Rroxscaffold_4G00319390

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000329
Physical Location & Seq
Reverse (-)
47179305 .. 47180771
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319390.1

Sequence Viewer

Length: 324 bp
ATGGGAGACTCGCATGGAAATGGTAAACGAATGGATCATAAACCTTGGACTGCAGAAGAGAGCAATGTTTTGCTTCAACTCATGGTTGAAGGTGCCAAACTTGGGTTGCGTGATATAGTGAGAAGCAAACAAACAGTAGAGGTATTTTCTCTATTAGCTATGTCTGAAATGGACATGTATGGAGCTGATGAACAGGAAGAAGAGTTTTATGAGGCTATTAAGATTTTATTAATGGCAATACAAGCATTGGTTTATGTGTTATATGACCTTGTGTTCAGCATACGTGGTGAACGTATTAGACGTCCACGACATGGCGACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

107

Amino Acids

12.32

Weight (kDa)

5.14

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 311
AclWI GGATC 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 301
AfiI CCNNNNNNNGG 2 cut(s) 102, 311
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 77, 89
AluBI AGCT 2 cut(s) 158, 185
AluI AGCT 2 cut(s) 158, 185
AlwI GGATC 1 cut(s) 42
AseI ATTAAT 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 94
BsaAI YACGTR 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 311
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 102, 311
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 102, 311
Bsp143I GATC 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 51, 195
BstACI GRCGYC 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 284
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 51
CviAII CATG 4 cut(s) 14, 82, 175, 311
CviJI RGCY 3 cut(s) 158, 185, 215
CviKI_1 RGCY 3 cut(s) 158, 185, 215
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 51, 195
EarI CTCTTC 2 cut(s) 51, 195
Eco130I CCWWGG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 4 cut(s) 17, 85, 178, 314
FatI CATG 4 cut(s) 13, 81, 174, 310
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 4 cut(s) 17, 85, 178, 314
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 3 cut(s) 26, 290, 305
Hpy188I TCNGA 1 cut(s) 166
Hpy8I GTNNAC 3 cut(s) 26, 290, 305
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 3 cut(s) 283, 292, 301
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpySE526I ACGT 3 cut(s) 283, 292, 301
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 4 cut(s) 17, 85, 178, 314
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 1 cut(s) 179
MaeII ACGT 3 cut(s) 283, 292, 301
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 68, 209, 212
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 133, 205
MseI TTAA 2 cut(s) 219, 230
MslI CAYNNNNRTG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 17, 85, 178, 314
NlaIV GGNNCC 1 cut(s) 94
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 2 cut(s) 289, 298
PflMI CCANNNNNTGG 1 cut(s) 311
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 1 cut(s) 284
PscI ACATGT 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 219, 230
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 2
SetI ASST 9 cut(s) 46, 94, 144, 160, 187, 270, 286, 295, 304
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 3 cut(s) 286, 295, 304
Tru1I TTAA 2 cut(s) 219, 230
Tru9I TTAA 2 cut(s) 219, 230
TspDTI ATGAA 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 311
VspI ATTAAT 1 cut(s) 230
XceI RCATGY 1 cut(s) 178
ZraI GACGTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.