RLG00000003198

S-norcoclaurine synthase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016346
Physical Location & Seq
Reverse (-)
45527598 .. 45529240
1643 bp
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UTR
Exon/CDS
Intron
RLM00000003198

Sequence Viewer

Length: 405 bp
ATGCTGAAGCTCATGGCCTGGAAGGACATCCCACGTCGATATCTCAGGCCTGAAGCTGAGATTGAACAATTGATCAATCATGGGGTATCAGAAGAAGTGATTGAGAAAATGAAAACTGACACACAGGAGTTCTTCGGGCTGCCATTAGAAGTAAAGAAGGCCTATGCAACACGGCCGAATCACATCGAAGGCTATGGCCAAGCCTTTGTTGTTTCGGAAGAGCAAAAACTTGACTGCGGTCTCTCTCAACCAGTCCGCCAAAGAACTCTCACATTCTGGCCTACCCTTCCCACTTCTTTCAGGGAGACATTGGATAAGTATTCACAGGAGCTGCAACGAGTGACAATCTACCTACTGAAGTCCATTCCATCAATTACATCCTGTTGCATGAAGTCAATCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

135

Amino Acids

15.58

Weight (kDa)

7.69

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 23 - 78 7.2e-15 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21360
malus_domestica MD06G1038700.v1.1
prunus_persica Prupe.5G043900_v2.0.a1 Prupe.5G043900_v2.0.a1
pyrus_communis pycom06g03250
rosa_chinensis RchiOBHm_Chr7g0208701
rosa_laevigata RLG00000003198 RLG00000003200
rosa_multiflora Rmu_sc0004103.1_g000007
rosa_roxburghii Rroxscaffold_3G00250300
rosa_rugosa Rorug07G0105500
rosa_samantha Rh7AG240500 Rh7CG255100 Rh7DG246500
rosa_wichuraiana Rw7G020420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 237, 256
AcoI YGGCCR 2 cut(s) 173, 196
AcuI CTGAAG 3 cut(s) 26, 72, 377
AgsI TTSAA 1 cut(s) 65
AjiI CACGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 3 cut(s) 10, 56, 331
AluI AGCT 3 cut(s) 10, 56, 331
Alw26I GTCTC 2 cut(s) 245, 299
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 6 cut(s) 15, 47, 159, 173, 196, 278
ApeKI GCWGC 2 cut(s) 139, 331
BalI TGGCCA 1 cut(s) 198
BbvI GCAGC 2 cut(s) 126, 318
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 19
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 245, 299
BisI GCNGC 2 cut(s) 140, 332
BlsI GCNGC 2 cut(s) 141, 333
Bme1390I CCNGG 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 19
BoxI GACNNNNGTC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 27, 377
BseMII CTCAG 2 cut(s) 48, 58
BseNI ACTGG 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 126, 318
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 6 cut(s) 17, 49, 161, 175, 198, 280
BsiEI CGRYCG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 245, 299
BsnI GGCC 6 cut(s) 17, 49, 161, 175, 198, 280
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 2 cut(s) 237, 256
BspANI GGCC 6 cut(s) 17, 49, 161, 175, 198, 280
BspCNI CTCAG 2 cut(s) 49, 57
BspQI GCTCTTC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 251
BssMI GATC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 2 cut(s) 44, 57
BstF5I GGATG 2 cut(s) 27, 377
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 2 cut(s) 245, 299
BstMBI GATC 1 cut(s) 72
BstMCI CGRYCG 1 cut(s) 176
BstNI CCWGG 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 126, 318
BstZI CGGCCG 1 cut(s) 173
BsuRI GGCC 6 cut(s) 17, 49, 161, 175, 198, 280
BtrI CACGTC 1 cut(s) 35
BtsCI GGATG 2 cut(s) 27, 377
CaiI CAGNNNCTG 1 cut(s) 331
CviAII CATG 3 cut(s) 13, 80, 388
DdeI CTNAG 2 cut(s) 44, 57
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EaeI YGGCCR 2 cut(s) 173, 196
EagI CGGCCG 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 245
EclXI CGGCCG 1 cut(s) 173
Eco147I AGGCCT 2 cut(s) 49, 161
Eco31I GGTCTC 1 cut(s) 245
Eco32I GATATC 1 cut(s) 41
Eco52I CGGCCG 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 26, 72, 377
EcoRII CCWGG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 41
FaeI CATG 3 cut(s) 16, 83, 391
FaiI YATR 5 cut(s) 14, 81, 165, 195, 389
FatI CATG 3 cut(s) 12, 79, 387
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 140, 332
FokI GGATG 2 cut(s) 14, 364
Fsp4HI GCNGC 2 cut(s) 140, 332
GluI GCNGC 2 cut(s) 140, 332
HaeIII GGCC 6 cut(s) 17, 49, 161, 175, 198, 280
Hin1II CATG 3 cut(s) 16, 83, 391
HinfI GANTC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 91, 217
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 4 cut(s) 16, 151, 182, 296
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 167, 334, 387
HpyF3I CTNAG 2 cut(s) 44, 57
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 3 cut(s) 16, 83, 391
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 1 cut(s) 72
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 2 cut(s) 126, 318
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 3 cut(s) 104, 124, 230
MfeI CAATTG 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 2 cut(s) 68, 372
MluNI TGGCCA 1 cut(s) 198
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 19
MunI CAATTG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 19
NdeII GATC 1 cut(s) 72
NlaIII CATG 3 cut(s) 16, 83, 391
NmuCI GTSAC 1 cut(s) 340
PceI AGGCCT 2 cut(s) 49, 161
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 141, 333
PshAI GACNNNNGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 2 cut(s) 140, 332
Sau3AI GATC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 19
SetI ASST 5 cut(s) 12, 37, 58, 333, 354
Sse9I AATT 2 cut(s) 68, 372
SseBI AGGCCT 2 cut(s) 49, 161
SsiI CCGC 2 cut(s) 237, 256
StuI AGGCCT 2 cut(s) 49, 161
StyD4I CCNGG 1 cut(s) 17
TaiI ACGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 37, 186
TasI AATT 2 cut(s) 68, 372
TfiI GAWTC 1 cut(s) 178
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 2 cut(s) 139, 331
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 125, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.