Rh7CG255100

S-norcoclaurine synthase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016346
Physical Location & Seq
Forward (+)
24691203 .. 24700904
9702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG255100.1

Sequence Viewer

Length: 846 bp
ATGGAGACTGAGCTACTCATTAGAAAAGACCTGGGTGGTTCTCTCCCAGTTGAGAATGTTCAAGCCCTGGCTTCAAACAACTTGAAGGACATCCCGCGTCGATATCTCAGGCCTGAAGCTGAGATTGAACAAATTTCCATTGAGGACTCGCTTCAAATTCCAGTGGTTGATATGGACAAGTTAATGGGGAATCCATTGTTCCATGATGATGAATTGGCAAAACTTCATTTGGCTTGTAAGGAATGGGGCTTCTTTCAGCTGATCAATCATGGGGTATCAGAAGAAGTGATTGAGAAAATGAAGACTGACATACAGGAGTTCTTCGGGCTGCCATTAGAAGTAAAGAAGGCCTATGCAACACAGCCGAATCACATCGAAGGCTATGGCCAAGCGTTTGTTGTTTCGGAAGAGCAAAAACTTGACTGGGGAGACATGCTCTTCCTTCTCTCTCAACCAGTCCGCCAAAGGACTCTCACATTCTGGCCTACCCTTCCCACTTCTTTCAGGGAGACATTGGACAAGTATTCACAGGAGCTGCAACGATTAACGATCTACCTATTGAAGTCCATATCTAATAACCTAGGAGTCAATTTAGAGAAAATGGAAAGCATGTTTGATGATGGAGTACAAGGAGTAAGAATGAACTACTACCCACCCTGTCCACAGGCAAACAAAGTTATCGGTCTCACTCCACACTCTGATGCTGTGGGTTTGACTCTACTACTGCAAGTTAATGAAGTTCAAGGATTACAAATCAGGAAAAATGGAAAATGGGTACCTGTAAAACCTGCAGTTGGTGCATTCATCGTCAACGTGGGAGACATCATTGAGGTATTACAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

281

Amino Acids

31.9

Weight (kDa)

5.08

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 162 2.3e-31 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 280 5.2e-19 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21360
malus_domestica MD06G1038700.v1.1
prunus_persica Prupe.5G043900_v2.0.a1 Prupe.5G043900_v2.0.a1
pyrus_communis pycom06g03250
rosa_chinensis RchiOBHm_Chr7g0208701
rosa_laevigata RLG00000003198 RLG00000003200
rosa_multiflora Rmu_sc0004103.1_g000007
rosa_roxburghii Rroxscaffold_3G00250300
rosa_rugosa Rorug07G0105500
rosa_samantha Rh7AG240500 Rh7CG255100 Rh7DG246500
rosa_wichuraiana Rw7G020420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 796
Acc65I GGTACC 1 cut(s) 775
AccB1I GGYRCC 1 cut(s) 775
AccII CGCG 1 cut(s) 97
AciI CCGC 2 cut(s) 95, 460
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 2 cut(s) 132, 156
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 627, 777
AfiI CCNNNNNNNGG 1 cut(s) 794
AgsI TTSAA 7 cut(s) 62, 75, 85, 128, 155, 562, 743
AjnI CCWGG 2 cut(s) 30, 66
AluBI AGCT 4 cut(s) 13, 119, 259, 535
AluI AGCT 4 cut(s) 13, 119, 259, 535
Alw26I GTCTC 4 cut(s) 423, 503, 689, 813
AlwNI CAGNNNCTG 1 cut(s) 535
AoxI GGCC 4 cut(s) 110, 348, 385, 482
ApeKI GCWGC 2 cut(s) 328, 535
ApoI RAATTY 2 cut(s) 132, 156
Asp718I GGTACC 1 cut(s) 775
AspA2I CCTAGG 1 cut(s) 580
AvrII CCTAGG 1 cut(s) 580
BalI TGGCCA 1 cut(s) 387
BanI GGYRCC 1 cut(s) 775
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 315, 522
BccI CCATC 1 cut(s) 614
BciT130I CCWGG 2 cut(s) 32, 68
BclI TGATCA 1 cut(s) 261
BcoDI GTCTC 4 cut(s) 423, 503, 689, 813
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 796
BisI GCNGC 2 cut(s) 329, 536
BlnI CCTAGG 1 cut(s) 580
BlsI GCNGC 2 cut(s) 330, 537
Bme1390I CCNGG 2 cut(s) 32, 68
BmiI GGNNCC 1 cut(s) 777
BmrFI CCNGG 2 cut(s) 32, 68
BmrI ACTGGG 2 cut(s) 41, 433
BmsI GCATC 1 cut(s) 691
BmuI ACTGGG 2 cut(s) 41, 433
BpiI GAAGAC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 420, 452
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 31, 66, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 794
Bse1I ACTGG 4 cut(s) 47, 161, 428, 455
BseBI CCWGG 2 cut(s) 32, 68
BseDI CCNNGG 3 cut(s) 31, 66, 580
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 794
BseMII CTCAG 2 cut(s) 111, 121
BseNI ACTGG 4 cut(s) 47, 161, 428, 455
BseXI GCAGC 2 cut(s) 315, 522
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 4 cut(s) 112, 350, 387, 484
BshNI GGYRCC 1 cut(s) 775
BslI CCNNNNNNNGG 1 cut(s) 794
BsmAI GTCTC 4 cut(s) 423, 503, 689, 813
BsmI GAATGC 1 cut(s) 800
BsnI GGCC 4 cut(s) 112, 350, 387, 484
Bso31I GGTCTC 1 cut(s) 689
Bsp143I GATC 2 cut(s) 261, 549
BspACI CCGC 2 cut(s) 95, 460
BspANI GGCC 4 cut(s) 112, 350, 387, 484
BspCNI CTCAG 2 cut(s) 112, 120
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 777
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 796
BspQI GCTCTTC 2 cut(s) 402, 443
BspT107I GGYRCC 1 cut(s) 775
BspTNI GGTCTC 1 cut(s) 689
BsrI ACTGG 4 cut(s) 47, 161, 428, 455
BssECI CCNNGG 3 cut(s) 31, 66, 580
BssMI GATC 2 cut(s) 261, 549
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 32, 68
Bst6I CTCTTC 2 cut(s) 402, 443
BstAPI GCANNNNNTGC 1 cut(s) 797
BstDEI CTNAG 3 cut(s) 9, 107, 120
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 264, 552
BstMAI GTCTC 4 cut(s) 423, 503, 689, 813
BstMBI GATC 2 cut(s) 261, 549
BstMWI GCNNNNNNNGC 1 cut(s) 797
BstNI CCWGG 2 cut(s) 32, 68
BstNSI RCATGY 2 cut(s) 436, 613
BstSCI CCNGG 2 cut(s) 30, 66
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 315, 522
BstV2I GAAGAC 1 cut(s) 308
BsuRI GGCC 4 cut(s) 112, 350, 387, 484
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 796
CaiI CAGNNNCTG 1 cut(s) 535
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 626, 776
CviAII CATG 4 cut(s) 203, 269, 433, 610
CviQI GTAC 2 cut(s) 626, 776
DdeI CTNAG 3 cut(s) 9, 107, 120
DpnI GATC 2 cut(s) 263, 551
DpnII GATC 2 cut(s) 261, 549
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 402, 443
EarI CTCTTC 2 cut(s) 402, 443
EciI GGCGGA 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 580
Eco147I AGGCCT 2 cut(s) 112, 350
Eco31I GGTCTC 1 cut(s) 689
Eco32I GATATC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 30, 66
EcoRV GATATC 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 4 cut(s) 206, 272, 436, 613
FaiI YATR 9 cut(s) 173, 204, 270, 311, 354, 384, 434, 569, 611
FatI CATG 4 cut(s) 202, 268, 432, 609
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 329, 536
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 329, 536
FspBI CTAG 1 cut(s) 581
GluI GCNGC 2 cut(s) 329, 536
HaeIII GGCC 4 cut(s) 112, 350, 387, 484
HgaI GACGC 1 cut(s) 86
Hin1II CATG 4 cut(s) 206, 272, 436, 613
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 6 cut(s) 146, 190, 367, 469, 585, 715
Hpy166II GTNNAC 2 cut(s) 662, 811
Hpy188I TCNGA 3 cut(s) 280, 406, 700
Hpy188III TCNNGA 1 cut(s) 757
Hpy8I GTNNAC 2 cut(s) 662, 811
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 5 cut(s) 79, 340, 371, 452, 500
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 5 cut(s) 356, 538, 727, 791, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 797
HpyF3I CTNAG 3 cut(s) 9, 107, 120
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 4 cut(s) 206, 272, 436, 613
KpnI GGTACC 1 cut(s) 779
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 261, 549
LguI GCTCTTC 2 cut(s) 402, 443
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 2 cut(s) 315, 522
LweI GCATC 1 cut(s) 691
MaeI CTAG 1 cut(s) 581
MaeII ACGT 1 cut(s) 813
MalI GATC 2 cut(s) 263, 551
MboI GATC 2 cut(s) 261, 549
MboII GAAGA 5 cut(s) 293, 313, 313, 419, 430
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 4 cut(s) 132, 156, 212, 589
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 4 cut(s) 140, 463, 594, 709
MnlI CCTC 2 cut(s) 136, 823
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 3 cut(s) 182, 545, 732
MslI CAYNNNNRTG 2 cut(s) 207, 699
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 259
MspR9I CCNGG 2 cut(s) 32, 68
Mva1269I GAATGC 1 cut(s) 800
MvaI CCWGG 2 cut(s) 32, 68
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 797
NdeII GATC 2 cut(s) 261, 549
NlaIII CATG 4 cut(s) 206, 272, 436, 613
NlaIV GGNNCC 1 cut(s) 777
NspI RCATGY 2 cut(s) 436, 613
PceI AGGCCT 2 cut(s) 112, 350
PciSI GCTCTTC 2 cut(s) 402, 443
PctI GAATGC 1 cut(s) 800
PfeI GAWTC 2 cut(s) 190, 367
PkrI GCNGC 2 cut(s) 330, 537
PleI GAGTC 4 cut(s) 140, 463, 593, 709
PpsI GAGTC 4 cut(s) 140, 463, 593, 709
Psp6I CCWGG 2 cut(s) 30, 66
PspGI CCWGG 2 cut(s) 30, 66
PspN4I GGNNCC 1 cut(s) 777
PstI CTGCAG 1 cut(s) 793
PstNI CAGNNNCTG 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 2 cut(s) 627, 777
RsaNI GTAC 2 cut(s) 626, 776
RseI CAYNNNNRTG 2 cut(s) 207, 699
SapI GCTCTTC 2 cut(s) 402, 443
SaqAI TTAA 3 cut(s) 182, 545, 732
SatI GCNGC 2 cut(s) 329, 536
Sau3AI GATC 2 cut(s) 261, 549
SchI GAGTC 4 cut(s) 140, 463, 594, 709
ScrFI CCNGG 2 cut(s) 32, 68
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 2 cut(s) 207, 699
Sse9I AATT 4 cut(s) 132, 156, 212, 589
SseBI AGGCCT 2 cut(s) 112, 350
SsiI CCGC 2 cut(s) 95, 460
SspMI CTAG 1 cut(s) 581
StuI AGGCCT 2 cut(s) 112, 350
StyD4I CCNGG 2 cut(s) 30, 66
StyI CCWWGG 1 cut(s) 580
TaiI ACGT 1 cut(s) 816
TaqI TCGA 2 cut(s) 100, 375
TaqII GACCGA 1 cut(s) 671
TasI AATT 4 cut(s) 132, 156, 212, 589
TatI WGTACW 1 cut(s) 625
TfiI GAWTC 2 cut(s) 190, 367
Tru1I TTAA 3 cut(s) 182, 545, 732
Tru9I TTAA 3 cut(s) 182, 545, 732
TscAI CASTG 1 cut(s) 168
TseI GCWGC 2 cut(s) 328, 535
TspDTI ATGAA 6 cut(s) 215, 225, 314, 656, 750, 793
TspRI CASTG 1 cut(s) 168
XapI RAATTY 2 cut(s) 132, 156
XceI RCATGY 2 cut(s) 436, 613
XmaJI CCTAGG 1 cut(s) 580
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.