RLG00000022934
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000329
Physical Location & Seq
Reverse (-)
15429214 .. 15430178
965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022934

Sequence Viewer

Length: 867 bp
ATGGTTGATGCTGCCACTCGGGGATGGCGTGATAATAGTGGTATCTTTTCCAAGCAAACAGTGGAAGAAAGAATACTTCCCGTTCTTAATTCAAAACTTGGGTGTCATAAGACCTACAACAATTACCAAAGCCGGTTGAAGTGGTTTAAAAATCGATGGGCTTCTTATTCAACCCTAATGCGATTCAGCTCTGGTTTTGGGTTTGACTCAACTACAAAGAGGTTCACTGCTTCAGATGAAGTATGGGAAGATTACCTAAAGGCTCACCCAAACGATACCAATTTACGCTATGGGATATTTCATGATTATGAGGACTTGGAGATTGCTATTGGGAATGGTGTTGCTGTTGGAAAAAACTCAATGGGGTTGGGTGGTGCTACCGATGCAAGAACATTAGGTGTTGGAGAAGATAGAGATATACGCATAGAAGACTTCGATTATGATGTAGATAGTGATGTGTTCGTAAGACCAAATCAGAATGATCGATCATTTCGCTCCACATCACCTCTAGGGTCACCTGAAATTTTAGAGGTTCCCAAGCAAGGAAGAACCCAAACCAAAAGAAATAGAACCGAGTATGAAGAAAACACCCCTCAAAGTGGCATTATGGAACAACTTAATAAAATTTCGACTACTTTTGAAGGAGTCTATAGCCTATTGGCGAAGAGAGAAAGAGTATTGGAGAAAAGAGAAAGGGAGAGAGAATATACAACTTGGGATGCTATCAAGGAGATCCCAAACATGGAAGAAGCTATTCGTTTCAAGGCGCTTGAGTTGCTTGACACCCAAACAAAAAAAGATGGTTTCCTGAAGATGTCTCCTAAAGAACGAGCAAATTGGATATTCCACAAGATGCGAGAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

289

Amino Acids

33.49

Weight (kDa)

6.94

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 85 2.3e-13 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 239 - 284 4e-23 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 2 cut(s) 522, 624
AcuI CTGAAG 2 cut(s) 216, 830
AfiI CCNNNNNNNGG 3 cut(s) 542, 599, 742
AgsI TTSAA 5 cut(s) 93, 139, 171, 641, 763
AluBI AGCT 2 cut(s) 189, 752
AluI AGCT 2 cut(s) 189, 752
Alw26I GTCTC 1 cut(s) 822
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 522, 624
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 1 cut(s) 769
AsuHPI GGTGA 3 cut(s) 257, 495, 507
AvaI CYCGRG 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 57, 89
BbsI GAAGAC 1 cut(s) 435
BccI CCATC 3 cut(s) 18, 150, 794
BcoDI GTCTC 1 cut(s) 822
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 649
BfoI RGCGCY 1 cut(s) 770
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 534
BmsI GCATC 3 cut(s) 373, 709, 843
BpiI GAAGAC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 791
Bsa29I ATCGAT 2 cut(s) 154, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 599, 742
Bse118I RCCGGY 1 cut(s) 132
BseCI ATCGAT 2 cut(s) 154, 484
BseGI GGATG 2 cut(s) 29, 724
BseLI CCNNNNNNNGG 3 cut(s) 542, 599, 742
BshVI ATCGAT 2 cut(s) 154, 484
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 542, 599, 742
BsmAI GTCTC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 3 cut(s) 481, 485, 732
BspDI ATCGAT 2 cut(s) 154, 484
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 1 cut(s) 727
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssMI GATC 3 cut(s) 481, 485, 732
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 659
BstEII GGTNACC 1 cut(s) 513
BstF5I GGATG 2 cut(s) 29, 724
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 3 cut(s) 484, 488, 735
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 3 cut(s) 481, 485, 732
BstMWI GCNNNNNNNGC 2 cut(s) 383, 775
BstPI GGTNACC 1 cut(s) 513
BstSFI CTRYAG 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 732
BstYI RGATCY 1 cut(s) 732
Bsu15I ATCGAT 2 cut(s) 154, 484
BsuTUI ATCGAT 2 cut(s) 154, 484
BtsCI GGATG 2 cut(s) 29, 724
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 66, 225
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 769
Cfr10I RCCGGY 1 cut(s) 132
ClaI ATCGAT 2 cut(s) 154, 484
CviAII CATG 2 cut(s) 302, 742
CviJI RGCY 6 cut(s) 132, 161, 189, 263, 654, 752
CviKI_1 RGCY 6 cut(s) 132, 161, 189, 263, 654, 752
DpnI GATC 3 cut(s) 483, 487, 734
DpnII GATC 3 cut(s) 481, 485, 732
DraI TTTAAA 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco57I CTGAAG 2 cut(s) 216, 830
Eco88I CYCGRG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 513
EcoO65I GGTNACC 1 cut(s) 513
FaeI CATG 2 cut(s) 305, 745
FatI CATG 2 cut(s) 301, 741
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 36, 731
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 768
GluI GCNGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 770
HapII CCGG 1 cut(s) 133
HhaI GCGC 1 cut(s) 769
Hin1II CATG 2 cut(s) 305, 745
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HinfI GANTC 3 cut(s) 183, 206, 645
HpaII CCGG 1 cut(s) 133
HphI GGTGA 3 cut(s) 257, 495, 507
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 235, 477
Hpy188III TCNNGA 2 cut(s) 302, 808
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 775
Hsp92II CATG 2 cut(s) 305, 745
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 3 cut(s) 481, 485, 732
LmnI GCTCC 1 cut(s) 500
LpnPI CCDG 4 cut(s) 146, 177, 531, 821
LweI GCATC 3 cut(s) 373, 709, 843
MaeI CTAG 1 cut(s) 509
MaeIII GTNAC 1 cut(s) 513
MalI GATC 3 cut(s) 483, 487, 734
MboI GATC 3 cut(s) 481, 485, 732
MboII GAAGA 9 cut(s) 77, 260, 419, 440, 558, 593, 676, 758, 823
MflI RGATCY 1 cut(s) 732
MluCI AATT 6 cut(s) 88, 121, 280, 522, 624, 835
MlyI GAGTC 2 cut(s) 200, 654
MmeI TCCRAC 2 cut(s) 328, 382
MnlI CCTC 5 cut(s) 213, 304, 516, 523, 603
MroXI GAANNNNTTC 1 cut(s) 753
MseI TTAA 3 cut(s) 87, 147, 618
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 383, 775
NdeII GATC 3 cut(s) 481, 485, 732
NlaIII CATG 2 cut(s) 305, 745
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 513
PagI TCATGA 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 200, 653
PpsI GAGTC 2 cut(s) 200, 653
PspEI GGTNACC 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 534
PsuI RGATCY 1 cut(s) 732
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 3 cut(s) 87, 147, 618
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 481, 485, 732
SchI GAGTC 2 cut(s) 200, 654
SetI ASST 9 cut(s) 116, 191, 224, 258, 400, 508, 520, 534, 754
SfaNI GCATC 3 cut(s) 373, 709, 843
SfcI CTRYAG 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 6 cut(s) 88, 121, 280, 522, 624, 835
SspMI CTAG 1 cut(s) 509
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 4 cut(s) 154, 435, 484, 629
TasI AATT 6 cut(s) 88, 121, 280, 522, 624, 835
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 3 cut(s) 87, 147, 618
Tru9I TTAA 3 cut(s) 87, 147, 618
TscAI CASTG 2 cut(s) 66, 232
TseFI GTSAC 1 cut(s) 513
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 3 cut(s) 252, 290, 594
TspRI CASTG 2 cut(s) 66, 232
XapI RAATTY 2 cut(s) 522, 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.