Rroxscaffold_6G00405620
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000329
Physical Location & Seq
Reverse (-)
28073862 .. 28074817
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405620.1

Sequence Viewer

Length: 858 bp
ATGGGAGATTCACAAGGGAATGGTAAAAGAAAGGATTACAAAACTTGGAACACCGAAGAAAGCAACGTTTTGCTTCAACTTATGGTTGAAGGCGCCAAACTTGGATTTCGTGATATTAATGGTGTGATAAGCAAACAAACAGTAGAGGCGAAGCTACTTCCTAAACTTAAGGAAAAACTTGGTTATGAAATAACTTTTAGTCATTACCAAAGCAGAGTGAAATGGTTTAAGAAACAATACACCAATTACTCTCGGCTTATGCGCCATAGTTCTCGGATCCGGTGGGATCCCATCACAAAAAGATTCACTGCTGATGATGAAGTATGGGTAGATTATTTAAAGTCACATCCAACGCATGGGCACTTTCGGTCAAAAACTTTTCCAAACTATGAGGACTTGAAAATTGCAGTTGGAAATGGAACTACATCTGGAATGGGCTCAATCGGTCTAGGTGATGATACAGATGCAACAACATTTGGAGCGGAGGAAAATGAATCTTGGGGAATTGGTGGTATAGATGGATTAGTTTTTGATCGAAATACTAACATGTTCGTACAAAGTGAAAATGAGTCATCACACCAAGAAAACTCGCCATCTCTTTCACAACAACCCTCCCAAGGTACCAGTATAGATGCTCCAGCTCCACCACATAGCAGGACTCAAGGAAAACGGAGTAGAACCGACTATGAAAATAATAGTGGCTCAAAAGGCGCTACTGGTCAGGCCGAGGTTCTAGAAAACTTATCAAGTGGCATTGGTAAAATTGTCACAAGTTTTGATAAAATTTGTGGCTTAATGGAGAAGAGAGAATCAAGAGAGAGTGACCTTTTGGATGCTATGAAGGAGACTCAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

285

Amino Acids

31.89

Weight (kDa)

6.2

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 15 - 112 1.2e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 92, 620
AccB7I CCANNNNNTGG 1 cut(s) 356
AccBSI CCGCTC 1 cut(s) 482
AciI CCGC 1 cut(s) 482
AclI AACGTT 1 cut(s) 66
AclWI GGATC 4 cut(s) 271, 281, 284, 294
AcsI RAATTY 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 2 cut(s) 555, 622
AfiI CCNNNNNNNGG 2 cut(s) 356, 617
AflII CTTAAG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 77, 89, 400
AluBI AGCT 2 cut(s) 154, 641
AluI AGCT 2 cut(s) 154, 641
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 4 cut(s) 271, 281, 284, 294
AoxI GGCC 1 cut(s) 723
ApoI RAATTY 1 cut(s) 783
AseI ATTAAT 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 620
AspLEI GCGC 3 cut(s) 95, 264, 713
AsuHPI GGTGA 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 363
BamHI GGATCC 2 cut(s) 276, 286
BanI GGYRCC 2 cut(s) 92, 620
BanII GRGCYC 1 cut(s) 440
BccI CCATC 3 cut(s) 299, 512, 601
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 2 cut(s) 449, 734
BfoI RGCGCY 2 cut(s) 96, 714
BfrI CTTAAG 1 cut(s) 167
BmiI GGNNCC 4 cut(s) 94, 278, 288, 622
BmsI GCATC 3 cut(s) 454, 622, 823
BpmI CTGGAG 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 616, 726
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 617
Bse1I ACTGG 2 cut(s) 624, 721
BseDI CCNNGG 2 cut(s) 616, 726
BseGI GGATG 2 cut(s) 346, 838
BseLI CCNNNNNNNGG 2 cut(s) 356, 617
BseNI ACTGG 2 cut(s) 624, 721
BseSI GKGCMC 1 cut(s) 363
BshFI GGCC 1 cut(s) 725
BshNI GGYRCC 2 cut(s) 92, 620
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 356, 617
BsmAI GTCTC 1 cut(s) 839
BsnI GGCC 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 363, 440
Bsp143I GATC 3 cut(s) 276, 286, 532
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 725
BspLI GGNNCC 4 cut(s) 94, 278, 288, 622
BspPI GGATC 4 cut(s) 271, 281, 284, 294
BspT107I GGYRCC 2 cut(s) 92, 620
BspTI CTTAAG 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 482
BsrI ACTGG 2 cut(s) 624, 721
BssECI CCNNGG 2 cut(s) 616, 726
BssMI GATC 3 cut(s) 276, 286, 532
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 849
BstF5I GGATG 2 cut(s) 346, 838
BstH2I RGCGCY 2 cut(s) 96, 714
BstHHI GCGC 3 cut(s) 95, 264, 713
BstKTI GATC 3 cut(s) 279, 289, 535
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 3 cut(s) 276, 286, 532
BstMWI GCNNNNNNNGC 1 cut(s) 708
BstNSI RCATGY 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 276, 286
BstYI RGATCY 2 cut(s) 276, 286
BsuRI GGCC 1 cut(s) 725
BtsCI GGATG 2 cut(s) 346, 838
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
CfoI GCGC 3 cut(s) 95, 264, 713
Csp6I GTAC 2 cut(s) 554, 621
CviAII CATG 2 cut(s) 356, 547
CviJI RGCY 7 cut(s) 154, 256, 438, 641, 702, 725, 792
CviKI_1 RGCY 7 cut(s) 154, 256, 438, 641, 702, 725, 792
CviQI GTAC 2 cut(s) 554, 621
DdeI CTNAG 1 cut(s) 849
DinI GGCGCC 1 cut(s) 94
DpnI GATC 3 cut(s) 278, 288, 534
DpnII GATC 3 cut(s) 276, 286, 532
DraI TTTAAA 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 440
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 359, 550
FatI CATG 2 cut(s) 355, 546
FokI GGATG 2 cut(s) 333, 845
FriOI GRGCYC 1 cut(s) 440
FspBI CTAG 2 cut(s) 449, 734
GlaI GCGC 3 cut(s) 94, 263, 712
GsuI CTGGAG 1 cut(s) 621
HaeII RGCGCY 2 cut(s) 96, 714
HaeIII GGCC 1 cut(s) 725
HapII CCGG 1 cut(s) 280
HhaI GCGC 3 cut(s) 95, 264, 713
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 359, 550
Hin6I GCGC 3 cut(s) 93, 262, 711
HinP1I GCGC 3 cut(s) 93, 262, 711
HinfI GANTC 7 cut(s) 8, 303, 494, 569, 658, 809, 847
HpaII CCGG 1 cut(s) 280
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 5 cut(s) 110, 429, 734, 813, 851
HpyAV CCTTC 2 cut(s) 83, 835
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 407, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 708
HpyF3I CTNAG 1 cut(s) 849
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 359, 550
HspAI GCGC 3 cut(s) 93, 262, 711
KasI GGCGCC 1 cut(s) 92
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 3 cut(s) 276, 286, 532
LmnI GCTCC 3 cut(s) 479, 640, 646
LpnPI CCDG 8 cut(s) 293, 414, 637, 640, 651, 702, 707, 836
LweI GCATC 3 cut(s) 454, 622, 823
MaeI CTAG 2 cut(s) 449, 734
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 342, 766, 821
MalI GATC 3 cut(s) 278, 288, 534
MbiI CCGCTC 1 cut(s) 482
MboI GATC 3 cut(s) 276, 286, 532
MboII GAAGA 2 cut(s) 68, 814
MflI RGATCY 2 cut(s) 276, 286
MhlI GDGCHC 2 cut(s) 363, 440
MluCI AATT 5 cut(s) 244, 402, 504, 762, 783
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 3 cut(s) 578, 652, 841
MmeI TCCRAC 2 cut(s) 374, 391
MnlI CCTC 5 cut(s) 139, 385, 478, 622, 721
MseI TTAA 6 cut(s) 117, 168, 228, 338, 794, 856
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 708
NarI GGCGCC 1 cut(s) 93
NdeII GATC 3 cut(s) 276, 286, 532
NlaIII CATG 2 cut(s) 359, 550
NlaIV GGNNCC 4 cut(s) 94, 278, 288, 622
NmeAIII GCCGAG 2 cut(s) 232, 751
NmuCI GTSAC 3 cut(s) 342, 766, 821
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PfeI GAWTC 4 cut(s) 8, 303, 494, 809
PflMI CCANNNNNTGG 1 cut(s) 356
PleI GAGTC 3 cut(s) 577, 652, 841
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 3 cut(s) 577, 652, 841
PscI ACATGT 1 cut(s) 546
PshBI ATTAAT 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 66
PspN4I GGNNCC 4 cut(s) 94, 278, 288, 622
PsuI RGATCY 2 cut(s) 276, 286
RsaI GTAC 2 cut(s) 555, 622
RsaNI GTAC 2 cut(s) 554, 621
SaqAI TTAA 6 cut(s) 117, 168, 228, 338, 794, 856
Sau3AI GATC 3 cut(s) 276, 286, 532
SchI GAGTC 3 cut(s) 578, 652, 841
SduI GDGCHC 2 cut(s) 363, 440
SetI ASST 7 cut(s) 69, 156, 454, 622, 643, 732, 828
SfaNI GCATC 3 cut(s) 454, 622, 823
SfoI GGCGCC 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 167, 660
SmoI CTYRAG 2 cut(s) 167, 660
Sse9I AATT 5 cut(s) 244, 402, 504, 762, 783
SsiI CCGC 1 cut(s) 482
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 2 cut(s) 449, 734
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 535
TaqII GACCGA 2 cut(s) 357, 434
TasI AATT 5 cut(s) 244, 402, 504, 762, 783
TfiI GAWTC 4 cut(s) 8, 303, 494, 809
Tru1I TTAA 6 cut(s) 117, 168, 228, 338, 794, 856
Tru9I TTAA 6 cut(s) 117, 168, 228, 338, 794, 856
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 3 cut(s) 342, 766, 821
Tsp45I GTSAC 3 cut(s) 342, 766, 821
TspDTI ATGAA 5 cut(s) 201, 333, 507, 702, 854
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 356
Vha464I CTTAAG 1 cut(s) 167
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 783
XbaI TCTAGA 1 cut(s) 733
XceI RCATGY 1 cut(s) 550
XspI CTAG 2 cut(s) 449, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.