Prupe.5G075300_v2.0.a1

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016591
Physical Location & Seq
Forward (+)
8923050 .. 8924805
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G075300.1

Sequence Viewer

Length: 840 bp
ATGCTCAAGGCAGTAGGTCTCTTTGGCCGGAAGAAGACAACTCGTCAATTCAAAGACTTCTACGCCGAATGGTTCAACACCCTCAAGAACACGCTCCTCCCTTCTCTCCGAAGCTCAATGTCCGAGTCAGACTCGTCCCTCACTCGGCTCTCGACTCAGATGGAAGCCCTCCACCTCCACTTCCAGTCCTACTACGACGCCCTCGACCTCGCCGCCCAGAACGACGTCGCTCAGCTCCTCTGCCCCACCTGGCGCAACCCTCTCGAGAAGCCCTTCCTCTTCCTCGGCGACTTCCATCCCTACCTCTTCACCAACCTCCTCCGCTCCTTCCTCACCCAAAACGACACCGACTCGGACAACGAAAACGACGGCGACAGCATGGTAGTTCAGTGCGACAGAGGAGACAGGGACCGCTTCGACCGGCCCTGGCACATCGCGACGGCGTGGAGGAGGCCGTCGTACAATTTGATGGAGAGGGTCGAGCAGGTGGAGCGCGGGCTGCGGCTTATGGTGCCGGCGCTGGCGGCGCGTGCTAGGGACGCGCAGGTCGGGTTCTTGGAGCGCGTGGCGAGGAATTGGGCTTTTGGGACCCACAAGGCGGCGGTGGAGGAGGCGATGGCGGAGCAGAATGAGGAGATGGTGGGGGTTTTTGTGGACGCCAATAGGCTGAGGAAGAGTGTTCTTGTGGAGATTATGGGTGCAACTAGCGTTTTCCAGGGTGCTCTGTTTCTTGAAGGGTTGGCCCAATTTCTTGTTGGGTTCAGAGATCCTGAACTGCTTGCTCAGTTTGAGCTCTGCAAGACGCCTCTCAGCAAGCAGAGTAAGTTGTTGGCGATTTGA

Protein Analysis

280

Amino Acids

31.92

Weight (kDa)

6.01

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22600
fragaria_vesca FvH4_5g00261
malus_domestica MD06G1063700.v1.1
prunus_persica Prupe.5G075300_v2.0.a1
pyrus_communis pycom06g05990
rosa_chinensis RchiOBHm_Chr7g0202371
rosa_laevigata RLG00000003606
rosa_multiflora Rmu_sc0000266.1_g000010
rosa_rugosa Rorug07G0070100
rosa_samantha Rh7AG197600 Rh7BG198600 Rh7CG208700 Rh7DG204400
rosa_wichuraiana Rw7G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 475
AasI GACNNNNNNGTC 1 cut(s) 545
AatII GACGTC 1 cut(s) 228
Acc36I ACCTGC 2 cut(s) 475, 535
AccB1I GGYRCC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 324
AccII CGCG 5 cut(s) 437, 495, 529, 542, 564
AciI CCGC 9 cut(s) 213, 322, 412, 495, 502, 524, 599, 602, 620
AclWI GGATC 1 cut(s) 761
AcoI YGGCCR 1 cut(s) 25
AcyI GRCGYC 4 cut(s) 198, 225, 657, 803
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 144, 598
AgsI TTSAA 3 cut(s) 52, 76, 734
AhdI GACNNNNNGTC 1 cut(s) 42
AjnI CCWGG 3 cut(s) 248, 425, 714
AluBI AGCT 3 cut(s) 114, 235, 793
AluI AGCT 3 cut(s) 114, 235, 793
Alw21I GWGCWC 2 cut(s) 724, 795
Alw26I GTCTC 2 cut(s) 23, 396
AlwI GGATC 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 25, 422, 452, 741
ApeKI GCWGC 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 6 cut(s) 255, 495, 520, 529, 544, 564
AspS9I GGNCC 4 cut(s) 409, 423, 588, 742
AsuHPI GGTGA 2 cut(s) 301, 325
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 2 cut(s) 409, 588
BanI GGYRCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 724, 795
BbvCI CCTCAGC 1 cut(s) 668
BbvI GCAGC 1 cut(s) 486
BccI CCATC 5 cut(s) 154, 303, 463, 610, 631
BceAI ACGGC 3 cut(s) 385, 439, 456
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 3 cut(s) 250, 427, 716
BcoDI GTCTC 2 cut(s) 23, 396
BfaI CTAG 2 cut(s) 534, 705
BfoI RGCGCY 1 cut(s) 521
BfuAI ACCTGC 2 cut(s) 475, 535
BisI GCNGC 5 cut(s) 213, 500, 503, 525, 600
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 5 cut(s) 214, 501, 504, 526, 601
Bme1390I CCNGG 3 cut(s) 250, 427, 716
Bme18I GGWCC 2 cut(s) 409, 588
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 4 cut(s) 409, 423, 588, 742
BmiI GGNNCC 4 cut(s) 410, 513, 589, 590
BmrFI CCNGG 3 cut(s) 250, 427, 716
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu10I CCTNAGC 1 cut(s) 668
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 68
BsaHI GRCGYC 4 cut(s) 198, 225, 657, 803
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 283, 425, 715
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 598
Bse118I RCCGGY 2 cut(s) 420, 514
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 3 cut(s) 250, 427, 716
BseDI CCNNGG 3 cut(s) 283, 425, 715
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 144, 598
BseMII CTCAG 5 cut(s) 170, 245, 659, 797, 823
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 7 cut(s) 86, 227, 308, 414, 463, 623, 647
BseXI GCAGC 1 cut(s) 486
Bsh1236I CGCG 5 cut(s) 437, 495, 529, 542, 564
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 4 cut(s) 27, 424, 454, 743
BshNI GGYRCC 1 cut(s) 511
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 724, 795
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 3 cut(s) 28, 421, 515
BslFI GGGAC 4 cut(s) 121, 422, 551, 601
BslI CCNNNNNNNGG 2 cut(s) 144, 598
BsmAI GTCTC 2 cut(s) 23, 396
BsmFI GGGAC 4 cut(s) 121, 422, 551, 601
BsnI GGCC 4 cut(s) 27, 424, 454, 743
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 724, 795
Bsp143I GATC 1 cut(s) 766
Bsp1720I GCTNAGC 1 cut(s) 231
Bsp68I TCGCGA 1 cut(s) 437
BspACI CCGC 9 cut(s) 213, 322, 412, 495, 502, 524, 599, 602, 620
BspANI GGCC 4 cut(s) 27, 424, 454, 743
BspCNI CTCAG 5 cut(s) 169, 244, 660, 796, 822
BspFNI CGCG 5 cut(s) 437, 495, 529, 542, 564
BspLI GGNNCC 4 cut(s) 410, 513, 589, 590
BspMI ACCTGC 2 cut(s) 475, 535
BspPI GGATC 1 cut(s) 761
BspT107I GGYRCC 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 324
BsrFI RCCGGY 2 cut(s) 420, 514
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 2 cut(s) 420, 514
BssECI CCNNGG 3 cut(s) 283, 425, 715
BssMI GATC 1 cut(s) 766
BssNI GRCGYC 4 cut(s) 198, 225, 657, 803
Bst2UI CCWGG 3 cut(s) 250, 427, 716
Bst6I CTCTTC 3 cut(s) 284, 311, 668
BstACI GRCGYC 4 cut(s) 198, 225, 657, 803
BstC8I GCNNGC 6 cut(s) 497, 516, 522, 531, 780, 815
BstDEI CTNAG 5 cut(s) 156, 231, 668, 783, 809
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 5 cut(s) 437, 495, 529, 542, 564
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 6 cut(s) 255, 495, 520, 529, 544, 564
BstKTI GATC 1 cut(s) 769
BstMAI GTCTC 2 cut(s) 23, 396
BstMBI GATC 1 cut(s) 766
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 7 cut(s) 490, 499, 511, 524, 526, 530, 539
BstNI CCWGG 3 cut(s) 250, 427, 716
BstSCI CCNGG 3 cut(s) 248, 425, 714
BstUI CGCG 5 cut(s) 437, 495, 529, 542, 564
BstV1I GCAGC 1 cut(s) 486
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuRI GGCC 4 cut(s) 27, 424, 454, 743
BtgZI GCGATG 2 cut(s) 418, 629
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 395
BtuMI TCGCGA 1 cut(s) 437
BveI ACCTGC 2 cut(s) 475, 535
Cac8I GCNNGC 6 cut(s) 497, 516, 522, 531, 780, 815
CfoI GCGC 6 cut(s) 255, 495, 520, 529, 544, 564
Cfr10I RCCGGY 2 cut(s) 420, 514
Cfr13I GGNCC 4 cut(s) 409, 423, 588, 742
CseI GACGC 4 cut(s) 206, 548, 665, 811
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 379
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 5 cut(s) 156, 231, 668, 783, 809
DpnI GATC 1 cut(s) 768
DpnII GATC 1 cut(s) 766
DrdI GACNNNNNNGTC 1 cut(s) 545
DriI GACNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 545
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 3 cut(s) 284, 311, 668
Eam1105I GACNNNNNGTC 1 cut(s) 42
EarI CTCTTC 3 cut(s) 284, 311, 668
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 1 cut(s) 793
Eco24I GRGCYC 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 409, 588
Eco53kI GAGCTC 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 793
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 3 cut(s) 248, 425, 714
EcoT38I GRGCYC 1 cut(s) 795
FaeI CATG 1 cut(s) 382
FaiI YATR 3 cut(s) 380, 509, 695
FaqI GGGAC 4 cut(s) 121, 422, 551, 601
FatI CATG 1 cut(s) 378
FauI CCCGC 1 cut(s) 488
Fnu4HI GCNGC 5 cut(s) 213, 500, 503, 525, 600
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 5 cut(s) 213, 500, 503, 525, 600
FspBI CTAG 2 cut(s) 534, 705
GlaI GCGC 6 cut(s) 254, 494, 519, 528, 543, 563
GluI GCNGC 5 cut(s) 213, 500, 503, 525, 600
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 4 cut(s) 27, 424, 454, 743
HapII CCGG 3 cut(s) 28, 421, 515
HgaI GACGC 4 cut(s) 206, 548, 665, 811
HhaI GCGC 6 cut(s) 255, 495, 520, 529, 544, 564
Hin1I GRCGYC 4 cut(s) 198, 225, 657, 803
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 6 cut(s) 253, 493, 518, 527, 542, 562
HinP1I GCGC 6 cut(s) 253, 493, 518, 527, 542, 562
HinfI GANTC 4 cut(s) 125, 131, 154, 350
HpaII CCGG 3 cut(s) 28, 421, 515
HphI GGTGA 2 cut(s) 301, 325
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 6 cut(s) 110, 124, 130, 159, 355, 764
Hpy188III TCNNGA 7 cut(s) 85, 151, 263, 265, 436, 731, 770
Hpy8I GTNNAC 1 cut(s) 655
Hpy99I CGWCG 6 cut(s) 200, 227, 230, 371, 442, 460
HpyAV CCTTC 4 cut(s) 111, 283, 337, 728
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 701, 798
HpyF10VI GCNNNNNNNGC 7 cut(s) 490, 499, 511, 524, 526, 530, 539
HpyF3I CTNAG 5 cut(s) 156, 231, 668, 783, 809
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 4 cut(s) 198, 225, 657, 803
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 6 cut(s) 253, 493, 518, 527, 542, 562
KflI GGGWCCC 1 cut(s) 588
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 1 cut(s) 766
LmnI GCTCC 6 cut(s) 99, 240, 329, 490, 559, 622
Lsp1109I GCAGC 1 cut(s) 486
MaeI CTAG 2 cut(s) 534, 705
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 768
MbiI CCGCTC 1 cut(s) 324
MboI GATC 1 cut(s) 766
MboII GAAGA 5 cut(s) 43, 46, 271, 298, 685
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 2 cut(s) 724, 795
MluCI AATT 4 cut(s) 47, 463, 574, 746
MlyI GAGTC 4 cut(s) 125, 134, 148, 344
MroNI GCCGGC 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 272
MspI CCGG 3 cut(s) 28, 421, 515
MspR9I CCNGG 3 cut(s) 250, 427, 716
MvaI CCWGG 3 cut(s) 250, 427, 716
MvnI CGCG 5 cut(s) 437, 495, 529, 542, 564
MwoI GCNNNNNNNGC 7 cut(s) 490, 499, 511, 524, 526, 530, 539
NaeI GCCGGC 1 cut(s) 516
NdeII GATC 1 cut(s) 766
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 4 cut(s) 410, 513, 589, 590
NmeAIII GCCGAG 2 cut(s) 124, 264
NruI TCGCGA 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 263
PaqCI CACCTGC 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdiI GCCGGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 272
PkrI GCNGC 5 cut(s) 214, 501, 504, 526, 601
PleI GAGTC 4 cut(s) 125, 133, 148, 344
PpsI GAGTC 4 cut(s) 125, 133, 148, 344
PpuMI RGGWCCY 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 588
Psp6I CCWGG 3 cut(s) 248, 425, 714
PspGI CCWGG 3 cut(s) 248, 425, 714
PspN4I GGNNCC 4 cut(s) 410, 513, 589, 590
PspPI GGNCC 4 cut(s) 409, 423, 588, 742
PspPPI RGGWCCY 1 cut(s) 588
PsuI RGATCY 1 cut(s) 766
RruI TCGCGA 1 cut(s) 437
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SacI GAGCTC 1 cut(s) 795
SatI GCNGC 5 cut(s) 213, 500, 503, 525, 600
Sau3AI GATC 1 cut(s) 766
Sau96I GGNCC 4 cut(s) 409, 423, 588, 742
SchI GAGTC 4 cut(s) 125, 134, 148, 344
ScrFI CCNGG 3 cut(s) 250, 427, 716
SduI GDGCHC 2 cut(s) 724, 795
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 2 cut(s) 409, 588
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 3 cut(s) 5, 83, 263
SmoI CTYRAG 3 cut(s) 5, 83, 263
Sse9I AATT 4 cut(s) 47, 463, 574, 746
SsiI CCGC 9 cut(s) 213, 322, 412, 495, 502, 524, 599, 602, 620
SspMI CTAG 2 cut(s) 534, 705
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 3 cut(s) 248, 425, 714
TaiI ACGT 1 cut(s) 228
TaqI TCGA 5 cut(s) 152, 204, 264, 417, 480
TasI AATT 4 cut(s) 47, 463, 574, 746
TauI GCSGC 4 cut(s) 215, 505, 527, 602
TscAI CASTG 1 cut(s) 395
TseI GCWGC 1 cut(s) 499
TspRI CASTG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 409, 588
XcmI CCANNNNNNNNNTGG 1 cut(s) 752
XhoI CTCGAG 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 2 cut(s) 534, 705
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.