RchiOBHm_Chr3g0476481
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000329
Physical Location & Seq
Forward (+)
22415520 .. 22416570
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44190

Sequence Viewer

Length: 954 bp
ATGGGTGATTCACAACAAGATGCCAAAAAAAGGGGGGGGGGGGGGGTTATGAGCAGTGGAGCAAGGAAGAGAGCAATTTATTGGCTCATGGTTGATGCTGCCACTCGGGGATGGCGTGACAATAGTGGTATCTTTTCCAAGCAAACAGTGGAAGAAAGAATACTTCCCGTTCTTAATTCAAAACTTGGGTGTCATAAGACCTACAACAATTACCAAAGCCGGTTGAAGTGGTTTAAAAATCGATGGGATTCTTATTCAGCCCTAATGCGATTCAGCTTTGGTTTTGTGTTTCACTCAACTACAAAGAGGTTCACTGCTTCAGATGAAGTAAGGGAAGATTACCTAAAGGCTCACCCAAACGATGCCAATTTACGCTATGGGATATTTCATGATTATGAGGACTTGGAGATTGCTATTGCGAATGGTGTTGCTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCTATCGATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATATGCATAGAAGAATTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAATGATCGATCATTTCACTCCACATCACCTCTAGGGTCGCCTGAAATTTTAGAGGTTCCCAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACCGAGTATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGTCTATAGCCTATTGGCGAAGAGAGAAAGAGTATTGGAGAAAAGAGAAAGGGAGAGAGAATATACAACTTGGGATGCTATCAAGGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGAGTTGCTTGACACCCAAACAAAAAAAGATGGTTTCCTGAAGATGTCTCCTGAAGAACGAGCAAATTGGATATTCCACAAGATGCGAGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

317

Amino Acids

36.58

Weight (kDa)

7.04

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 25 - 114 8.9e-10 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 268 - 313 7.8e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 814
AcsI RAATTY 3 cut(s) 518, 609, 711
AcuI CTGAAG 3 cut(s) 303, 917, 930
AfiI CCNNNNNNNGG 4 cut(s) 30, 629, 686, 829
AgsI TTSAA 4 cut(s) 180, 226, 728, 850
AluBI AGCT 2 cut(s) 276, 839
AluI AGCT 2 cut(s) 276, 839
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 1 cut(s) 814
Ama87I CYCGRG 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 3 cut(s) 518, 609, 711
Asp700I GAANNNNTTC 1 cut(s) 840
AspLEI GCGC 1 cut(s) 856
AsuHPI GGTGA 3 cut(s) 17, 344, 582
AvaI CYCGRG 1 cut(s) 105
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbvI GCAGC 1 cut(s) 85
BccI CCATC 3 cut(s) 105, 237, 881
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 736
BfoI RGCGCY 1 cut(s) 857
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 621
BmsI GCATC 6 cut(s) 10, 85, 352, 460, 796, 930
BpuEI CTTGAG 1 cut(s) 878
Bsa29I ATCGAT 3 cut(s) 241, 468, 571
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 629, 686, 829
Bse118I RCCGGY 1 cut(s) 219
BseCI ATCGAT 3 cut(s) 241, 468, 571
BseGI GGATG 2 cut(s) 116, 811
BseLI CCNNNNNNNGG 4 cut(s) 30, 629, 686, 829
BseXI GCAGC 1 cut(s) 85
BshVI ATCGAT 3 cut(s) 241, 468, 571
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 4 cut(s) 30, 629, 686, 829
BsmAI GTCTC 1 cut(s) 909
BsoBI CYCGRG 1 cut(s) 105
Bsp143I GATC 3 cut(s) 568, 572, 819
BspDI ATCGAT 3 cut(s) 241, 468, 571
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 621
BspPI GGATC 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssMI GATC 3 cut(s) 568, 572, 819
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 62, 746
BstF5I GGATG 2 cut(s) 116, 811
BstH2I RGCGCY 1 cut(s) 857
BstHHI GCGC 1 cut(s) 856
BstKTI GATC 3 cut(s) 571, 575, 822
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 3 cut(s) 568, 572, 819
BstMWI GCNNNNNNNGC 2 cut(s) 470, 862
BstSFI CTRYAG 1 cut(s) 736
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 819
BstYI RGATCY 1 cut(s) 819
Bsu15I ATCGAT 3 cut(s) 241, 468, 571
BsuTUI ATCGAT 3 cut(s) 241, 468, 571
BtsCI GGATG 2 cut(s) 116, 811
BtsI GCAGTG 2 cut(s) 61, 312
BtsIMutI CAGTG 3 cut(s) 61, 153, 312
CciI TCATGA 1 cut(s) 388
CfoI GCGC 1 cut(s) 856
Cfr10I RCCGGY 1 cut(s) 219
ClaI ATCGAT 3 cut(s) 241, 468, 571
CviAII CATG 3 cut(s) 88, 389, 829
CviJI RGCY 7 cut(s) 85, 219, 260, 276, 350, 741, 839
CviKI_1 RGCY 7 cut(s) 85, 219, 260, 276, 350, 741, 839
DpnI GATC 3 cut(s) 570, 574, 821
DpnII GATC 3 cut(s) 568, 572, 819
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 62, 746
EarI CTCTTC 2 cut(s) 62, 746
Eco57I CTGAAG 3 cut(s) 303, 917, 930
Eco88I CYCGRG 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 518
EcoT22I ATGCAT 1 cut(s) 512
FaeI CATG 3 cut(s) 91, 392, 832
FatI CATG 3 cut(s) 87, 388, 828
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 123, 818
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 596
GlaI GCGC 1 cut(s) 855
GluI GCNGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 857
HapII CCGG 1 cut(s) 220
HhaI GCGC 1 cut(s) 856
Hin1II CATG 3 cut(s) 91, 392, 832
Hin6I GCGC 1 cut(s) 854
HinP1I GCGC 1 cut(s) 854
HinfI GANTC 4 cut(s) 8, 248, 270, 732
HpaII CCGG 1 cut(s) 220
HphI GGTGA 3 cut(s) 17, 344, 582
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 322, 564
Hpy188III TCNNGA 3 cut(s) 389, 895, 908
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 722
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 473, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 862
Hsp92II CATG 3 cut(s) 91, 392, 832
HspAI GCGC 1 cut(s) 854
Kzo9I GATC 3 cut(s) 568, 572, 819
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 4 cut(s) 233, 618, 908, 921
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 6 cut(s) 10, 85, 352, 460, 796, 930
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 1 cut(s) 116
MalI GATC 3 cut(s) 570, 574, 821
MboI GATC 3 cut(s) 568, 572, 819
MflI RGATCY 1 cut(s) 819
MluCI AATT 8 cut(s) 75, 175, 208, 367, 518, 609, 711, 922
MlyI GAGTC 1 cut(s) 741
MmeI TCCRAC 2 cut(s) 415, 469
MnlI CCTC 5 cut(s) 300, 391, 603, 610, 690
Mph1103I ATGCAT 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 840
MseI TTAA 3 cut(s) 174, 234, 705
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 470, 862
NdeII GATC 3 cut(s) 568, 572, 819
NlaIII CATG 3 cut(s) 91, 392, 832
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 116
NsiI ATGCAT 1 cut(s) 512
PagI TCATGA 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 3 cut(s) 8, 248, 270
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PspN4I GGNNCC 1 cut(s) 621
PsuI RGATCY 1 cut(s) 819
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 3 cut(s) 174, 234, 705
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 3 cut(s) 568, 572, 819
SchI GAGTC 1 cut(s) 741
SetI ASST 8 cut(s) 203, 278, 311, 345, 487, 595, 621, 841
SfaNI GCATC 6 cut(s) 10, 85, 352, 460, 796, 930
SfcI CTRYAG 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 8 cut(s) 75, 175, 208, 367, 518, 609, 711, 922
SspMI CTAG 1 cut(s) 596
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 5 cut(s) 241, 468, 522, 571, 716
TasI AATT 8 cut(s) 75, 175, 208, 367, 518, 609, 711, 922
TfiI GAWTC 3 cut(s) 8, 248, 270
Tru1I TTAA 3 cut(s) 174, 234, 705
Tru9I TTAA 3 cut(s) 174, 234, 705
TscAI CASTG 3 cut(s) 61, 153, 319
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 339, 377, 681
TspRI CASTG 3 cut(s) 61, 153, 319
XapI RAATTY 3 cut(s) 518, 609, 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.