RchiOBHm_Chr7g0237991
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000329
Physical Location & Seq
Reverse (-)
63317720 .. 63318032
313 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21329

Sequence Viewer

Length: 243 bp
ATGGGCACTTTCGGTCAGAACTTGAAAATTGCAGTTGGAAATGGAACTGCAACTGGAATGGGCTCAATCAGTCTATGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGGATCTTGGGGAATTGGTGGCATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCGCACCAAGAAAACTCGCCTTCTCTTTCACAACAACCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

80

Amino Acids

8.32

Weight (kDa)

4.05

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 127
AfaI GTAC 1 cut(s) 180
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 25
AlwI GGATC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 65
BccI CCATC 1 cut(s) 137
BmsI GCATC 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 8, 65
Bsp143I GATC 2 cut(s) 119, 157
BspACI CCGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 58
BssMI GATC 2 cut(s) 119, 157
BstKTI GATC 2 cut(s) 122, 160
BstMBI GATC 2 cut(s) 119, 157
BstNSI RCATGY 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 183
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 172
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
CviQI GTAC 1 cut(s) 179
DpnI GATC 2 cut(s) 121, 159
DpnII GATC 2 cut(s) 119, 157
Eco24I GRGCYC 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 76, 140, 173
FatI CATG 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 65
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 32, 50, 92
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 119, 157
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 1 cut(s) 39
LweI GCATC 1 cut(s) 79
MalI GATC 2 cut(s) 121, 159
MbiI CCGCTC 1 cut(s) 107
MboI GATC 2 cut(s) 119, 157
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 8, 65
MluCI AATT 2 cut(s) 27, 129
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 1 cut(s) 103
NdeII GATC 2 cut(s) 119, 157
NlaIII CATG 1 cut(s) 175
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PscI ACATGT 1 cut(s) 171
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
Sau3AI GATC 2 cut(s) 119, 157
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 2 cut(s) 8, 65
SfaNI GCATC 1 cut(s) 79
SgeI CNNG 6 cut(s) 34, 66, 135, 184, 218, 226
Sse9I AATT 2 cut(s) 27, 129
SsiI CCGC 1 cut(s) 107
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 27, 129
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.