Rw4G009960
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000329
Physical Location & Seq
Reverse (-)
22688855 .. 22689902
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009960.1

Sequence Viewer

Length: 948 bp
ATGGTTGATCCACAACAAGATGGAAAAAAAAATGGGAATTATGAGCAGTGGACCAAGGAAGAGAGTGATACCTTATTAGAACTAATGGTTGATGCCGCCGTTAGGGGATGGCGTGACAATAGTGGCATTTTAAGTAAGCAAACAGTGGAAGAAAGAATACTTCCTGTTCTTAATGCAAAACTTGGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGCTTAGATGGTTTAAAGGTCGATGGAATTCTTACTCTACTCTTATGCGTTTTAGCTCTGGTTTTGGATTTGATTCAAATACAAAGAGCTTTACTGCTTCTAATGAAGTATGGGACGAATACCTTAAGGCTCACCCAAAGGACACCGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTACTGATGCAAGAACATTAGGTGTTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATCCAACATCACCCCTCCAATCCCCTGAAATTTTGGAGGTTCCGAGGCGAGGAACAACCCAAAATAAAAGAAGTAGAACCGAGTATGAAGGAAATTCTAACTCAATTGGGGGCACCCCTCAAAGTGGCGTTATGGAGAAGCTTGATAAACTTTACTCTGGTTTTGAAGTCATGATTAACTTACTAGAGAAAAGAGAGCGACAAAATAAAATTTGGGATGCTATCATGGAGATCCCAAACTTGGATGAAGCTACCGGTTTCAAGGCTCTTGAGTTGCTTGATACCAAAACAAAAAAAGATGGATTCTTGAATATGTCTCCTCAACAGCGATCAAATTGGATATTCCACAAGTTAGGAGGATATGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

315

Amino Acids

35.68

Weight (kDa)

5.18

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 113 3.7e-16 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 263 - 309 2e-22 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 689
AciI CCGC 2 cut(s) 96, 428
AclWI GGATC 2 cut(s) 2, 802
AcsI RAATTY 4 cut(s) 244, 606, 670, 786
AfiI CCNNNNNNNGG 4 cut(s) 102, 626, 701, 817
AflII CTTAAG 1 cut(s) 341
AgeI ACCGGT 1 cut(s) 830
AgsI TTSAA 4 cut(s) 294, 743, 838, 886
AjuI GAANNNNNNNTTGG 4 cut(s) 396, 428, 531, 563
AluBI AGCT 4 cut(s) 273, 306, 718, 827
AluI AGCT 4 cut(s) 273, 306, 718, 827
Alw26I GTCTC 1 cut(s) 897
AlwI GGATC 2 cut(s) 2, 802
ApoI RAATTY 4 cut(s) 244, 606, 670, 786
AsiGI ACCGGT 1 cut(s) 830
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 51, 551
AsuHPI GGTGA 3 cut(s) 341, 500, 579
AvaII GGWCC 2 cut(s) 51, 551
BaeGI GKGCMC 1 cut(s) 692
BanI GGYRCC 1 cut(s) 689
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 1 cut(s) 519
BccI CCATC 6 cut(s) 14, 102, 219, 234, 577, 869
BceAI ACGGC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 1 cut(s) 761
BfrI CTTAAG 1 cut(s) 341
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 51, 551
BmgT120I GGNCC 2 cut(s) 51, 551
BmiI GGNNCC 2 cut(s) 618, 691
BmsI GCATC 3 cut(s) 82, 457, 784
BpiI GAAGAC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 54, 620
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 626, 701, 817
Bse118I RCCGGY 1 cut(s) 830
BseDI CCNNGG 2 cut(s) 54, 620
BseGI GGATG 4 cut(s) 113, 577, 799, 826
BseLI CCNNNNNNNGG 4 cut(s) 102, 626, 701, 817
BseRI GAGGAG 1 cut(s) 885
BseSI GKGCMC 1 cut(s) 692
Bsh1285I CGRYCG 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 689
BshTI ACCGGT 1 cut(s) 830
BsiEI CGRYCG 1 cut(s) 447
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 2 cut(s) 344, 391
BslI CCNNNNNNNGG 4 cut(s) 102, 626, 701, 817
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 2 cut(s) 344, 391
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 3 cut(s) 7, 807, 905
BspACI CCGC 2 cut(s) 96, 428
BspHI TCATGA 1 cut(s) 747
BspLI GGNNCC 2 cut(s) 618, 691
BspPI GGATC 2 cut(s) 2, 802
BspT107I GGYRCC 1 cut(s) 689
BspTI CTTAAG 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 830
BssAI RCCGGY 1 cut(s) 830
BssECI CCNNGG 2 cut(s) 54, 620
BssMI GATC 3 cut(s) 7, 807, 905
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 218, 505
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 4 cut(s) 113, 577, 799, 826
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 3 cut(s) 10, 810, 908
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 3 cut(s) 7, 807, 905
BstMCI CGRYCG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
BtsCI GGATG 4 cut(s) 113, 577, 799, 826
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 53, 150
Cac8I GCNNGC 2 cut(s) 218, 505
CciI TCATGA 1 cut(s) 747
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 830
Cfr13I GGNCC 2 cut(s) 51, 551
CspAI ACCGGT 1 cut(s) 830
CviAII CATG 3 cut(s) 504, 748, 802
CviJI RGCY 7 cut(s) 220, 273, 306, 347, 718, 827, 842
CviKI_1 RGCY 7 cut(s) 220, 273, 306, 347, 718, 827, 842
DdeI CTNAG 1 cut(s) 221
DpnI GATC 3 cut(s) 9, 809, 907
DpnII GATC 3 cut(s) 7, 807, 905
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 51, 551
EcoRI GAATTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 507, 751, 805
FaqI GGGAC 2 cut(s) 344, 391
FatI CATG 3 cut(s) 503, 747, 801
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 4 cut(s) 120, 564, 806, 833
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 761
GlaI GCGC 1 cut(s) 371
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 831
HhaI GCGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 507, 751, 805
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 2 cut(s) 290, 879
HpaII CCGG 1 cut(s) 831
HphI GGTGA 3 cut(s) 341, 500, 579
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 621
Hpy188III TCNNGA 3 cut(s) 748, 845, 883
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 485, 659
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 176, 470, 507
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 3 cut(s) 507, 751, 805
HspAI GCGC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 7, 807, 905
LpnPI CCDG 6 cut(s) 177, 202, 261, 615, 720, 844
LweI GCATC 3 cut(s) 82, 457, 784
MaeI CTAG 1 cut(s) 761
MaeIII GTNAC 3 cut(s) 113, 188, 460
MalI GATC 3 cut(s) 9, 809, 907
MboI GATC 3 cut(s) 7, 807, 905
MboII GAAGA 3 cut(s) 71, 161, 524
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 9 cut(s) 37, 244, 405, 606, 670, 681, 786, 910, 941
MmeI TCCRAC 2 cut(s) 529, 605
MnlI CCTC 9 cut(s) 388, 493, 602, 607, 615, 620, 705, 906, 926
Mph1103I ATGCAT 1 cut(s) 509
MseI TTAA 5 cut(s) 131, 171, 231, 342, 753
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 1 cut(s) 831
MunI CAATTG 1 cut(s) 681
NdeII GATC 3 cut(s) 7, 807, 905
NlaIII CATG 3 cut(s) 507, 751, 805
NlaIV GGNNCC 2 cut(s) 618, 691
NmuCI GTSAC 2 cut(s) 113, 188
NsiI ATGCAT 1 cut(s) 509
NspI RCATGY 1 cut(s) 507
PaeI GCATGC 1 cut(s) 507
PagI TCATGA 1 cut(s) 747
PfeI GAWTC 2 cut(s) 290, 879
PinAI ACCGGT 1 cut(s) 830
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 618, 691
PspPI GGNCC 2 cut(s) 51, 551
PsuI RGATCY 1 cut(s) 807
SaqAI TTAA 5 cut(s) 131, 171, 231, 342, 753
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 7, 807, 905
Sau96I GGNCC 2 cut(s) 51, 551
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 3 cut(s) 82, 457, 784
SinI GGWCC 2 cut(s) 51, 551
SmlI CTYRAG 2 cut(s) 341, 845
SmoI CTYRAG 2 cut(s) 341, 845
SphI GCATGC 1 cut(s) 507
Sse9I AATT 9 cut(s) 37, 244, 405, 606, 670, 681, 786, 910, 941
SsiI CCGC 2 cut(s) 96, 428
SspMI CTAG 1 cut(s) 761
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 238
TaqII GACCGA 1 cut(s) 433
TasI AATT 9 cut(s) 37, 244, 405, 606, 670, 681, 786, 910, 941
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 290, 879
Tru1I TTAA 5 cut(s) 131, 171, 231, 342, 753
Tru9I TTAA 5 cut(s) 131, 171, 231, 342, 753
TscAI CASTG 2 cut(s) 53, 150
TseFI GTSAC 2 cut(s) 113, 188
Tsp45I GTSAC 2 cut(s) 113, 188
TspDTI ATGAA 3 cut(s) 336, 678, 837
TspRI CASTG 2 cut(s) 53, 150
Vha464I CTTAAG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 51, 551
XapI RAATTY 4 cut(s) 244, 606, 670, 786
XceI RCATGY 1 cut(s) 507
XspI CTAG 1 cut(s) 761
Zsp2I ATGCAT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.