RLG00000021700
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000329
Physical Location & Seq
Reverse (-)
77355817 .. 77356900
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021700

Sequence Viewer

Length: 1002 bp
ATGGGACCTCCGCAACAAGGAAAGGGAAAAGGAGCAAAAGAAGAGGGAAAGGATGTGGGAAATTATGACAAATGGAGTAATGAAGAGAGCAATGAGTTACTGCAAGTCTTGGTTGACGCTGCCAAACGTGGTTGGCGCGATCCTCAAAGTGGTTTGATAGACAAAAAAATAGTTGAGAGCAAAATACTTCCATCTTTTAATAAAAAACTAGGGTGTGAAAAGACTTATAAACATTACACCCACCGGGTGAAATGGTTTAAGAAACAATACTCTATGTATTCTGAGCTTATGCGTCATAGCTCCGGCTTTGGGTGGGACCCCATCATGAAGAGAATCACTGCTAGTGATGAAGTATGGGAAGATTACTTCAAGGCACACCCAAAACATAGAAGCCTTCGCAACCAGACTTTCATAGACTATGAGGATTTGAAAATTGCAGTGGGAAATGGAATTGCAACAGGAAAGTTTTCAATTAGCCTGGGCGATGATACTGATGCAACCACATACATGGTTGAGGAAAGTGAAAGTGATGCTTTGAATGACTTGGTCTATAACAAAAATGCTGATGCATTTATACCAGCAGGGGATGAATCATCATTCCAAGGTTATTCACCACCGCCATCATCCTTACCTTTTGAGGGCACGAATGTGGGAGCTCCTAATAATGATGTGGAAAAGAATACTGGAAGTAGTGCAACTAGAAAACGCAACAGGAATGAGTTTGAGAGAAATAATAGCTTGACTGATGATATTTCTGAAGCTGATGTTAGGAAAAGCATTGGTTCTATTGCCACCAATTTCAACAAAATGTATAGCCTAATGGAGAAAAGAGAATCAAGGGATACGGAATGTTGGAATGCTATTAAGGACACTCCAGGCTTGAATGATGAAGCACGTTACTTGGCTCTTGAGTTGCTCAATACTAAAGCATTTAAGGATGTTTTTCTGGAAATGACCCCGGAGGAGCGATTTAAGTGGATTGGATTCAAGACAATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

334

Amino Acids

37.9

Weight (kDa)

5.74

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 24 - 122 7.7e-18 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 284 - 330 3.1e-20 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00551 FvH4_2g33311 FvH4_4g17330 FvH4_5g24690 FvH4_6g24700
rosa_chinensis RchiOBHm_Chr3g0476481 RchiOBHm_Chr3g0497311 RchiOBHm_Chr4g0395221 RchiOBHm_Chr4g0409291 RchiOBHm_Chr5g0019361 RchiOBHm_Chr5g0052631 RchiOBHm_Chr6g0281401 RchiOBHm_Chr6g0297421 RchiOBHm_Chr7g0220391 RchiOBHm_Chr7g0237991
rosa_laevigata RLG00000000925 RLG00000001165 RLG00000001356 RLG00000001477 RLG00000002205 RLG00000002538 RLG00000003099 RLG00000003549 RLG00000003988 RLG00000008622 RLG00000008839 RLG00000010965 RLG00000011510 RLG00000012037 RLG00000013215 RLG00000013450 RLG00000015007 RLG00000017503 RLG00000019169 RLG00000019298 RLG00000020522 RLG00000021241 RLG00000021700 RLG00000022934 RLG00000022935 RLG00000023200 RLG00000026869 RLG00000028902 RLG00000030978 RLG00000032525 RLG00000033761 RLG00000034460 RLG00000034510 RLG00000034626 RLG00000035597 RLG00000035815 RLG00000036785 RLG00000037002
rosa_multiflora Rmu_sc0000147.1_g000040 Rmu_sc0000429.1_g000095 Rmu_sc0002357.1_g000041 Rmu_sc0003113.1_g000004 Rmu_sc0003426.1_g000006 Rmu_sc0004453.1_g000001 Rmu_sc0004455.1_g000005 Rmu_sc0004511.1_g000002 Rmu_sc0005782.1_g000003 Rmu_sc0007848.1_g000030 Rmu_sc0007863.1_g000005 Rmu_sc0008256.1_g000001 Rmu_sc0011325.1_g000005 Rmu_sc0012624.1_g000004 Rmu_sc0017974.1_g000002 Rmu_sc0018061.1_g000001 Rmu_ssc0000366.1_g000011 Rmu_ssc0000472.1_g000025
rosa_roxburghii Rroxscaffold_1G00010100 Rroxscaffold_1G00031270 Rroxscaffold_2G00108870 Rroxscaffold_2G00131670 Rroxscaffold_2G00142200 Rroxscaffold_3G00233060 Rroxscaffold_3G00233710 Rroxscaffold_4G00300200 Rroxscaffold_4G00318490 Rroxscaffold_4G00319390 Rroxscaffold_5G00340520 Rroxscaffold_5G00349510 Rroxscaffold_5G00374060 Rroxscaffold_6G00393340 Rroxscaffold_6G00405620 Rroxscaffold_6G00411840 Rroxscaffold_7G00187660
rosa_rugosa Rorug01G0090600 Rorug01G0091800 Rorug01G0168700 Rorug01G0192800 Rorug02G0326300 Rorug02G0353900 Rorug02G0354000 Rorug02G0408500 Rorug03G0151400 Rorug05G0150800 Rorug05G0150900 Rorug05G0407400 Rorug06G0111000
rosa_samantha Rh3DG370900
rosa_wichuraiana Rw1G001900 Rw2G022570 Rw3G020950 Rw3G028020 Rw4G009960 Rw5G032340 Rw6G003630 Rw6G018060 Rw7G024540 Rw7G035380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 11, 617
AclWI GGATC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 777
AdeI CACNNNGTG 1 cut(s) 247
AfiI CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
AgsI TTSAA 7 cut(s) 370, 430, 471, 538, 802, 883, 988
AjnI CCWGG 2 cut(s) 477, 874
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 5 cut(s) 286, 300, 656, 738, 761
AluI AGCT 5 cut(s) 286, 300, 656, 738, 761
Alw21I GWGCWC 1 cut(s) 658
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 466
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 5, 316
AsuC2I CCSGG 2 cut(s) 245, 959
AsuHPI GGTGA 2 cut(s) 259, 603
AvaII GGWCC 2 cut(s) 5, 316
BaeGI GKGCMC 1 cut(s) 644
BanII GRGCYC 1 cut(s) 658
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 1 cut(s) 106
BccI CCATC 3 cut(s) 199, 329, 628
BciT130I CCWGG 2 cut(s) 479, 876
BciVI GTATCC 1 cut(s) 835
BcnI CCSGG 2 cut(s) 245, 959
BfaI CTAG 3 cut(s) 209, 342, 699
BfuI GTATCC 1 cut(s) 835
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 4 cut(s) 245, 479, 876, 959
Bme18I GGWCC 2 cut(s) 5, 316
BmgT120I GGNCC 2 cut(s) 5, 316
BmiI GGNNCC 3 cut(s) 6, 317, 318
BmrFI CCNGG 4 cut(s) 245, 479, 876, 959
BmsI GCATC 3 cut(s) 484, 520, 556
BpmI CTGGAG 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 929
BpuMI CCSGG 2 cut(s) 245, 959
BsaJI CCNNGG 3 cut(s) 478, 601, 957
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
Bse1I ACTGG 1 cut(s) 688
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 479, 876
BseDI CCNNGG 3 cut(s) 478, 601, 957
BseGI GGATG 4 cut(s) 58, 592, 623, 943
BseLI CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 1 cut(s) 977
BseSI GKGCMC 1 cut(s) 644
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 3 cut(s) 244, 303, 959
BslFI GGGAC 2 cut(s) 18, 329
BslI CCNNNNNNNGG 4 cut(s) 17, 149, 309, 638
BsmFI GGGAC 2 cut(s) 18, 329
BsmI GAATGC 1 cut(s) 862
Bsp1286I GDGCHC 2 cut(s) 644, 658
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 11, 617
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 6, 317, 318
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 688
BssECI CCNNGG 3 cut(s) 478, 601, 957
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 479, 876
Bst6I CTCTTC 3 cut(s) 36, 78, 323
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 58, 592, 623, 943
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 2 cut(s) 479, 876
BstSCI CCNGG 4 cut(s) 243, 477, 874, 957
BstSLI GKGCMC 1 cut(s) 644
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 508
BsuI GTATCC 1 cut(s) 835
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 4 cut(s) 58, 592, 623, 943
BtsI GCAGTG 2 cut(s) 336, 444
BtsIMutI CAGTG 2 cut(s) 336, 444
CciI TCATGA 1 cut(s) 324
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 5, 316
CseI GACGC 2 cut(s) 125, 281
CviAII CATG 2 cut(s) 325, 508
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 247
Eam1104I CTCTTC 3 cut(s) 36, 78, 323
EarI CTCTTC 3 cut(s) 36, 78, 323
Ecl136II GAGCTC 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 658
Eco47I GGWCC 2 cut(s) 5, 316
Eco53kI GAGCTC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 777
EcoICRI GAGCTC 1 cut(s) 656
EcoO109I RGGNCCY 2 cut(s) 5, 316
EcoRII CCWGG 2 cut(s) 477, 874
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 2 cut(s) 328, 511
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 2 cut(s) 18, 329
FatI CATG 2 cut(s) 324, 507
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 4 cut(s) 65, 599, 610, 950
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 209, 342, 699
GlaI GCGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 858
HapII CCGG 3 cut(s) 244, 303, 959
HgaI GACGC 2 cut(s) 125, 281
HhaI GCGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 328, 511
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 333, 590, 833, 984
HpaII CCGG 3 cut(s) 244, 303, 959
HphI GGTGA 2 cut(s) 259, 603
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 283, 757
Hpy188III TCNNGA 4 cut(s) 325, 908, 947, 988
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 404
HpyCH4IV ACGT 2 cut(s) 127, 895
HpyCH4V TGCA 7 cut(s) 103, 437, 455, 497, 569, 695, 997
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 2 cut(s) 127, 895
Hsp92II CATG 2 cut(s) 328, 511
HspAI GCGC 1 cut(s) 136
KflI GGGWCCC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 5 cut(s) 32, 305, 653, 661, 964
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 484, 520, 556
MaeI CTAG 3 cut(s) 209, 342, 699
MaeII ACGT 2 cut(s) 127, 895
MaeIII GTNAC 2 cut(s) 96, 896
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 53, 95, 340, 371
MhlI GDGCHC 2 cut(s) 644, 658
MluCI AATT 5 cut(s) 61, 432, 450, 471, 796
MmeI TCCRAC 1 cut(s) 833
MnlI CCTC 7 cut(s) 18, 37, 153, 415, 508, 631, 955
Mph1103I ATGCAT 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 466
MseI TTAA 5 cut(s) 198, 258, 864, 933, 972
MslI CAYNNNNRTG 2 cut(s) 506, 647
MspI CCGG 3 cut(s) 244, 303, 959
MspR9I CCNGG 4 cut(s) 245, 479, 876, 959
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 2 cut(s) 479, 876
MvnI CGCG 1 cut(s) 138
NciI CCSGG 2 cut(s) 245, 959
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 328, 511
NlaIV GGNNCC 3 cut(s) 6, 317, 318
NsiI ATGCAT 1 cut(s) 571
OliI CACNNNNGTG 1 cut(s) 647
PagI TCATGA 1 cut(s) 324
PctI GAATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 466
PfeI GAWTC 4 cut(s) 333, 590, 833, 984
PflFI GACNNNGTC 1 cut(s) 545
PkrI GCNGC 1 cut(s) 121
PpuMI RGGWCCY 2 cut(s) 5, 316
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 658
Psp5II RGGWCCY 2 cut(s) 5, 316
Psp6I CCWGG 2 cut(s) 477, 874
PspGI CCWGG 2 cut(s) 477, 874
PspN4I GGNNCC 3 cut(s) 6, 317, 318
PspPI GGNCC 2 cut(s) 5, 316
PspPPI RGGWCCY 2 cut(s) 5, 316
PsyI GACNNNGTC 1 cut(s) 545
RseI CAYNNNNRTG 2 cut(s) 506, 647
SacI GAGCTC 1 cut(s) 658
SaqAI TTAA 5 cut(s) 198, 258, 864, 933, 972
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 2 cut(s) 5, 316
ScrFI CCNGG 4 cut(s) 245, 479, 876, 959
SduI GDGCHC 2 cut(s) 644, 658
SfaNI GCATC 3 cut(s) 484, 520, 556
SinI GGWCC 2 cut(s) 5, 316
SmiMI CAYNNNNRTG 2 cut(s) 506, 647
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 5 cut(s) 61, 432, 450, 471, 796
SsiI CCGC 2 cut(s) 11, 617
SspMI CTAG 3 cut(s) 209, 342, 699
SstI GAGCTC 1 cut(s) 658
StyD4I CCNGG 4 cut(s) 243, 477, 874, 957
StyI CCWWGG 1 cut(s) 601
TaiI ACGT 2 cut(s) 130, 898
TasI AATT 5 cut(s) 61, 432, 450, 471, 796
TfiI GAWTC 4 cut(s) 333, 590, 833, 984
Tru1I TTAA 5 cut(s) 198, 258, 864, 933, 972
Tru9I TTAA 5 cut(s) 198, 258, 864, 933, 972
TscAI CASTG 2 cut(s) 343, 444
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 6 cut(s) 96, 341, 363, 400, 603, 903
TspGWI ACGGA 1 cut(s) 860
TspRI CASTG 2 cut(s) 343, 444
Tth111I GACNNNGTC 1 cut(s) 545
VpaK11BI GGWCC 2 cut(s) 5, 316
XmnI GAANNNNTTC 1 cut(s) 466
XspI CTAG 3 cut(s) 209, 342, 699
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.