RLG00000002205
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000329
Physical Location & Seq
Reverse (-)
29362194 .. 29362981
788 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002205

Sequence Viewer

Length: 690 bp
ATGAGATTCAGCTCTGGTTTTGGGTTTGACTCATCTACAAAGAGGTTCACTGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCCAAACGATACCAATTTACGCTATGGGATATTTCATGATTATGAGGACTTGGAGATTGTTATTGGGAATGGTGTTGCTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCTACCAATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATACACATAGAAGACTTCGATTATAATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAACGATCGATCATTTCGCTCCACATCACCTCTAGGGTCGCCTGAAATTTTAGAGGTTCCTAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACCGAGAATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGTCTATAGCCTATTGGTGAAGAGAGCAAGAGTATTGGAGAAAAGAGAAAGGGAGAAAGAATATACAACTTGGGATGCTATCAAGGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGAGTTGCTTGACACCCAAACAAAAAAAGATGGGTTCCTGAAGATGTCTCCTGAAGAACGAGCAAATTGGATATTCCACAAGATGCGAGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

230

Amino Acids

26.38

Weight (kDa)

5.31

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 180 - 225 4.7e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AclWI GGATC 1 cut(s) 550
AcsI RAATTY 2 cut(s) 345, 447
AcuI CTGAAG 3 cut(s) 39, 653, 666
AfiI CCNNNNNNNGG 3 cut(s) 365, 422, 565
AgsI TTSAA 2 cut(s) 464, 586
AluBI AGCT 2 cut(s) 12, 575
AluI AGCT 2 cut(s) 12, 575
Alw26I GTCTC 1 cut(s) 645
AlwI GGATC 1 cut(s) 550
ApoI RAATTY 2 cut(s) 345, 447
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 592
AsuHPI GGTGA 3 cut(s) 80, 318, 496
BbsI GAAGAC 1 cut(s) 258
BccI CCATC 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 472
BfoI RGCGCY 1 cut(s) 593
BmiI GGNNCC 2 cut(s) 357, 629
BmsI GCATC 2 cut(s) 532, 666
BpiI GAAGAC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 307
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 422, 565
BseCI ATCGAT 1 cut(s) 307
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 3 cut(s) 365, 422, 565
Bsh1285I CGRYCG 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 307
BslI CCNNNNNNNGG 3 cut(s) 365, 422, 565
BsmAI GTCTC 1 cut(s) 645
Bsp143I GATC 3 cut(s) 304, 308, 555
BspDI ATCGAT 1 cut(s) 307
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 357, 629
BspPI GGATC 1 cut(s) 550
BssMI GATC 3 cut(s) 304, 308, 555
Bst6I CTCTTC 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 360
BstENI CCTNNNNNAGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 307, 311, 558
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 3 cut(s) 304, 308, 555
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 206, 598
BstSFI CTRYAG 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
Bsu15I ATCGAT 1 cut(s) 307
BsuTUI ATCGAT 1 cut(s) 307
BtsCI GGATG 1 cut(s) 547
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
CciI TCATGA 1 cut(s) 124
CfoI GCGC 1 cut(s) 592
ClaI ATCGAT 1 cut(s) 307
CviAII CATG 2 cut(s) 125, 565
CviJI RGCY 4 cut(s) 12, 86, 477, 575
CviKI_1 RGCY 4 cut(s) 12, 86, 477, 575
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 306, 310, 557
DpnII GATC 3 cut(s) 304, 308, 555
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco57I CTGAAG 3 cut(s) 39, 653, 666
EcoNI CCTNNNNNAGG 1 cut(s) 363
FaeI CATG 2 cut(s) 128, 568
FatI CATG 2 cut(s) 124, 564
FokI GGATG 1 cut(s) 554
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 593
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 128, 568
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 3 cut(s) 6, 29, 468
HphI GGTGA 3 cut(s) 80, 318, 496
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 58, 300
Hpy188III TCNNGA 3 cut(s) 125, 631, 644
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 458
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 598
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 2 cut(s) 128, 568
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 3 cut(s) 304, 308, 555
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 3 cut(s) 354, 644, 657
LweI GCATC 2 cut(s) 532, 666
MaeI CTAG 1 cut(s) 332
MalI GATC 3 cut(s) 306, 310, 557
MboI GATC 3 cut(s) 304, 308, 555
MboII GAAGA 9 cut(s) 83, 242, 263, 381, 416, 499, 581, 646, 659
MflI RGATCY 1 cut(s) 555
MluCI AATT 4 cut(s) 103, 345, 447, 658
MlyI GAGTC 2 cut(s) 23, 477
MmeI TCCRAC 2 cut(s) 151, 205
MnlI CCTC 5 cut(s) 36, 127, 339, 346, 426
MroXI GAANNNNTTC 1 cut(s) 576
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 206, 598
NdeII GATC 3 cut(s) 304, 308, 555
NlaIII CATG 2 cut(s) 128, 568
NlaIV GGNNCC 2 cut(s) 357, 629
PagI TCATGA 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 6
Ple19I CGATCG 1 cut(s) 307
PleI GAGTC 2 cut(s) 23, 476
PpsI GAGTC 2 cut(s) 23, 476
PsiI TTATAA 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 357, 629
PsuI RGATCY 1 cut(s) 555
PvuI CGATCG 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 3 cut(s) 304, 308, 555
SchI GAGTC 2 cut(s) 23, 477
SetI ASST 7 cut(s) 14, 47, 81, 223, 331, 357, 577
SfaNI GCATC 2 cut(s) 532, 666
SfcI CTRYAG 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
Sse9I AATT 4 cut(s) 103, 345, 447, 658
SspMI CTAG 1 cut(s) 332
TaqI TCGA 3 cut(s) 258, 307, 452
TasI AATT 4 cut(s) 103, 345, 447, 658
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 75, 113, 417
TspRI CASTG 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 363
XapI RAATTY 2 cut(s) 345, 447
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.