Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1076200.v1.1 MD14G1144800.v1.1 |
| prunus_persica | Prupe.5G139200_v2.0.a1 |
| pyrus_communis | pycom06g11950 pycom14g12030 |
| rosa_chinensis | RchiOBHm_Chr7g0188361 |
| rosa_laevigata | RLG00000004699 RLG00000004705 |
| rosa_multiflora | Rmu_co8471191.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00266450 |
| rosa_rugosa | Rorug06G0490100 |
| rosa_samantha | Rh7BG096300 Rh7CG096800 |
| rosa_wichuraiana | Rw7G008170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1239 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 137 |
| AccI | GTMKAC | 1 cut(s) | 596 |
| AccII | CGCG | 3 cut(s) | 192, 866, 911 |
| AciI | CCGC | 5 cut(s) | 366, 699, 756, 911, 1188 |
| AclWI | GGATC | 1 cut(s) | 1287 |
| AcsI | RAATTY | 4 cut(s) | 675, 1011, 1233, 1412 |
| AcuI | CTGAAG | 1 cut(s) | 96 |
| AcyI | GRCGYC | 1 cut(s) | 117 |
| AfaI | GTAC | 3 cut(s) | 470, 977, 1063 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 389 |
| AflIII | ACRYGT | 2 cut(s) | 741, 972 |
| AjnI | CCWGG | 1 cut(s) | 720 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1388, 1420 |
| AluBI | AGCT | 9 cut(s) | 67, 91, 151, 264, 379, 400, 852, 1029, 1331 |
| AluI | AGCT | 9 cut(s) | 67, 91, 151, 264, 379, 400, 852, 1029, 1331 |
| Alw21I | GWGCWC | 3 cut(s) | 69, 631, 1031 |
| Alw26I | GTCTC | 6 cut(s) | 145, 182, 293, 377, 466, 984 |
| AlwI | GGATC | 1 cut(s) | 1287 |
| Ama87I | CYCGRG | 2 cut(s) | 68, 1160 |
| AoxI | GGCC | 6 cut(s) | 35, 72, 391, 454, 481, 602 |
| ApoI | RAATTY | 4 cut(s) | 675, 1011, 1233, 1412 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 876, 1014 |
| AspLEI | GCGC | 1 cut(s) | 194 |
| AspS9I | GGNCC | 2 cut(s) | 603, 1165 |
| AsuHPI | GGTGA | 1 cut(s) | 625 |
| AvaI | CYCGRG | 2 cut(s) | 68, 1160 |
| AvaII | GGWCC | 1 cut(s) | 1165 |
| BanII | GRGCYC | 3 cut(s) | 69, 1006, 1031 |
| BbsI | GAAGAC | 3 cut(s) | 217, 499, 709 |
| Bbv12I | GWGCWC | 3 cut(s) | 69, 631, 1031 |
| BccI | CCATC | 2 cut(s) | 327, 584 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 728, 762 |
| BciT130I | CCWGG | 1 cut(s) | 722 |
| BcoDI | GTCTC | 6 cut(s) | 145, 182, 293, 377, 466, 984 |
| BisI | GCNGC | 1 cut(s) | 912 |
| BlsI | GCNGC | 1 cut(s) | 913 |
| Bme1390I | CCNGG | 1 cut(s) | 722 |
| Bme18I | GGWCC | 1 cut(s) | 1165 |
| BmeT110I | CYCGRG | 2 cut(s) | 68, 1160 |
| BmgT120I | GGNCC | 2 cut(s) | 603, 1165 |
| BmiI | GGNNCC | 2 cut(s) | 1166, 1420 |
| BmrFI | CCNGG | 1 cut(s) | 722 |
| BmrI | ACTGGG | 1 cut(s) | 567 |
| BmsI | GCATC | 4 cut(s) | 552, 558, 760, 876 |
| BmuI | ACTGGG | 1 cut(s) | 567 |
| BoxI | GACNNNNGTC | 1 cut(s) | 620 |
| BpiI | GAAGAC | 3 cut(s) | 217, 499, 709 |
| BpmI | CTGGAG | 1 cut(s) | 359 |
| BpuEI | CTTGAG | 2 cut(s) | 127, 1015 |
| BsaHI | GRCGYC | 1 cut(s) | 117 |
| BsaI | GGTCTC | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 3 cut(s) | 721, 1159, 1183 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 251, 281, 323, 353, 962, 992 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 389 |
| Bse1I | ACTGG | 1 cut(s) | 562 |
| Bse3DI | GCAATG | 1 cut(s) | 921 |
| BseBI | CCWGG | 1 cut(s) | 722 |
| BseDI | CCNNGG | 3 cut(s) | 721, 1159, 1183 |
| BseGI | GGATG | 4 cut(s) | 567, 718, 772, 1342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 389 |
| BseMI | GCAATG | 1 cut(s) | 921 |
| BseMII | CTCAG | 3 cut(s) | 218, 598, 1305 |
| BseNI | ACTGG | 1 cut(s) | 562 |
| BseRI | GAGGAG | 2 cut(s) | 143, 256 |
| Bsh1236I | CGCG | 3 cut(s) | 192, 866, 911 |
| Bsh1285I | CGRYCG | 1 cut(s) | 370 |
| BshFI | GGCC | 6 cut(s) | 37, 74, 393, 456, 483, 604 |
| BsiEI | CGRYCG | 1 cut(s) | 370 |
| BsiHKAI | GWGCWC | 3 cut(s) | 69, 631, 1031 |
| BsiHKCI | CYCGRG | 2 cut(s) | 68, 1160 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BslFI | GGGAC | 1 cut(s) | 82 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 389 |
| BsmAI | GTCTC | 6 cut(s) | 145, 182, 293, 377, 466, 984 |
| BsmBI | CGTCTC | 3 cut(s) | 145, 377, 466 |
| BsmFI | GGGAC | 1 cut(s) | 82 |
| BsmI | GAATGC | 2 cut(s) | 946, 964 |
| BsnI | GGCC | 6 cut(s) | 37, 74, 393, 456, 483, 604 |
| Bso31I | GGTCTC | 1 cut(s) | 182 |
| BsoBI | CYCGRG | 2 cut(s) | 68, 1160 |
| Bsp1286I | GDGCHC | 4 cut(s) | 69, 631, 1006, 1031 |
| Bsp143I | GATC | 3 cut(s) | 735, 1279, 1364 |
| Bsp19I | CCATGG | 1 cut(s) | 1183 |
| BspACI | CCGC | 5 cut(s) | 366, 699, 756, 911, 1188 |
| BspANI | GGCC | 6 cut(s) | 37, 74, 393, 456, 483, 604 |
| BspCNI | CTCAG | 3 cut(s) | 217, 597, 1306 |
| BspFNI | CGCG | 3 cut(s) | 192, 866, 911 |
| BspLI | GGNNCC | 2 cut(s) | 1166, 1420 |
| BspPI | GGATC | 1 cut(s) | 1287 |
| BspTNI | GGTCTC | 1 cut(s) | 182 |
| BsrDI | GCAATG | 1 cut(s) | 921 |
| BsrI | ACTGG | 1 cut(s) | 562 |
| BssECI | CCNNGG | 3 cut(s) | 721, 1159, 1183 |
| BssMI | GATC | 3 cut(s) | 735, 1279, 1364 |
| BssNI | GRCGYC | 1 cut(s) | 117 |
| BssT1I | CCWWGG | 1 cut(s) | 1183 |
| Bst2UI | CCWGG | 1 cut(s) | 722 |
| Bst4CI | ACNGT | 1 cut(s) | 176 |
| Bst6I | CTCTTC | 1 cut(s) | 359 |
| BstACI | GRCGYC | 1 cut(s) | 117 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 920 |
| BstC8I | GCNNGC | 7 cut(s) | 39, 149, 232, 364, 758, 835, 1381 |
| BstDEI | CTNAG | 4 cut(s) | 121, 204, 584, 1314 |
| BstDSI | CCRYGG | 1 cut(s) | 1183 |
| BstF5I | GGATG | 4 cut(s) | 567, 718, 772, 1342 |
| BstFNI | CGCG | 3 cut(s) | 192, 866, 911 |
| BstHHI | GCGC | 1 cut(s) | 194 |
| BstKTI | GATC | 3 cut(s) | 738, 1282, 1367 |
| BstMAI | GTCTC | 6 cut(s) | 145, 182, 293, 377, 466, 984 |
| BstMBI | GATC | 3 cut(s) | 735, 1279, 1364 |
| BstMCI | CGRYCG | 1 cut(s) | 370 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 189, 635, 911, 920, 1369 |
| BstNI | CCWGG | 1 cut(s) | 722 |
| BstNSI | RCATGY | 6 cut(s) | 366, 745, 942, 976, 1179, 1383 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 620 |
| BstSCI | CCNGG | 1 cut(s) | 720 |
| BstUI | CGCG | 3 cut(s) | 192, 866, 911 |
| BstV2I | GAAGAC | 3 cut(s) | 217, 499, 709 |
| BstX2I | RGATCY | 1 cut(s) | 1279 |
| BstYI | RGATCY | 1 cut(s) | 1279 |
| BsuRI | GGCC | 6 cut(s) | 37, 74, 393, 456, 483, 604 |
| BtgI | CCRYGG | 1 cut(s) | 1183 |
| BtgZI | GCGATG | 1 cut(s) | 535 |
| BtsCI | GGATG | 4 cut(s) | 567, 718, 772, 1342 |
| BtsI | GCAGTG | 1 cut(s) | 633 |
| BtsIMutI | CAGTG | 4 cut(s) | 592, 631, 633, 957 |
| Cac8I | GCNNGC | 7 cut(s) | 39, 149, 232, 364, 758, 835, 1381 |
| CfoI | GCGC | 1 cut(s) | 194 |
| Cfr13I | GGNCC | 2 cut(s) | 603, 1165 |
| CseI | GACGC | 5 cut(s) | 106, 627, 872, 917, 1113 |
| Csp6I | GTAC | 3 cut(s) | 469, 976, 1062 |
| CviQI | GTAC | 3 cut(s) | 469, 976, 1062 |
| DdeI | CTNAG | 4 cut(s) | 121, 204, 584, 1314 |
| DpnI | GATC | 3 cut(s) | 737, 1281, 1366 |
| DpnII | GATC | 3 cut(s) | 735, 1279, 1364 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 137 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 137 |
| Eam1104I | CTCTTC | 1 cut(s) | 359 |
| EarI | CTCTTC | 1 cut(s) | 359 |
| Ecl136II | GAGCTC | 2 cut(s) | 67, 1029 |
| Eco130I | CCWWGG | 1 cut(s) | 1183 |
| Eco24I | GRGCYC | 3 cut(s) | 69, 1006, 1031 |
| Eco31I | GGTCTC | 1 cut(s) | 182 |
| Eco47I | GGWCC | 1 cut(s) | 1165 |
| Eco53kI | GAGCTC | 2 cut(s) | 67, 1029 |
| Eco57I | CTGAAG | 1 cut(s) | 96 |
| Eco88I | CYCGRG | 2 cut(s) | 68, 1160 |
| EcoICRI | GAGCTC | 2 cut(s) | 67, 1029 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1165 |
| EcoRII | CCWGG | 1 cut(s) | 720 |
| EcoT14I | CCWWGG | 1 cut(s) | 1183 |
| EcoT38I | GRGCYC | 3 cut(s) | 69, 1006, 1031 |
| ErhI | CCWWGG | 1 cut(s) | 1183 |
| Esp3I | CGTCTC | 3 cut(s) | 145, 377, 466 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 267, 299 |
| FaqI | GGGAC | 1 cut(s) | 82 |
| FauI | CCCGC | 2 cut(s) | 692, 749 |
| FauNDI | CATATG | 1 cut(s) | 1358 |
| FblI | GTMKAC | 1 cut(s) | 596 |
| Fnu4HI | GCNGC | 1 cut(s) | 912 |
| FokI | GGATG | 4 cut(s) | 574, 725, 779, 1329 |
| FriOI | GRGCYC | 3 cut(s) | 69, 1006, 1031 |
| Fsp4HI | GCNGC | 1 cut(s) | 912 |
| GlaI | GCGC | 1 cut(s) | 193 |
| GluI | GCNGC | 1 cut(s) | 912 |
| GsuI | CTGGAG | 1 cut(s) | 359 |
| HaeIII | GGCC | 6 cut(s) | 37, 74, 393, 456, 483, 604 |
| HapII | CCGG | 1 cut(s) | 329 |
| HgaI | GACGC | 5 cut(s) | 106, 627, 872, 917, 1113 |
| HhaI | GCGC | 1 cut(s) | 194 |
| Hin1I | GRCGYC | 1 cut(s) | 117 |
| Hin6I | GCGC | 1 cut(s) | 192 |
| HinP1I | GCGC | 1 cut(s) | 192 |
| HincII | GTYRAC | 1 cut(s) | 411 |
| HindII | GTYRAC | 1 cut(s) | 411 |
| HinfI | GANTC | 4 cut(s) | 131, 208, 491, 1085 |
| HpaII | CCGG | 1 cut(s) | 329 |
| HphI | GGTGA | 1 cut(s) | 625 |
| Hpy166II | GTNNAC | 4 cut(s) | 411, 541, 597, 1044 |
| Hpy188I | TCNGA | 3 cut(s) | 207, 425, 1231 |
| Hpy188III | TCNNGA | 4 cut(s) | 881, 1007, 1032, 1346 |
| Hpy8I | GTNNAC | 4 cut(s) | 411, 541, 597, 1044 |
| Hpy99I | CGWCG | 2 cut(s) | 309, 312 |
| HpyAV | CCTTC | 3 cut(s) | 167, 352, 1420 |
| HpyCH4III | ACNGT | 1 cut(s) | 176 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 438 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 189, 635, 911, 920, 1369 |
| HpyF3I | CTNAG | 4 cut(s) | 121, 204, 584, 1314 |
| HpySE526I | ACGT | 2 cut(s) | 304, 438 |
| Hsp92I | GRCGYC | 1 cut(s) | 117 |
| HspAI | GCGC | 1 cut(s) | 192 |
| Kzo9I | GATC | 3 cut(s) | 735, 1279, 1364 |
| LmnI | GCTCC | 2 cut(s) | 156, 269 |
| LweI | GCATC | 4 cut(s) | 552, 558, 760, 876 |
| MaeII | ACGT | 2 cut(s) | 304, 438 |
| MaeIII | GTNAC | 2 cut(s) | 613, 1150 |
| MalI | GATC | 3 cut(s) | 737, 1281, 1366 |
| MboI | GATC | 3 cut(s) | 735, 1279, 1364 |
| MboII | GAAGA | 7 cut(s) | 217, 235, 346, 499, 709, 967, 1274 |
| MflI | RGATCY | 1 cut(s) | 1279 |
| MhlI | GDGCHC | 4 cut(s) | 69, 631, 1006, 1031 |
| MluCI | AATT | 9 cut(s) | 6, 334, 675, 872, 890, 1011, 1233, 1297, 1412 |
| MlyI | GAGTC | 1 cut(s) | 125 |
| MmeI | TCCRAC | 1 cut(s) | 690 |
| MroXI | GAANNNNTTC | 2 cut(s) | 876, 1014 |
| MseI | TTAA | 2 cut(s) | 5, 1304 |
| MslI | CAYNNNNRTG | 2 cut(s) | 804, 1347 |
| MspI | CCGG | 1 cut(s) | 329 |
| MspR9I | CCNGG | 1 cut(s) | 722 |
| Mva1269I | GAATGC | 2 cut(s) | 946, 964 |
| MvaI | CCWGG | 1 cut(s) | 722 |
| MvnI | CGCG | 3 cut(s) | 192, 866, 911 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 189, 635, 911, 920, 1369 |
| NcoI | CCATGG | 1 cut(s) | 1183 |
| NdeI | CATATG | 1 cut(s) | 1358 |
| NdeII | GATC | 3 cut(s) | 735, 1279, 1364 |
| NlaIV | GGNNCC | 2 cut(s) | 1166, 1420 |
| NmeAIII | GCCGAG | 1 cut(s) | 159 |
| NmuCI | GTSAC | 2 cut(s) | 613, 1150 |
| NspI | RCATGY | 6 cut(s) | 366, 745, 942, 976, 1179, 1383 |
| PaeI | GCATGC | 2 cut(s) | 366, 1383 |
| PaeR7I | CTCGAG | 1 cut(s) | 68 |
| PciI | ACATGT | 2 cut(s) | 741, 972 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 135 |
| PctI | GAATGC | 2 cut(s) | 946, 964 |
| PdmI | GAANNNNTTC | 2 cut(s) | 876, 1014 |
| PfeI | GAWTC | 3 cut(s) | 208, 491, 1085 |
| PkrI | GCNGC | 1 cut(s) | 913 |
| PleI | GAGTC | 1 cut(s) | 125 |
| PpsI | GAGTC | 1 cut(s) | 125 |
| PpuMI | RGGWCCY | 1 cut(s) | 1165 |
| PscI | ACATGT | 2 cut(s) | 741, 972 |
| PshAI | GACNNNNGTC | 1 cut(s) | 620 |
| PsiI | TTATAA | 1 cut(s) | 1239 |
| Psp124BI | GAGCTC | 2 cut(s) | 69, 1031 |
| Psp5II | RGGWCCY | 1 cut(s) | 1165 |
| Psp6I | CCWGG | 1 cut(s) | 720 |
| PspGI | CCWGG | 1 cut(s) | 720 |
| PspN4I | GGNNCC | 2 cut(s) | 1166, 1420 |
| PspPI | GGNCC | 2 cut(s) | 603, 1165 |
| PspPPI | RGGWCCY | 1 cut(s) | 1165 |
| PspXI | VCTCGAGB | 1 cut(s) | 68 |
| PsuI | RGATCY | 1 cut(s) | 1279 |
| RsaI | GTAC | 3 cut(s) | 470, 977, 1063 |
| RsaNI | GTAC | 3 cut(s) | 469, 976, 1062 |
| RseI | CAYNNNNRTG | 2 cut(s) | 804, 1347 |
| SacI | GAGCTC | 2 cut(s) | 69, 1031 |
| SaqAI | TTAA | 2 cut(s) | 5, 1304 |
| SatI | GCNGC | 1 cut(s) | 912 |
| Sau3AI | GATC | 3 cut(s) | 735, 1279, 1364 |
| Sau96I | GGNCC | 2 cut(s) | 603, 1165 |
| SchI | GAGTC | 1 cut(s) | 125 |
| ScrFI | CCNGG | 1 cut(s) | 722 |
| SduI | GDGCHC | 4 cut(s) | 69, 631, 1006, 1031 |
| SfaNI | GCATC | 4 cut(s) | 552, 558, 760, 876 |
| Sfr274I | CTCGAG | 1 cut(s) | 68 |
| SinI | GGWCC | 1 cut(s) | 1165 |
| SlaI | CTCGAG | 1 cut(s) | 68 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 804, 1347 |
| SmlI | CTYRAG | 3 cut(s) | 68, 142, 1030 |
| SmoI | CTYRAG | 3 cut(s) | 68, 142, 1030 |
| SphI | GCATGC | 2 cut(s) | 366, 1383 |
| Sse9I | AATT | 9 cut(s) | 6, 334, 675, 872, 890, 1011, 1233, 1297, 1412 |
| SsiI | CCGC | 5 cut(s) | 366, 699, 756, 911, 1188 |
| SstI | GAGCTC | 2 cut(s) | 69, 1031 |
| StyD4I | CCNGG | 1 cut(s) | 720 |
| StyI | CCWWGG | 1 cut(s) | 1183 |
| TaaI | ACNGT | 1 cut(s) | 176 |
| TaiI | ACGT | 2 cut(s) | 307, 441 |
| TaqI | TCGA | 6 cut(s) | 10, 69, 510, 738, 775, 786 |
| TasI | AATT | 9 cut(s) | 6, 334, 675, 872, 890, 1011, 1233, 1297, 1412 |
| TatI | WGTACW | 3 cut(s) | 468, 975, 1061 |
| TauI | GCSGC | 1 cut(s) | 914 |
| TfiI | GAWTC | 3 cut(s) | 208, 491, 1085 |
| Tru1I | TTAA | 2 cut(s) | 5, 1304 |
| Tru9I | TTAA | 2 cut(s) | 5, 1304 |
| TscAI | CASTG | 4 cut(s) | 592, 631, 640, 957 |
| TseFI | GTSAC | 2 cut(s) | 613, 1150 |
| Tsp45I | GTSAC | 2 cut(s) | 613, 1150 |
| TspDTI | ATGAA | 7 cut(s) | 229, 289, 668, 1007, 1091, 1312, 1331 |
| TspRI | CASTG | 4 cut(s) | 592, 631, 640, 957 |
| VpaK11BI | GGWCC | 1 cut(s) | 1165 |
| XapI | RAATTY | 4 cut(s) | 675, 1011, 1233, 1412 |
| XceI | RCATGY | 6 cut(s) | 366, 745, 942, 976, 1179, 1383 |
| XhoI | CTCGAG | 1 cut(s) | 68 |
| XmiI | GTMKAC | 1 cut(s) | 596 |
| XmnI | GAANNNNTTC | 2 cut(s) | 876, 1014 |