Rmu_sc0008256.1_g000001
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008256.1
OG0000329
Physical Location & Seq
Reverse (-)
1172 .. 6108
4937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008256.1_g000001.1.cds

Sequence Viewer

Length: 936 bp
atggtggtgttgttcaaaacgacgatggaggaaatgctcgcgccgcctgagctcagctccacgcattcctctgcaatggtggctactgcaacaatgcttggccttgaaaggggactgtcggattcaatatttggcttgactgttgtttatgcaggcattgtgatttatgatgcccagatgggagattcacaagggaatggtaaaagaaaggattacaaaacttggaacactgaagaaagcaacgttttgcttcaacttatggttgaaggcgccaaacttggatttcgtgatattaatggtgtgataagcaaacaaacagtagaggcgaagctacttcctaaacttaaggaaaaacttgaaacttttccagactatgaggacttgaaaattgcagttggaaatggaactgcaactggaatgggctcaatcagtctaggtgatgatacagatgcaacaacatttggagcggaggaaaatgaatcttggggaattggtggcatagatggattagtttttgatagaaatactaacatgttcgtacaaaatgaaaatgagtcatcacaacaaccttcccaaggtaccagtatagatgttccagctccaccacatagcaggactcaaggaaaacggagtagaactgactatgaaaataatagtggctcaaaaggggctactggtcaggctgaggttctagaaaacttatcaagtggcattggtaaaattgtcacaagttttgataaaatttgtggcttaatggagaagagagaatcaagagagagtgaccttttggatgctatgaaggagactccaggattaactgatgaagcttgctttatggctcttgatttgcttaatactaaagcaaagcaagatttcttcttgaagatgactcctgaacagcgacttaattggatcacctataaacaaatgcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

34.01

Weight (kDa)

4.73

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 2 cut(s) 269, 578
AccBSI CCGCTC 1 cut(s) 467
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 44, 467
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 920
AcsI RAATTY 1 cut(s) 741
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 540, 580
AfiI CCNNNNNNNGG 2 cut(s) 109, 575
AflII CTTAAG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 8 cut(s) 16, 107, 126, 254, 266, 359, 385, 883
AjnI CCWGG 1 cut(s) 808
AluBI AGCT 5 cut(s) 52, 57, 331, 599, 827
AluI AGCT 5 cut(s) 52, 57, 331, 599, 827
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 1 cut(s) 920
AoxI GGCC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 741
AseI ATTAAT 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 363
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 2 cut(s) 43, 272
AsuHPI GGTGA 2 cut(s) 449, 907
BanI GGYRCC 2 cut(s) 269, 578
BanII GRGCYC 2 cut(s) 54, 425
Bbv12I GWGCWC 1 cut(s) 54
BbvCI CCTCAGC 1 cut(s) 684
BccI CCATC 3 cut(s) 19, 172, 497
BciT130I CCWGG 1 cut(s) 810
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 2 cut(s) 434, 692
BfoI RGCGCY 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 44
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 810
BmiI GGNNCC 2 cut(s) 271, 580
BmrFI CCNGG 1 cut(s) 810
BmsI GCATC 3 cut(s) 160, 439, 781
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 2 cut(s) 48, 684
Bpu1102I GCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 603
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 574
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 575
Bse1I ACTGG 3 cut(s) 418, 582, 679
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 1 cut(s) 796
BseLI CCNNNNNNNGG 2 cut(s) 109, 575
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 3 cut(s) 39, 67, 675
BseNI ACTGG 3 cut(s) 418, 582, 679
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 2 cut(s) 269, 578
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 109, 575
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 54, 425
Bsp143I GATC 1 cut(s) 912
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 2 cut(s) 44, 467
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 3 cut(s) 40, 66, 676
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 271, 580
BspPI GGATC 1 cut(s) 920
BspT107I GGYRCC 2 cut(s) 269, 578
BspTI CTTAAG 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 3 cut(s) 418, 582, 679
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 1 cut(s) 912
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 3 cut(s) 117, 142, 319
Bst6I CTCTTC 1 cut(s) 755
BstACI GRCGYC 1 cut(s) 270
BstAFI CTTAAG 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 39, 154, 829
BstDEI CTNAG 3 cut(s) 48, 53, 684
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 796
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 43, 272
BstKTI GATC 1 cut(s) 915
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 1 cut(s) 912
BstMWI GCNNNNNNNGC 3 cut(s) 43, 49, 80
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 808
BstUI CGCG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 796
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 39, 154, 829
CfoI GCGC 2 cut(s) 43, 272
Csp6I GTAC 2 cut(s) 539, 579
CviAII CATG 1 cut(s) 532
CviQI GTAC 2 cut(s) 539, 579
DdeI CTNAG 3 cut(s) 48, 53, 684
DinI GGCGCC 1 cut(s) 271
DpnI GATC 1 cut(s) 914
DpnII GATC 1 cut(s) 912
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 54, 425
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoRII CCWGG 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 574
EcoT38I GRGCYC 2 cut(s) 54, 425
EgeI GGCGCC 1 cut(s) 271
EheI GGCGCC 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 1 cut(s) 535
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 803
FriOI GRGCYC 2 cut(s) 54, 425
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 2 cut(s) 434, 692
GlaI GCGC 2 cut(s) 42, 271
GluI GCNGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 1 cut(s) 102
HhaI GCGC 2 cut(s) 43, 272
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 1 cut(s) 535
Hin6I GCGC 2 cut(s) 41, 270
HinP1I GCGC 2 cut(s) 41, 270
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 8 cut(s) 122, 185, 479, 554, 616, 767, 805, 889
HphI GGTGA 2 cut(s) 449, 907
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 7 cut(s) 287, 368, 692, 771, 842, 880, 893
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 260, 579, 793
HpyCH4III ACNGT 3 cut(s) 117, 142, 319
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 7 cut(s) 74, 89, 152, 392, 410, 452, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 49, 80
HpyF3I CTNAG 3 cut(s) 48, 53, 684
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 1 cut(s) 535
HspAI GCGC 2 cut(s) 41, 270
KasI GGCGCC 1 cut(s) 269
KpnI GGTACC 1 cut(s) 582
Kzo9I GATC 1 cut(s) 912
LmnI GCTCC 3 cut(s) 62, 464, 604
LweI GCATC 3 cut(s) 160, 439, 781
MaeI CTAG 2 cut(s) 434, 692
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 724, 779
MalI GATC 1 cut(s) 914
MbiI CCGCTC 1 cut(s) 467
MboI GATC 1 cut(s) 912
MboII GAAGA 4 cut(s) 245, 772, 868, 895
MhlI GDGCHC 2 cut(s) 54, 425
MluCI AATT 5 cut(s) 387, 489, 720, 741, 907
Mly113I GGCGCC 1 cut(s) 270
MlyI GAGTC 4 cut(s) 563, 610, 799, 883
MmeI TCCRAC 2 cut(s) 99, 376
MnlI CCTC 6 cut(s) 22, 79, 316, 370, 463, 679
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 6 cut(s) 294, 345, 752, 815, 852, 906
MspCI CTTAAG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 810
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 43, 49, 80
NarI GGCGCC 1 cut(s) 270
NdeII GATC 1 cut(s) 912
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 2 cut(s) 271, 580
NmuCI GTSAC 2 cut(s) 724, 779
NspI RCATGY 1 cut(s) 535
PciI ACATGT 1 cut(s) 531
PctI GAATGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 4 cut(s) 122, 185, 479, 767
PfoI TCCNGGA 1 cut(s) 808
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 4 cut(s) 562, 610, 799, 883
PluTI GGCGCC 1 cut(s) 273
PpsI GAGTC 4 cut(s) 562, 610, 799, 883
PscI ACATGT 1 cut(s) 531
PshBI ATTAAT 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 2 cut(s) 271, 580
RsaI GTAC 2 cut(s) 540, 580
RsaNI GTAC 2 cut(s) 539, 579
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 6 cut(s) 294, 345, 752, 815, 852, 906
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 912
SchI GAGTC 4 cut(s) 563, 610, 799, 883
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 2 cut(s) 54, 425
SfaNI GCATC 3 cut(s) 160, 439, 781
SfoI GGCGCC 1 cut(s) 271
SmlI CTYRAG 2 cut(s) 344, 618
SmoI CTYRAG 2 cut(s) 344, 618
Sse9I AATT 5 cut(s) 387, 489, 720, 741, 907
SsiI CCGC 2 cut(s) 44, 467
SspDI GGCGCC 1 cut(s) 269
SspI AATATT 1 cut(s) 129
SspMI CTAG 2 cut(s) 434, 692
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 808
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 3 cut(s) 117, 142, 319
TaiI ACGT 1 cut(s) 246
TasI AATT 5 cut(s) 387, 489, 720, 741, 907
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 4 cut(s) 122, 185, 479, 767
Tru1I TTAA 6 cut(s) 294, 345, 752, 815, 852, 906
Tru9I TTAA 6 cut(s) 294, 345, 752, 815, 852, 906
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 724, 779
Tsp45I GTSAC 2 cut(s) 724, 779
TspDTI ATGAA 5 cut(s) 492, 561, 660, 812, 837
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 1 cut(s) 235
Vha464I CTTAAG 1 cut(s) 344
VspI ATTAAT 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 1 cut(s) 741
XbaI TCTAGA 1 cut(s) 691
XceI RCATGY 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 2 cut(s) 434, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.