636
BspACI CCGC 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 447, 520
BspPI GGATC 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 518
BspTI CTTAAG 2 cut(s) 46, 170
BsrFI RCCGGY 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 1 cut(s) 449
BssMI GATC 1 cut(s) 636
BssNI GRCGYC 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 519
BstAFI CTTAAG 2 cut(s) 46, 170
BstC8I GCNNGC 1 cut(s) 334
BstF5I GGATG 4 cut(s) 29, 406, 628, 655
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 2 cut(s) 201, 521
BstKTI GATC 1 cut(s) 639
BstMBI GATC 1 cut(s) 636
BstMCI CGRYCG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BtsCI GGATG 4 cut(s) 29, 406, 628, 655
BtsIMutI CAGTG 2 cut(s) 66, 189
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 2 cut(s) 201, 521
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 380
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 2 cut(s) 333, 631
CviJI RGCY 5 cut(s) 102, 176, 547, 656, 671
CviKI_1 RGCY 5 cut(s) 102, 176, 547, 656, 671
DinI GGCGCC 1 cut(s) 520
DpnI GATC 1 cut(s) 638
DpnII GATC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 380
EcoT22I ATGCAT 1 cut(s) 338
EgeI GGCGCC 1 cut(s) 520
EheI GGCGCC 1 cut(s) 520
FaeI CATG 2 cut(s) 336, 634
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 332, 630
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 4 cut(s) 36, 393, 635, 662
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 590
GlaI GCGC 2 cut(s) 200, 520
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 522
HapII CCGG 1 cut(s) 660
HhaI GCGC 2 cut(s) 201, 521
Hin1I GRCGYC 1 cut(s) 519
Hin1II CATG 2 cut(s) 336, 634
Hin6I GCGC 2 cut(s) 199, 519
HinP1I GCGC 2 cut(s) 199, 519
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 660
HphI GGTGA 3 cut(s) 170, 329, 408
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 1 cut(s) 674
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 92, 299, 336
Hsp92I GRCGYC 1 cut(s) 519
Hsp92II CATG 2 cut(s) 336, 634
HspAI GCGC 2 cut(s) 199, 519
KasI GGCGCC 1 cut(s) 518
Kzo9I GATC 1 cut(s) 636
LpnPI CCDG 2 cut(s) 90, 673
LweI GCATC 2 cut(s) 286, 613
MaeI CTAG 1 cut(s) 590
MaeIII GTNAC 3 cut(s) 29, 38, 289
MalI GATC 1 cut(s) 638
MboI GATC 1 cut(s) 636
MboII GAAGA 2 cut(s) 77, 353
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 636
MluCI AATT 6 cut(s) 234, 435, 499, 510, 583, 615
Mly113I GGCGCC 1 cut(s) 519
MmeI TCCRAC 2 cut(s) 358, 434
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 4 cut(s) 47, 87, 171, 582
MspCI CTTAAG 2 cut(s) 46, 170
MspI CCGG 1 cut(s) 660
MunI CAATTG 1 cut(s) 510
NarI GGCGCC 1 cut(s) 519
NdeII GATC 1 cut(s) 636
NlaIII CATG 2 cut(s) 336, 634
NlaIV GGNNCC 2 cut(s) 447, 520
NmuCI GTSAC 2 cut(s) 29, 38
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 336
PaeI GCATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 119
PinAI ACCGGT 1 cut(s) 659
PkrI GCNGC 1 cut(s) 13
PluTI GGCGCC 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 447, 520
PspPI GGNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 636
SaqAI TTAA 4 cut(s) 47, 87, 171, 582
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 636
Sau96I GGNCC 1 cut(s) 380
SetI ASST 7 cut(s) 137, 171, 313, 325, 447, 549, 658
SfaNI GCATC 2 cut(s) 286, 613
SfoI GGCGCC 1 cut(s) 520
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 3 cut(s) 46, 170, 674
SmoI CTYRAG 3 cut(s) 46, 170, 674
SphI GCATGC 1 cut(s) 336
Sse9I AATT 6 cut(s) 234, 435, 499, 510, 583, 615
SsiI CCGC 1 cut(s) 12
SspDI GGCGCC 1 cut(s) 518
SspI AATATT 1 cut(s) 306
SspMI CTAG 1 cut(s) 590
TaaI ACNGT 1 cut(s) 61
TaqII GACCGA 1 cut(s) 262
TasI AATT 6 cut(s) 234, 435, 499, 510, 583, 615
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 47, 87, 171, 582
Tru9I TTAA 4 cut(s) 47, 87, 171, 582
TscAI CASTG 2 cut(s) 66, 196
TseFI GTSAC 2 cut(s) 29, 38
Tsp45I GTSAC 2 cut(s) 29, 38
TspDTI ATGAA 3 cut(s) 165, 507, 666
TspRI CASTG 2 cut(s) 66, 196
Vha464I CTTAAG 2 cut(s) 46, 170
VpaK11BI GGWCC 1 cut(s) 380
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 3 cut(s) 435, 499, 615
XceI RCATGY 1 cut(s) 336
XspI CTAG 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.