Rroxscaffold_6G00411840
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000329
Physical Location & Seq
Reverse (-)
34461257 .. 34461847
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411840.1

Sequence Viewer

Length: 483 bp
ATGGAAGAAAGAATACTTCATGTTCTTAATGCAAAACTTGGGTGTCACAAGACCTACAAAAACTACCAAAGCAGGCTTAGATGGTTTAAAGGTCGATGGAACTCTTACTATACCCTTATGCGTTTTAGCTCTGGTTTTGGATTCGATTCAACTACAAAGAGGTTTACTGCTTCTAATGAAGTATGGCAGGAATACCTTAAGGCTCACCCAAAGGACAACGACTTGCGCTATGGGACATTTGATGATTATGAGGACTTGGAAATTGCTATTGGGAATGGTGTAGCGGTTGGGAAAAACTCGGTCGGGTTGGGTAGTGTTACTGATGCAAGAACATTAGTTGTTGGTGAAGGTAGAGAGGCATGCATAGAAGACTTTGATTATGATATAGATTGTGAAGCATTTGTTGGACCAAATCAAAATAATCCATCAACTCATTTGGCATCACCCCTCCAACCCCCTGAAATTTTGGAGGTTCCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

160

Amino Acids

18.22

Weight (kDa)

5.37

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 4 - 65 8.9e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 462
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 150
AjuI GAANNNNNNNTTGG 4 cut(s) 252, 284, 387, 419
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
ApoI RAATTY 1 cut(s) 462
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 197, 356, 435
AvaII GGWCC 1 cut(s) 407
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 375
BccI CCATC 3 cut(s) 75, 90, 433
BfrI CTTAAG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 474
BmsI GCATC 2 cut(s) 313, 449
BpiI GAAGAC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 247
BspACI CCGC 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 474
BspTI CTTAAG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 476
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 74, 361
BstDEI CTNAG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 228
BstMCI CGRYCG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 74, 361
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 407
CviAII CATG 2 cut(s) 20, 360
CviJI RGCY 3 cut(s) 76, 129, 203
CviKI_1 RGCY 3 cut(s) 76, 129, 203
DdeI CTNAG 1 cut(s) 77
DraI TTTAAA 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 407
EcoT22I ATGCAT 1 cut(s) 365
FaeI CATG 2 cut(s) 23, 363
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 19, 359
GlaI GCGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 23, 363
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 2 cut(s) 141, 146
HphI GGTGA 3 cut(s) 197, 356, 435
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 477
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 341
HpyCH4V TGCA 3 cut(s) 32, 326, 363
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 2 cut(s) 23, 363
HspAI GCGC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 58, 117, 173, 471
LweI GCATC 2 cut(s) 313, 449
MaeIII GTNAC 2 cut(s) 44, 316
MboII GAAGA 2 cut(s) 17, 380
MluCI AATT 2 cut(s) 261, 462
MmeI TCCRAC 2 cut(s) 385, 475
MnlI CCTC 6 cut(s) 153, 244, 349, 458, 463, 471
Mph1103I ATGCAT 1 cut(s) 365
MseI TTAA 3 cut(s) 27, 87, 198
MspCI CTTAAG 1 cut(s) 197
NlaIII CATG 2 cut(s) 23, 363
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 363
PaeI GCATGC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 141, 146
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 1 cut(s) 407
SaqAI TTAA 3 cut(s) 27, 87, 198
Sau96I GGNCC 1 cut(s) 407
SetI ASST 8 cut(s) 56, 94, 131, 164, 198, 352, 474, 482
SfaNI GCATC 2 cut(s) 313, 449
SinI GGWCC 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 363
Sse9I AATT 2 cut(s) 261, 462
SsiI CCGC 1 cut(s) 284
TaqI TCGA 2 cut(s) 94, 144
TaqII GACCGA 1 cut(s) 289
TasI AATT 2 cut(s) 261, 462
TfiI GAWTC 2 cut(s) 141, 146
Tru1I TTAA 3 cut(s) 27, 87, 198
Tru9I TTAA 3 cut(s) 27, 87, 198
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 8, 192
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.