Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1076200.v1.1 MD14G1144800.v1.1 |
| prunus_persica | Prupe.5G139200_v2.0.a1 |
| pyrus_communis | pycom06g11950 pycom14g12030 |
| rosa_chinensis | RchiOBHm_Chr7g0188361 |
| rosa_laevigata | RLG00000004699 RLG00000004705 |
| rosa_multiflora | Rmu_co8471191.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00266450 |
| rosa_rugosa | Rorug06G0490100 |
| rosa_samantha | Rh7BG096300 Rh7CG096800 |
| rosa_wichuraiana | Rw7G008170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 301 |
| AccII | CGCG | 2 cut(s) | 183, 1392 |
| AciI | CCGC | 7 cut(s) | 181, 357, 614, 638, 783, 980, 1462 |
| AclWI | GGATC | 1 cut(s) | 999 |
| AcoI | YGGCCR | 1 cut(s) | 624 |
| AcsI | RAATTY | 3 cut(s) | 173, 1110, 1697 |
| AcuI | CTGAAG | 2 cut(s) | 1572, 1622 |
| AcyI | GRCGYC | 1 cut(s) | 298 |
| AdeI | CACNNNGTG | 1 cut(s) | 1724 |
| AfaI | GTAC | 1 cut(s) | 461 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 360, 1640 |
| AflIII | ACRYGT | 2 cut(s) | 310, 1071 |
| AjiI | CACGTC | 2 cut(s) | 529, 1450 |
| AjnI | CCWGG | 4 cut(s) | 591, 626, 1257, 1657 |
| AluBI | AGCT | 7 cut(s) | 370, 391, 478, 1342, 1412, 1504, 1734 |
| AluI | AGCT | 7 cut(s) | 370, 391, 478, 1342, 1412, 1504, 1734 |
| Alw21I | GWGCWC | 2 cut(s) | 802, 1198 |
| Alw26I | GTCTC | 3 cut(s) | 538, 1470, 1739 |
| AlwI | GGATC | 1 cut(s) | 999 |
| AoxI | GGCC | 7 cut(s) | 166, 351, 382, 624, 629, 1238, 1551 |
| ApeKI | GCWGC | 2 cut(s) | 1086, 1412 |
| ApoI | RAATTY | 3 cut(s) | 173, 1110, 1697 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| AspLEI | GCGC | 2 cut(s) | 185, 1394 |
| AsuHPI | GGTGA | 2 cut(s) | 797, 1063 |
| BauI | CACGAG | 2 cut(s) | 290, 1350 |
| BbsI | GAAGAC | 1 cut(s) | 208 |
| Bbv12I | GWGCWC | 2 cut(s) | 802, 1198 |
| BbvI | GCAGC | 2 cut(s) | 1098, 1399 |
| BccI | CCATC | 6 cut(s) | 416, 611, 788, 917, 1584, 1676 |
| BceAI | ACGGC | 1 cut(s) | 181 |
| BciT130I | CCWGG | 4 cut(s) | 593, 628, 1259, 1659 |
| BclI | TGATCA | 1 cut(s) | 1357 |
| BcoDI | GTCTC | 3 cut(s) | 538, 1470, 1739 |
| BfaI | CTAG | 1 cut(s) | 1199 |
| BisI | GCNGC | 2 cut(s) | 1087, 1413 |
| BlsI | GCNGC | 2 cut(s) | 1088, 1414 |
| Bme1390I | CCNGG | 4 cut(s) | 593, 628, 1259, 1659 |
| BmgBI | CACGTC | 2 cut(s) | 529, 1450 |
| BmiI | GGNNCC | 1 cut(s) | 1542 |
| BmrFI | CCNGG | 4 cut(s) | 593, 628, 1259, 1659 |
| BmsI | GCATC | 3 cut(s) | 625, 903, 1601 |
| BpiI | GAAGAC | 1 cut(s) | 208 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 394, 426 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| BpuEI | CTTGAG | 1 cut(s) | 249 |
| BsaHI | GRCGYC | 1 cut(s) | 298 |
| BsaI | GGTCTC | 2 cut(s) | 538, 1470 |
| BsaJI | CCNNGG | 1 cut(s) | 1258 |
| BsaWI | WCCGGW | 1 cut(s) | 511 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 902, 932, 1278, 1308 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 360, 1640 |
| Bse1I | ACTGG | 1 cut(s) | 70 |
| BseBI | CCWGG | 4 cut(s) | 593, 628, 1259, 1659 |
| BseDI | CCNNGG | 1 cut(s) | 1258 |
| BseGI | GGATG | 5 cut(s) | 433, 622, 745, 799, 928 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 360, 1640 |
| BseNI | ACTGG | 1 cut(s) | 70 |
| BseRI | GAGGAG | 1 cut(s) | 1338 |
| BseXI | GCAGC | 2 cut(s) | 1098, 1399 |
| BseYI | CCCAGC | 1 cut(s) | 256 |
| BsgI | GTGCAG | 3 cut(s) | 890, 1105, 1297 |
| Bsh1236I | CGCG | 2 cut(s) | 183, 1392 |
| Bsh1285I | CGRYCG | 1 cut(s) | 361 |
| BshFI | GGCC | 7 cut(s) | 168, 353, 384, 626, 631, 1240, 1553 |
| BsiEI | CGRYCG | 1 cut(s) | 361 |
| BsiHKAI | GWGCWC | 2 cut(s) | 802, 1198 |
| BsiSI | CCGG | 3 cut(s) | 105, 320, 512 |
| BslFI | GGGAC | 3 cut(s) | 539, 596, 1237 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 360, 1640 |
| BsmAI | GTCTC | 3 cut(s) | 538, 1470, 1739 |
| BsmFI | GGGAC | 3 cut(s) | 539, 596, 1237 |
| BsmI | GAATGC | 3 cut(s) | 667, 982, 1063 |
| BsnI | GGCC | 7 cut(s) | 168, 353, 384, 626, 631, 1240, 1553 |
| Bso31I | GGTCTC | 2 cut(s) | 538, 1470 |
| Bsp1286I | GDGCHC | 2 cut(s) | 802, 1198 |
| Bsp143I | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| BspACI | CCGC | 7 cut(s) | 181, 357, 614, 638, 783, 980, 1462 |
| BspANI | GGCC | 7 cut(s) | 168, 353, 384, 626, 631, 1240, 1553 |
| BspFNI | CGCG | 2 cut(s) | 183, 1392 |
| BspHI | TCATGA | 1 cut(s) | 1693 |
| BspLI | GGNNCC | 1 cut(s) | 1542 |
| BspPI | GGATC | 1 cut(s) | 999 |
| BspTNI | GGTCTC | 2 cut(s) | 538, 1470 |
| BsrI | ACTGG | 1 cut(s) | 70 |
| BssECI | CCNNGG | 1 cut(s) | 1258 |
| BssMI | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| BssNI | GRCGYC | 1 cut(s) | 298 |
| BssSI | CACGAG | 2 cut(s) | 290, 1350 |
| Bst2BI | CACGAG | 2 cut(s) | 290, 1350 |
| Bst2UI | CCWGG | 4 cut(s) | 593, 628, 1259, 1659 |
| Bst4CI | ACNGT | 2 cut(s) | 1019, 1705 |
| Bst6I | CTCTTC | 1 cut(s) | 1641 |
| BstACI | GRCGYC | 1 cut(s) | 298 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 950 |
| BstC8I | GCNNGC | 5 cut(s) | 223, 355, 612, 1276, 1506 |
| BstDEI | CTNAG | 2 cut(s) | 1498, 1791 |
| BstF5I | GGATG | 5 cut(s) | 433, 622, 745, 799, 928 |
| BstFNI | CGCG | 2 cut(s) | 183, 1392 |
| BstHHI | GCGC | 2 cut(s) | 185, 1394 |
| BstKTI | GATC | 5 cut(s) | 736, 994, 1068, 1360, 1377 |
| BstMAI | GTCTC | 3 cut(s) | 538, 1470, 1739 |
| BstMBI | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| BstMCI | CGRYCG | 1 cut(s) | 361 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 662, 941, 950, 1468 |
| BstNI | CCWGG | 4 cut(s) | 593, 628, 1259, 1659 |
| BstNSI | RCATGY | 2 cut(s) | 314, 1075 |
| BstSCI | CCNGG | 4 cut(s) | 591, 626, 1257, 1657 |
| BstUI | CGCG | 2 cut(s) | 183, 1392 |
| BstV1I | GCAGC | 2 cut(s) | 1098, 1399 |
| BstV2I | GAAGAC | 1 cut(s) | 208 |
| BsuRI | GGCC | 7 cut(s) | 168, 353, 384, 626, 631, 1240, 1553 |
| BtrI | CACGTC | 2 cut(s) | 529, 1450 |
| BtsCI | GGATG | 5 cut(s) | 433, 622, 745, 799, 928 |
| BtsIMutI | CAGTG | 1 cut(s) | 1701 |
| Cac8I | GCNNGC | 5 cut(s) | 223, 355, 612, 1276, 1506 |
| CciI | TCATGA | 1 cut(s) | 1693 |
| CfoI | GCGC | 2 cut(s) | 185, 1394 |
| CseI | GACGC | 1 cut(s) | 593 |
| Csp6I | GTAC | 1 cut(s) | 460 |
| CviQI | GTAC | 1 cut(s) | 460 |
| DdeI | CTNAG | 2 cut(s) | 1498, 1791 |
| DpnI | GATC | 5 cut(s) | 735, 993, 1067, 1359, 1376 |
| DpnII | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| DraIII | CACNNNGTG | 1 cut(s) | 1724 |
| EaeI | YGGCCR | 1 cut(s) | 624 |
| Eam1104I | CTCTTC | 1 cut(s) | 1641 |
| EarI | CTCTTC | 1 cut(s) | 1641 |
| Eco147I | AGGCCT | 2 cut(s) | 353, 631 |
| Eco31I | GGTCTC | 2 cut(s) | 538, 1470 |
| Eco57I | CTGAAG | 2 cut(s) | 1572, 1622 |
| EcoRI | GAATTC | 1 cut(s) | 1697 |
| EcoRII | CCWGG | 4 cut(s) | 591, 626, 1257, 1657 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 317, 349, 1774 |
| FaqI | GGGAC | 3 cut(s) | 539, 596, 1237 |
| FauI | CCCGC | 2 cut(s) | 188, 973 |
| FbaI | TGATCA | 1 cut(s) | 1357 |
| Fnu4HI | GCNGC | 2 cut(s) | 1087, 1413 |
| FokI | GGATG | 5 cut(s) | 440, 629, 752, 806, 935 |
| Fsp4HI | GCNGC | 2 cut(s) | 1087, 1413 |
| FspBI | CTAG | 1 cut(s) | 1199 |
| GlaI | GCGC | 2 cut(s) | 184, 1393 |
| GluI | GCNGC | 2 cut(s) | 1087, 1413 |
| GsaI | CCCAGC | 1 cut(s) | 260 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| HaeIII | GGCC | 7 cut(s) | 168, 353, 384, 626, 631, 1240, 1553 |
| HapII | CCGG | 3 cut(s) | 105, 320, 512 |
| HgaI | GACGC | 1 cut(s) | 593 |
| HhaI | GCGC | 2 cut(s) | 185, 1394 |
| Hin1I | GRCGYC | 1 cut(s) | 298 |
| Hin6I | GCGC | 2 cut(s) | 183, 1392 |
| HinP1I | GCGC | 2 cut(s) | 183, 1392 |
| HindIII | AAGCTT | 1 cut(s) | 1340 |
| HinfI | GANTC | 8 cut(s) | 6, 508, 568, 703, 938, 1184, 1556, 1644 |
| HpaII | CCGG | 3 cut(s) | 105, 320, 512 |
| HphI | GGTGA | 2 cut(s) | 797, 1063 |
| Hpy166II | GTNNAC | 4 cut(s) | 563, 1297, 1612, 1718 |
| Hpy188I | TCNGA | 8 cut(s) | 416, 576, 660, 1189, 1213, 1330, 1494, 1780 |
| Hpy188III | TCNNGA | 7 cut(s) | 266, 524, 737, 1106, 1118, 1648, 1694 |
| Hpy8I | GTNNAC | 4 cut(s) | 563, 1297, 1612, 1718 |
| Hpy99I | CGWCG | 2 cut(s) | 300, 303 |
| HpyAV | CCTTC | 4 cut(s) | 822, 993, 1214, 1391 |
| HpyCH4III | ACNGT | 2 cut(s) | 1019, 1705 |
| HpyCH4IV | ACGT | 3 cut(s) | 298, 528, 1449 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 662, 941, 950, 1468 |
| HpyF3I | CTNAG | 2 cut(s) | 1498, 1791 |
| HpySE526I | ACGT | 3 cut(s) | 298, 528, 1449 |
| Hsp92I | GRCGYC | 1 cut(s) | 298 |
| HspAI | GCGC | 2 cut(s) | 183, 1392 |
| Ksp22I | TGATCA | 1 cut(s) | 1357 |
| Kzo9I | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| LmnI | GCTCC | 2 cut(s) | 475, 1754 |
| Lsp1109I | GCAGC | 2 cut(s) | 1098, 1399 |
| LweI | GCATC | 3 cut(s) | 625, 903, 1601 |
| MaeI | CTAG | 1 cut(s) | 1199 |
| MaeII | ACGT | 3 cut(s) | 298, 528, 1449 |
| MaeIII | GTNAC | 6 cut(s) | 39, 785, 873, 1118, 1141, 1249 |
| MalI | GATC | 5 cut(s) | 735, 993, 1067, 1359, 1376 |
| MboI | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| MboII | GAAGA | 6 cut(s) | 208, 226, 712, 1066, 1628, 1663 |
| MhlI | GDGCHC | 2 cut(s) | 802, 1198 |
| MluCI | AATT | 8 cut(s) | 46, 173, 503, 577, 1110, 1535, 1697, 1758 |
| MlyI | GAGTC | 3 cut(s) | 577, 932, 1565 |
| MmeI | TCCRAC | 2 cut(s) | 273, 900 |
| MroXI | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| MseI | TTAA | 2 cut(s) | 348, 930 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1037, 1581, 1597 |
| MspI | CCGG | 3 cut(s) | 105, 320, 512 |
| MspR9I | CCNGG | 4 cut(s) | 593, 628, 1259, 1659 |
| Mva1269I | GAATGC | 3 cut(s) | 667, 982, 1063 |
| MvaI | CCWGG | 4 cut(s) | 593, 628, 1259, 1659 |
| MvnI | CGCG | 2 cut(s) | 183, 1392 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 662, 941, 950, 1468 |
| NdeII | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| NlaIV | GGNNCC | 1 cut(s) | 1542 |
| NmeAIII | GCCGAG | 2 cut(s) | 920, 1579 |
| NmuCI | GTSAC | 4 cut(s) | 785, 873, 1118, 1249 |
| NspI | RCATGY | 2 cut(s) | 314, 1075 |
| PagI | TCATGA | 1 cut(s) | 1693 |
| PceI | AGGCCT | 2 cut(s) | 353, 631 |
| PciI | ACATGT | 2 cut(s) | 310, 1071 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 525 |
| PctI | GAATGC | 3 cut(s) | 667, 982, 1063 |
| PdmI | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| PfeI | GAWTC | 5 cut(s) | 6, 508, 703, 1184, 1644 |
| PflFI | GACNNNGTC | 1 cut(s) | 530 |
| PkrI | GCNGC | 2 cut(s) | 1088, 1414 |
| PleI | GAGTC | 3 cut(s) | 576, 932, 1564 |
| PpsI | GAGTC | 3 cut(s) | 576, 932, 1564 |
| PscI | ACATGT | 2 cut(s) | 310, 1071 |
| Psp6I | CCWGG | 4 cut(s) | 591, 626, 1257, 1657 |
| PspFI | CCCAGC | 1 cut(s) | 256 |
| PspGI | CCWGG | 4 cut(s) | 591, 626, 1257, 1657 |
| PspN4I | GGNNCC | 1 cut(s) | 1542 |
| PsyI | GACNNNGTC | 1 cut(s) | 530 |
| RsaI | GTAC | 1 cut(s) | 461 |
| RsaNI | GTAC | 1 cut(s) | 460 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1037, 1581, 1597 |
| SaqAI | TTAA | 2 cut(s) | 348, 930 |
| SatI | GCNGC | 2 cut(s) | 1087, 1413 |
| Sau3AI | GATC | 5 cut(s) | 733, 991, 1065, 1357, 1374 |
| SchI | GAGTC | 3 cut(s) | 577, 932, 1565 |
| ScrFI | CCNGG | 4 cut(s) | 593, 628, 1259, 1659 |
| SduI | GDGCHC | 2 cut(s) | 802, 1198 |
| SfaNI | GCATC | 3 cut(s) | 625, 903, 1601 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1037, 1581, 1597 |
| SmlI | CTYRAG | 1 cut(s) | 264 |
| SmoI | CTYRAG | 1 cut(s) | 264 |
| Sse9I | AATT | 8 cut(s) | 46, 173, 503, 577, 1110, 1535, 1697, 1758 |
| SseBI | AGGCCT | 2 cut(s) | 353, 631 |
| SsiI | CCGC | 7 cut(s) | 181, 357, 614, 638, 783, 980, 1462 |
| SspMI | CTAG | 1 cut(s) | 1199 |
| StuI | AGGCCT | 2 cut(s) | 353, 631 |
| StyD4I | CCNGG | 4 cut(s) | 591, 626, 1257, 1657 |
| TaaI | ACNGT | 2 cut(s) | 1019, 1705 |
| TaiI | ACGT | 3 cut(s) | 301, 531, 1452 |
| TaqI | TCGA | 6 cut(s) | 171, 802, 1068, 1107, 1377, 1559 |
| TasI | AATT | 8 cut(s) | 46, 173, 503, 577, 1110, 1535, 1697, 1758 |
| TatI | WGTACW | 1 cut(s) | 459 |
| TfiI | GAWTC | 5 cut(s) | 6, 508, 703, 1184, 1644 |
| Tru1I | TTAA | 2 cut(s) | 348, 930 |
| Tru9I | TTAA | 2 cut(s) | 348, 930 |
| TscAI | CASTG | 1 cut(s) | 1708 |
| TseFI | GTSAC | 4 cut(s) | 785, 873, 1118, 1249 |
| TseI | GCWGC | 2 cut(s) | 1086, 1412 |
| Tsp45I | GTSAC | 4 cut(s) | 785, 873, 1118, 1249 |
| TspRI | CASTG | 1 cut(s) | 1708 |
| Tth111I | GACNNNGTC | 1 cut(s) | 530 |
| XapI | RAATTY | 3 cut(s) | 173, 1110, 1697 |
| XceI | RCATGY | 2 cut(s) | 314, 1075 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1655 |
| XmnI | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| XspI | CTAG | 1 cut(s) | 1199 |
| ZraI | GACGTC | 1 cut(s) | 299 |