Prupe.5G043900_v2.0.a1

S-norcoclaurine synthase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016346
Physical Location & Seq
Reverse (-)
4831320 .. 4835703
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G043900.2

Sequence Viewer

Length: 1110 bp
ATGGCAGAAAGAATTTCAATCCTCAGTGTGAGAATGGAGACTGAGGTACTCAGCAGAAAGGACCTGGGTGGTTCTCTCCCAGTTGAGAATGTTCAAGCTCTTGCTTCCAACAACTTGAAGGAAATCCCGCCCCGATACATCCGGCCTGAAATTGAACATGAGGAAGTTTCCATGGAGGACTCGCTTCAAATTCCGGTAGTTGATATGAGCAAGCTAATAGGGGATCCATTAGGCCATGGTGAGGAATTGGCAAAGCTTCACTTGGCTTGTAAGGACTGGGGTTTCTTTCAGTTGATCAATCATGGGGTATCAGAAGAAGTGATTGAGAAAATCAAGAGTGACACAAAGGAGTTCTTCCAGCTGCCATTAGAAGAAAAGAAGGCTTATGCTCAGCTGCCGAATCATATTGAAGGCTATGGCCAAGCCTTCGTTGTTTCTGAAGAGCAAAAACTTGACTGGGGGGACATGCTCTTCCTTCTCTCTCAACCAGTCTCCCTAAGAAATCTTACATTCTGGCCTACCCTTCCCACTTCTTTCAGGGAGACCCTGGATAAGTACTCGGTGGAACTACAGGAAGTGACAAAGTACCTATGGAAGTTAATATGTAAGAACCTGGGGCTCAATTCAGAGAAGCTAGCAAGCATGTTTGAGGATGGAACTCAAGGTCTAAGAATGAATTATTATCCACCTTGTCCGCAGGCTAGCAGGGTTATGGGTCTCACTCCACACTCCGATGCTGTGGGTTTGACTCTACTAATTCAAGTTAATGATGTTCAAGGGTTACAAATCAAGAACAATGGCAAATGGGTACCTATAAAGCCAGTACCCGGTGCATTAATCGTCAACATCGGCGACATCATTGAGATATTGAGTAATGGAGAATATAAGAGCATTGAGCACAGGGCTGTGGTGAACACAGAAAGGGAACGGCTTTCAATTGCAGGATTTCACAGCCCAAATATGATGAGCATGATTGGTCCTCTGCCCGATCTTGTCAAGGAGAAGGCAGCAAACTACAAGGCTATAAGCAATGAGGAGTACATTAGACTTGTTGTAACCAGCAAACTTGACGGCAAACACCTACTCGACCATATGAAATTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.65

Weight (kDa)

5.57

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21360
malus_domestica MD06G1038700.v1.1
prunus_persica Prupe.5G043900_v2.0.a1 Prupe.5G043900_v2.0.a1
pyrus_communis pycom06g03250
rosa_chinensis RchiOBHm_Chr7g0208701
rosa_laevigata RLG00000003198 RLG00000003200
rosa_multiflora Rmu_sc0004103.1_g000007
rosa_roxburghii Rroxscaffold_3G00250300
rosa_rugosa Rorug07G0105500
rosa_samantha Rh7AG240500 Rh7CG255100 Rh7DG246500
rosa_wichuraiana Rw7G020420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 808
AciI CCGC 2 cut(s) 128, 695
AclWI GGATC 2 cut(s) 218, 231
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 12, 189
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 6 cut(s) 48, 557, 587, 810, 825, 1040
AfiI CCNNNNNNNGG 2 cut(s) 241, 827
AjnI CCWGG 3 cut(s) 63, 546, 612
AluBI AGCT 6 cut(s) 98, 214, 256, 361, 394, 634
AluI AGCT 6 cut(s) 98, 214, 256, 361, 394, 634
Alw21I GWGCWC 1 cut(s) 900
Alw26I GTCTC 4 cut(s) 32, 496, 536, 722
AlwI GGATC 2 cut(s) 218, 231
AoxI GGCC 4 cut(s) 143, 232, 418, 515
ApeKI GCWGC 3 cut(s) 361, 394, 1007
ApoI RAATTY 2 cut(s) 12, 189
AseI ATTAAT 1 cut(s) 836
Asp718I GGTACC 1 cut(s) 808
AspS9I GGNCC 2 cut(s) 61, 977
AsuC2I CCSGG 1 cut(s) 828
AsuHPI GGTGA 2 cut(s) 251, 922
AsuNHI GCTAGC 2 cut(s) 634, 701
AvaII GGWCC 2 cut(s) 61, 977
BalI TGGCCA 1 cut(s) 420
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 900
BbvI GCAGC 3 cut(s) 348, 381, 1019
BccI CCATC 1 cut(s) 647
BceAI ACGGC 2 cut(s) 944, 1087
BciT130I CCWGG 3 cut(s) 65, 548, 614
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 828
BcoDI GTCTC 4 cut(s) 32, 496, 536, 722
BfaI CTAG 2 cut(s) 635, 702
BfmI CTRYAG 1 cut(s) 569
BisI GCNGC 3 cut(s) 362, 395, 1008
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 3 cut(s) 363, 396, 1009
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 4 cut(s) 65, 548, 614, 828
Bme18I GGWCC 2 cut(s) 61, 977
BmgT120I GGNCC 2 cut(s) 61, 977
BmiI GGNNCC 2 cut(s) 225, 810
BmrFI CCNGG 4 cut(s) 65, 548, 614, 828
BmrI ACTGGG 3 cut(s) 74, 286, 466
BmsI GCATC 1 cut(s) 724
BmtI GCTAGC 2 cut(s) 638, 705
BmuI ACTGGG 3 cut(s) 74, 286, 466
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 828
BsaI GGTCTC 2 cut(s) 536, 722
BsaJI CCNNGG 5 cut(s) 64, 171, 235, 546, 613
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 827
Bse1I ACTGG 5 cut(s) 80, 281, 461, 488, 821
Bse3DI GCAATG 1 cut(s) 1036
BseBI CCWGG 3 cut(s) 65, 548, 614
BseDI CCNNGG 5 cut(s) 64, 171, 235, 546, 613
BseGI GGATG 2 cut(s) 138, 658
BseLI CCNNNNNNNGG 2 cut(s) 241, 827
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 4 cut(s) 33, 37, 64, 404
BseNI ACTGG 5 cut(s) 80, 281, 461, 488, 821
BseRI GAGGAG 1 cut(s) 1049
BseXI GCAGC 3 cut(s) 348, 381, 1019
BshFI GGCC 4 cut(s) 145, 234, 420, 517
BshNI GGYRCC 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 900
BsiSI CCGG 3 cut(s) 142, 194, 828
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 2 cut(s) 241, 827
BsmAI GTCTC 4 cut(s) 32, 496, 536, 722
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 4 cut(s) 145, 234, 420, 517
Bso31I GGTCTC 2 cut(s) 536, 722
Bsp1286I GDGCHC 2 cut(s) 621, 900
Bsp143I GATC 3 cut(s) 223, 294, 988
Bsp1720I GCTNAGC 1 cut(s) 390
Bsp19I CCATGG 2 cut(s) 171, 235
BspACI CCGC 2 cut(s) 128, 695
BspANI GGCC 4 cut(s) 145, 234, 420, 517
BspCNI CTCAG 4 cut(s) 34, 36, 63, 403
BspLI GGNNCC 2 cut(s) 225, 810
BspOI GCTAGC 2 cut(s) 638, 705
BspPI GGATC 2 cut(s) 218, 231
BspQI GCTCTTC 2 cut(s) 435, 476
BspT107I GGYRCC 1 cut(s) 808
BspTNI GGTCTC 2 cut(s) 536, 722
BsrDI GCAATG 1 cut(s) 1036
BsrI ACTGG 5 cut(s) 80, 281, 461, 488, 821
BssECI CCNNGG 5 cut(s) 64, 171, 235, 546, 613
BssMI GATC 3 cut(s) 223, 294, 988
BssT1I CCWWGG 2 cut(s) 171, 235
Bst2UI CCWGG 3 cut(s) 65, 548, 614
Bst6I CTCTTC 2 cut(s) 435, 476
BstC8I GCNNGC 5 cut(s) 212, 636, 640, 699, 703
BstDEI CTNAG 6 cut(s) 23, 42, 50, 390, 497, 668
BstDSI CCRYGG 2 cut(s) 171, 235
BstF5I GGATG 2 cut(s) 138, 658
BstKTI GATC 3 cut(s) 226, 297, 991
BstMAI GTCTC 4 cut(s) 32, 496, 536, 722
BstMBI GATC 3 cut(s) 223, 294, 988
BstNI CCWGG 3 cut(s) 65, 548, 614
BstNSI RCATGY 2 cut(s) 469, 646
BstSCI CCNGG 4 cut(s) 63, 546, 612, 826
BstSFI CTRYAG 1 cut(s) 569
BstV1I GCAGC 3 cut(s) 348, 381, 1019
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 4 cut(s) 145, 234, 420, 517
BtgI CCRYGG 2 cut(s) 171, 235
BtsCI GGATG 2 cut(s) 138, 658
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 5 cut(s) 212, 636, 640, 699, 703
Cfr13I GGNCC 2 cut(s) 61, 977
Csp6I GTAC 6 cut(s) 47, 556, 586, 809, 824, 1039
CviAII CATG 7 cut(s) 158, 172, 236, 302, 466, 643, 970
CviQI GTAC 6 cut(s) 47, 556, 586, 809, 824, 1039
DdeI CTNAG 6 cut(s) 23, 42, 50, 390, 497, 668
DpnI GATC 3 cut(s) 225, 296, 990
DpnII GATC 3 cut(s) 223, 294, 988
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 435, 476
EarI CTCTTC 2 cut(s) 435, 476
Eco130I CCWWGG 2 cut(s) 171, 235
Eco24I GRGCYC 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 536, 722
Eco47I GGWCC 2 cut(s) 61, 977
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 63, 546, 612
EcoT14I CCWWGG 2 cut(s) 171, 235
EcoT38I GRGCYC 1 cut(s) 621
ErhI CCWWGG 2 cut(s) 171, 235
FaeI CATG 7 cut(s) 161, 175, 239, 305, 469, 646, 973
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 338, 370
FaqI GGGAC 1 cut(s) 476
FatI CATG 7 cut(s) 157, 171, 235, 301, 465, 642, 969
FauI CCCGC 1 cut(s) 135
FauNDI CATATG 1 cut(s) 1092
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 362, 395, 1008
FokI GGATG 2 cut(s) 125, 665
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 3 cut(s) 362, 395, 1008
FspBI CTAG 2 cut(s) 635, 702
GluI GCNGC 3 cut(s) 362, 395, 1008
HaeIII GGCC 4 cut(s) 145, 234, 420, 517
HapII CCGG 3 cut(s) 142, 194, 828
Hin1II CATG 7 cut(s) 161, 175, 239, 305, 469, 646, 973
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 3 cut(s) 179, 400, 748
HpaII CCGG 3 cut(s) 142, 194, 828
HphI GGTGA 2 cut(s) 251, 922
Hpy166II GTNNAC 2 cut(s) 844, 913
Hpy188I TCNGA 4 cut(s) 313, 439, 628, 733
Hpy188III TCNNGA 2 cut(s) 334, 790
Hpy8I GTNNAC 2 cut(s) 844, 913
HpyAV CCTTC 7 cut(s) 112, 373, 404, 436, 485, 533, 997
HpyCH4V TGCA 2 cut(s) 833, 941
HpyF3I CTNAG 6 cut(s) 23, 42, 50, 390, 497, 668
Hsp92II CATG 7 cut(s) 161, 175, 239, 305, 469, 646, 973
KpnI GGTACC 1 cut(s) 812
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 3 cut(s) 223, 294, 988
LguI GCTCTTC 2 cut(s) 435, 476
Lsp1109I GCAGC 3 cut(s) 348, 381, 1019
LweI GCATC 1 cut(s) 724
MaeI CTAG 2 cut(s) 635, 702
MaeIII GTNAC 4 cut(s) 338, 577, 780, 1054
MalI GATC 3 cut(s) 225, 296, 990
MboI GATC 3 cut(s) 223, 294, 988
MboII GAAGA 5 cut(s) 326, 346, 383, 452, 463
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 621, 900
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 9 cut(s) 12, 150, 189, 245, 622, 676, 756, 936, 1097
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 2 cut(s) 173, 742
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 8 cut(s) 32, 37, 154, 169, 235, 643, 990, 1027
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 3 cut(s) 599, 765, 836
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 2 cut(s) 361, 394
MspI CCGG 3 cut(s) 142, 194, 828
MspR9I CCNGG 4 cut(s) 65, 548, 614, 828
MunI CAATTG 1 cut(s) 936
MvaI CCWGG 3 cut(s) 65, 548, 614
NciI CCSGG 1 cut(s) 828
NcoI CCATGG 2 cut(s) 171, 235
NdeI CATATG 1 cut(s) 1092
NdeII GATC 3 cut(s) 223, 294, 988
NheI GCTAGC 2 cut(s) 634, 701
NlaIII CATG 7 cut(s) 161, 175, 239, 305, 469, 646, 973
NlaIV GGNNCC 2 cut(s) 225, 810
NmuCI GTSAC 2 cut(s) 338, 577
NspI RCATGY 2 cut(s) 469, 646
PciSI GCTCTTC 2 cut(s) 435, 476
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 3 cut(s) 363, 396, 1009
PleI GAGTC 2 cut(s) 173, 742
PpsI GAGTC 2 cut(s) 173, 742
PpuMI RGGWCCY 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 3 cut(s) 63, 546, 612
PspGI CCWGG 3 cut(s) 63, 546, 612
PspN4I GGNNCC 2 cut(s) 225, 810
PspPI GGNCC 2 cut(s) 61, 977
PspPPI RGGWCCY 1 cut(s) 61
PsuI RGATCY 1 cut(s) 223
PvuII CAGCTG 2 cut(s) 361, 394
RsaI GTAC 6 cut(s) 48, 557, 587, 810, 825, 1040
RsaNI GTAC 6 cut(s) 47, 556, 586, 809, 824, 1039
RseI CAYNNNNRTG 1 cut(s) 732
SapI GCTCTTC 2 cut(s) 435, 476
SaqAI TTAA 3 cut(s) 599, 765, 836
SatI GCNGC 3 cut(s) 362, 395, 1008
Sau3AI GATC 3 cut(s) 223, 294, 988
Sau96I GGNCC 2 cut(s) 61, 977
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 2 cut(s) 173, 742
ScrFI CCNGG 4 cut(s) 65, 548, 614, 828
SduI GDGCHC 2 cut(s) 621, 900
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 569
SinI GGWCC 2 cut(s) 61, 977
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
Sse9I AATT 9 cut(s) 12, 150, 189, 245, 622, 676, 756, 936, 1097
SsiI CCGC 2 cut(s) 128, 695
SspMI CTAG 2 cut(s) 635, 702
StyD4I CCNGG 4 cut(s) 63, 546, 612, 826
StyI CCWWGG 2 cut(s) 171, 235
TaqI TCGA 1 cut(s) 1086
TasI AATT 9 cut(s) 12, 150, 189, 245, 622, 676, 756, 936, 1097
TatI WGTACW 2 cut(s) 555, 1038
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 3 cut(s) 599, 765, 836
Tru9I TTAA 3 cut(s) 599, 765, 836
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 338, 577
TseI GCWGC 3 cut(s) 361, 394, 1007
Tsp45I GTSAC 2 cut(s) 338, 577
TspDTI ATGAA 2 cut(s) 689, 1109
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 61, 977
VspI ATTAAT 1 cut(s) 836
XapI RAATTY 2 cut(s) 12, 189
XceI RCATGY 2 cut(s) 469, 646
XspI CTAG 2 cut(s) 635, 702
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.