Rh7CG208700

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016591
Physical Location & Seq
Reverse (-)
18703812 .. 18705649
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG208700.1

Sequence Viewer

Length: 1188 bp
ATGGTATATCGATGGTATTGCAGATATTTAGAACCTTACTCCATAATGCTGATGTTCTTGCGAAAGTCTGTGTCGCTAATACTCTTGCTATTGTTTCGAGAGTCATACTTGATGACACAGTCGGAGTATCTCGTCCTTAAAAGTTTTGCTTCTTTGCTTGGGCCTCTTCCCCCCTATGTACTAAAAGAAAACGTCCCATCGAGAATTAAAAACCAAATGCCCTTTAAAACCTTCCTTTCCCTCCACGCTACCTCACACACATCAACTTCCTCTCTTCCTCCTCCCCCAAAACACCAAGGAAACCAGAAGAAGAAAGAAAGCCAAGAAGTCCCACCAAGAATCTCCAAGATGTTGAAAGCAGTGGGTCTTTTCGGCCGCAGCAGCAACAACAAGAAGAGCCCCCGCCCCTTCAAGGACTACTACTCCGAATGGCTGACCACCCTCAAGTCCTCCCTCCTCCCTTCCCTCCGCCAATCCCTCTCCGACGCCTCCTCCCTCCCAAACCTCTCCCTCCACGTCGACGCCCTCCACCGCCACTTCCTCTCCTACTACGACGCCCTCGACTCCACCGCCCAGTCCGACGTCGCCCAGCTCCTCTTCCCCGACTGGCGCAACCCTCTCGAGAAGCCCTTCCTCTGGCTCGCCGACCTCCACCCCTACCTCTTCACCAACCTCCTCCGCTCCTTCCTCGACTCCGCCTCCGACGAAGATTCCGACGCCGACTCCGACAGCCTCGTCGTCCAGTTCGGTGACCGCCCCTGGCACATCGCCACCGCCTGGCGCAGCCCTTCCTCTTCTCTCACGCAAAAGGTCGAGCAGGTGGAGTGCGGTCTCAGGCTCATGGTGCCTGCGCTGGCGGCGCGTGCGAGGGACGCGCAGGCCGCGTGCGTGGAGCGCGTGGCGAGGAACTGGGGGCCTTACGACGCCGGGAAGAAGGAGGCGGCGAAGGCGGTGATGGCGGAGGCGATGGAGGCGGAGATGGAGGAGATGGTGAGCGTTCTGGTGGATGCGAATAGGCTGAGGAGGAGTGTTCTTGCCGAGATTGTTGGGGCCGCCAGTGTGTACCAGGCCGCTCTGTTTCTTGAAGGCCTGGCCCAATTTCTTGTTGGGTTCAGAAACCCGGAATTGCTTGCTCAGTTTGATCAGTGCAAGACTCCTCTCAGTAAGCAATGCCGCTTGGCTATTTGA

Protein Analysis

395

Amino Acids

44.62

Weight (kDa)

8.92

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 153 - 228 5.7e-19 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22600
fragaria_vesca FvH4_5g00261
malus_domestica MD06G1063700.v1.1
prunus_persica Prupe.5G075300_v2.0.a1
pyrus_communis pycom06g05990
rosa_chinensis RchiOBHm_Chr7g0202371
rosa_laevigata RLG00000003606
rosa_multiflora Rmu_sc0000266.1_g000010
rosa_rugosa Rorug07G0070100
rosa_samantha Rh7AG197600 Rh7BG198600 Rh7CG208700 Rh7DG204400
rosa_wichuraiana Rw7G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
AasI GACNNNNNNGTC 1 cut(s) 734
AatII GACGTC 1 cut(s) 585
Acc36I ACCTGC 1 cut(s) 808
AccB1I GGYRCC 1 cut(s) 844
AccB7I CCANNNNNTGG 1 cut(s) 777
AccBSI CCGCTC 2 cut(s) 681, 1073
AccI GTMKAC 1 cut(s) 519
AccII CGCG 4 cut(s) 862, 875, 884, 897
AcoI YGGCCR 1 cut(s) 373
AcyI GRCGYC 6 cut(s) 486, 522, 555, 582, 717, 924
AfaI GTAC 2 cut(s) 180, 1064
AfiI CCNNNNNNNGG 3 cut(s) 412, 636, 777
AgsI TTSAA 3 cut(s) 355, 412, 1085
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 4 cut(s) 758, 776, 1065, 1089
AluBI AGCT 1 cut(s) 592
AluI AGCT 1 cut(s) 592
Alw26I GTCTC 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 8 cut(s) 161, 373, 879, 914, 1050, 1068, 1087, 1092
ApeKI GCWGC 3 cut(s) 378, 381, 783
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 6 cut(s) 612, 783, 853, 862, 877, 897
AspS9I GGNCC 4 cut(s) 161, 914, 1050, 1093
AsuC2I CCSGG 2 cut(s) 928, 1121
AsuHPI GGTGA 4 cut(s) 658, 761, 964, 1003
AvaI CYCGRG 1 cut(s) 620
BanI GGYRCC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 401
BbvCI CCTCAGC 1 cut(s) 1019
BbvI GCAGC 3 cut(s) 390, 393, 795
BccI CCATC 6 cut(s) 6, 205, 949, 961, 973, 982
BcgI CGANNNNNNTGC 3 cut(s) 34, 601, 635
BciT130I CCWGG 4 cut(s) 760, 778, 1067, 1091
BclI TGATCA 1 cut(s) 1141
BcnI CCSGG 2 cut(s) 928, 1121
BcoDI GTCTC 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 808
Bme1390I CCNGG 6 cut(s) 760, 778, 928, 1067, 1091, 1121
BmeT110I CYCGRG 1 cut(s) 620
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 4 cut(s) 161, 914, 1050, 1093
BmiI GGNNCC 3 cut(s) 846, 915, 1051
BmrFI CCNGG 6 cut(s) 760, 778, 928, 1067, 1091, 1121
BmrI ACTGGG 2 cut(s) 568, 919
BmsI GCATC 1 cut(s) 997
BmuI ACTGGG 2 cut(s) 568, 919
Bpu10I CCTNAGC 1 cut(s) 1019
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 2 cut(s) 928, 1121
Bsa29I ATCGAT 1 cut(s) 10
BsaHI GRCGYC 6 cut(s) 486, 522, 555, 582, 717, 924
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 295, 758
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 636, 777
Bse1I ACTGG 5 cut(s) 574, 611, 742, 914, 1056
Bse3DI GCAATG 1 cut(s) 1175
BseBI CCWGG 4 cut(s) 760, 778, 1067, 1091
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 295, 758
BseGI GGATG 1 cut(s) 1012
BseLI CCNNNNNNNGG 3 cut(s) 412, 636, 777
BseMI GCAATG 1 cut(s) 1175
BseMII CTCAG 4 cut(s) 847, 1010, 1148, 1174
BseNI ACTGG 5 cut(s) 574, 611, 742, 914, 1056
BseRI GAGGAG 9 cut(s) 270, 446, 481, 584, 665, 998, 1036, 1039, 1146
BseX3I CGGCCG 1 cut(s) 373
BseXI GCAGC 3 cut(s) 390, 393, 795
BseYI CCCAGC 1 cut(s) 588
Bsh1236I CGCG 4 cut(s) 862, 875, 884, 897
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 8 cut(s) 163, 375, 881, 916, 1052, 1070, 1089, 1094
BshNI GGYRCC 1 cut(s) 844
BshVI ATCGAT 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 927, 1121
BslFI GGGAC 3 cut(s) 179, 314, 884
BslI CCNNNNNNNGG 3 cut(s) 412, 636, 777
BsmAI GTCTC 1 cut(s) 836
BsmFI GGGAC 3 cut(s) 179, 314, 884
BsnI GGCC 8 cut(s) 163, 375, 881, 916, 1052, 1070, 1089, 1094
Bso31I GGTCTC 1 cut(s) 836
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 1 cut(s) 1141
BspANI GGCC 8 cut(s) 163, 375, 881, 916, 1052, 1070, 1089, 1094
BspCNI CTCAG 4 cut(s) 846, 1011, 1147, 1173
BspDI ATCGAT 1 cut(s) 10
BspFNI CGCG 4 cut(s) 862, 875, 884, 897
BspLI GGNNCC 3 cut(s) 846, 915, 1051
BspMI ACCTGC 1 cut(s) 808
BspQI GCTCTTC 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 844
BspTNI GGTCTC 1 cut(s) 836
BsrBI CCGCTC 2 cut(s) 681, 1073
BsrDI GCAATG 1 cut(s) 1175
BsrI ACTGG 5 cut(s) 574, 611, 742, 914, 1056
BssECI CCNNGG 2 cut(s) 295, 758
BssMI GATC 1 cut(s) 1141
BssNI GRCGYC 6 cut(s) 486, 522, 555, 582, 717, 924
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 4 cut(s) 760, 778, 1067, 1091
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 6 cut(s) 171, 279, 389, 602, 668, 799
BstACI GRCGYC 6 cut(s) 486, 522, 555, 582, 717, 924
BstC8I GCNNGC 7 cut(s) 642, 849, 855, 864, 879, 886, 1131
BstDEI CTNAG 4 cut(s) 833, 1019, 1134, 1160
BstEII GGTNACC 1 cut(s) 749
BstF5I GGATG 1 cut(s) 1012
BstFNI CGCG 4 cut(s) 862, 875, 884, 897
BstHHI GCGC 6 cut(s) 612, 783, 853, 862, 877, 897
BstKTI GATC 1 cut(s) 1144
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 1 cut(s) 1141
BstMCI CGRYCG 1 cut(s) 376
BstNI CCWGG 4 cut(s) 760, 778, 1067, 1091
BstPI GGTNACC 1 cut(s) 749
BstSCI CCNGG 6 cut(s) 758, 776, 926, 1065, 1089, 1119
BstUI CGCG 4 cut(s) 862, 875, 884, 897
BstV1I GCAGC 3 cut(s) 390, 393, 795
BstZI CGGCCG 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 10
BsuRI GGCC 8 cut(s) 163, 375, 881, 916, 1052, 1070, 1089, 1094
BsuTUI ATCGAT 1 cut(s) 10
BtgZI GCGATG 2 cut(s) 751, 980
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 1 cut(s) 1012
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 366, 1063, 1151
BveI ACCTGC 1 cut(s) 808
Cac8I GCNNGC 7 cut(s) 642, 849, 855, 864, 879, 886, 1131
CfoI GCGC 6 cut(s) 612, 783, 853, 862, 877, 897
Cfr13I GGNCC 4 cut(s) 161, 914, 1050, 1093
ClaI ATCGAT 1 cut(s) 10
CseI GACGC 6 cut(s) 494, 530, 563, 725, 881, 932
Csp6I GTAC 2 cut(s) 179, 1063
CviAII CATG 1 cut(s) 841
CviQI GTAC 2 cut(s) 179, 1063
DdeI CTNAG 4 cut(s) 833, 1019, 1134, 1160
DpnI GATC 1 cut(s) 1143
DpnII GATC 1 cut(s) 1141
DraI TTTAAA 1 cut(s) 226
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
EaeI YGGCCR 1 cut(s) 373
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 6 cut(s) 171, 279, 389, 602, 668, 799
EarI CTCTTC 6 cut(s) 171, 279, 389, 602, 668, 799
EciI GGCGGA 4 cut(s) 458, 685, 974, 989
EclXI CGGCCG 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 1089
Eco24I GRGCYC 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 836
Eco52I CGGCCG 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 914
EcoO65I GGTNACC 1 cut(s) 749
EcoRII CCWGG 4 cut(s) 758, 776, 1065, 1089
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 844
FaiI YATR 5 cut(s) 7, 44, 106, 177, 842
FalI AAGNNNNNCTT 2 cut(s) 133, 165
FaqI GGGAC 3 cut(s) 179, 314, 884
FatI CATG 1 cut(s) 840
FauI CCCGC 1 cut(s) 410
FbaI TGATCA 1 cut(s) 1141
FblI GTMKAC 1 cut(s) 519
FokI GGATG 1 cut(s) 1019
FriOI GRGCYC 1 cut(s) 401
GlaI GCGC 6 cut(s) 611, 782, 852, 861, 876, 896
GsaI CCCAGC 1 cut(s) 592
HaeIII GGCC 8 cut(s) 163, 375, 881, 916, 1052, 1070, 1089, 1094
HapII CCGG 2 cut(s) 927, 1121
HgaI GACGC 6 cut(s) 494, 530, 563, 725, 881, 932
HhaI GCGC 6 cut(s) 612, 783, 853, 862, 877, 897
Hin1I GRCGYC 6 cut(s) 486, 522, 555, 582, 717, 924
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 6 cut(s) 610, 781, 851, 860, 875, 895
HinP1I GCGC 6 cut(s) 610, 781, 851, 860, 875, 895
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 7 cut(s) 101, 339, 563, 692, 710, 722, 1153
HpaII CCGG 2 cut(s) 927, 1121
HphI GGTGA 4 cut(s) 658, 761, 964, 1003
Hpy166II GTNNAC 2 cut(s) 520, 1063
Hpy188I TCNGA 8 cut(s) 124, 427, 484, 580, 703, 715, 727, 1115
Hpy188III TCNNGA 5 cut(s) 98, 201, 620, 622, 1082
Hpy8I GTNNAC 2 cut(s) 520, 1063
HpyAV CCTTC 9 cut(s) 241, 418, 471, 640, 694, 798, 928, 940, 1079
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 3 cut(s) 192, 516, 582
HpyCH4V TGCA 2 cut(s) 21, 1149
HpyF3I CTNAG 4 cut(s) 833, 1019, 1134, 1160
HpySE526I ACGT 3 cut(s) 192, 516, 582
Hsp92I GRCGYC 6 cut(s) 486, 522, 555, 582, 717, 924
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 6 cut(s) 610, 781, 851, 860, 875, 895
Ksp22I TGATCA 1 cut(s) 1141
Kzo9I GATC 1 cut(s) 1141
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 3 cut(s) 597, 686, 892
Lsp1109I GCAGC 3 cut(s) 390, 393, 795
LweI GCATC 1 cut(s) 997
MaeII ACGT 3 cut(s) 192, 516, 582
MaeIII GTNAC 1 cut(s) 749
MalI GATC 1 cut(s) 1143
MbiI CCGCTC 2 cut(s) 681, 1073
MboI GATC 1 cut(s) 1141
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 3 cut(s) 204, 1097, 1124
MlyI GAGTC 5 cut(s) 110, 557, 686, 716, 1147
MmeI TCCRAC 6 cut(s) 102, 507, 603, 726, 738, 750
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 3 cut(s) 138, 207, 225
MspI CCGG 2 cut(s) 927, 1121
MspR9I CCNGG 6 cut(s) 760, 778, 928, 1067, 1091, 1121
MvaI CCWGG 4 cut(s) 760, 778, 1067, 1091
MvnI CGCG 4 cut(s) 862, 875, 884, 897
NciI CCSGG 2 cut(s) 928, 1121
NdeII GATC 1 cut(s) 1141
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 3 cut(s) 846, 915, 1051
NmeAIII GCCGAG 1 cut(s) 1063
NmuCI GTSAC 1 cut(s) 749
PaeR7I CTCGAG 1 cut(s) 620
PaqCI CACCTGC 1 cut(s) 808
PceI AGGCCT 1 cut(s) 1089
PciSI GCTCTTC 1 cut(s) 389
PcsI WCGNNNNNNNCGW 3 cut(s) 558, 711, 723
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 2 cut(s) 339, 710
PflFI GACNNNGTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 777
PleI GAGTC 5 cut(s) 109, 557, 686, 716, 1147
PpsI GAGTC 5 cut(s) 109, 557, 686, 716, 1147
Psp6I CCWGG 4 cut(s) 758, 776, 1065, 1089
PspEI GGTNACC 1 cut(s) 749
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 4 cut(s) 758, 776, 1065, 1089
PspN4I GGNNCC 3 cut(s) 846, 915, 1051
PspPI GGNCC 4 cut(s) 161, 914, 1050, 1093
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 2 cut(s) 180, 1064
RsaNI GTAC 2 cut(s) 179, 1063
SalI GTCGAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 3 cut(s) 138, 207, 225
Sau3AI GATC 1 cut(s) 1141
Sau96I GGNCC 4 cut(s) 161, 914, 1050, 1093
SchI GAGTC 5 cut(s) 110, 557, 686, 716, 1147
ScrFI CCNGG 6 cut(s) 760, 778, 928, 1067, 1091, 1121
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 1 cut(s) 997
Sfr274I CTCGAG 1 cut(s) 620
SgrDI CGTCGACG 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 443, 620
SmoI CTYRAG 2 cut(s) 443, 620
Sse9I AATT 3 cut(s) 204, 1097, 1124
SseBI AGGCCT 1 cut(s) 1089
StuI AGGCCT 1 cut(s) 1089
StyD4I CCNGG 6 cut(s) 758, 776, 926, 1065, 1089, 1119
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 3 cut(s) 195, 519, 585
TaqI TCGA 8 cut(s) 10, 97, 200, 519, 561, 621, 690, 813
TasI AATT 3 cut(s) 204, 1097, 1124
TatI WGTACW 1 cut(s) 178
TauI GCSGC 7 cut(s) 378, 860, 884, 944, 1055, 1073, 1176
TfiI GAWTC 2 cut(s) 339, 710
Tru1I TTAA 3 cut(s) 138, 207, 225
Tru9I TTAA 3 cut(s) 138, 207, 225
TscAI CASTG 3 cut(s) 366, 1063, 1151
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 3 cut(s) 378, 381, 783
Tsp45I GTSAC 1 cut(s) 749
TspRI CASTG 3 cut(s) 366, 1063, 1151
Tth111I GACNNNGTC 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 1103
XhoI CTCGAG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 629
ZraI GACGTC 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.