Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1076200.v1.1 MD14G1144800.v1.1 |
| prunus_persica | Prupe.5G139200_v2.0.a1 |
| pyrus_communis | pycom06g11950 pycom14g12030 |
| rosa_chinensis | RchiOBHm_Chr7g0188361 |
| rosa_laevigata | RLG00000004699 RLG00000004705 |
| rosa_multiflora | Rmu_co8471191.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00266450 |
| rosa_rugosa | Rorug06G0490100 |
| rosa_samantha | Rh7BG096300 Rh7CG096800 |
| rosa_wichuraiana | Rw7G008170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 301 |
| AccII | CGCG | 1 cut(s) | 183 |
| AclWI | GGATC | 1 cut(s) | 999 |
| AcoI | YGGCCR | 1 cut(s) | 624 |
| AcsI | RAATTY | 2 cut(s) | 173, 1110 |
| AcyI | GRCGYC | 1 cut(s) | 298 |
| AfaI | GTAC | 1 cut(s) | 461 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 360, 972 |
| AflIII | ACRYGT | 2 cut(s) | 310, 1071 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 532 |
| AjiI | CACGTC | 1 cut(s) | 529 |
| AjnI | CCWGG | 3 cut(s) | 591, 626, 1257 |
| AluBI | AGCT | 4 cut(s) | 370, 391, 478, 919 |
| AluI | AGCT | 4 cut(s) | 370, 391, 478, 919 |
| Alw21I | GWGCWC | 2 cut(s) | 802, 1198 |
| Alw26I | GTCTC | 2 cut(s) | 263, 1031 |
| AlwI | GGATC | 1 cut(s) | 999 |
| AoxI | GGCC | 6 cut(s) | 166, 351, 382, 624, 629, 1238 |
| ApeKI | GCWGC | 1 cut(s) | 916 |
| ApoI | RAATTY | 2 cut(s) | 173, 1110 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| AspLEI | GCGC | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 3 cut(s) | 797, 1063, 1100 |
| BauI | CACGAG | 1 cut(s) | 290 |
| BbsI | GAAGAC | 1 cut(s) | 208 |
| Bbv12I | GWGCWC | 2 cut(s) | 802, 1198 |
| BbvI | GCAGC | 1 cut(s) | 928 |
| BccI | CCATC | 3 cut(s) | 611, 788, 917 |
| BceAI | ACGGC | 1 cut(s) | 181 |
| BciT130I | CCWGG | 3 cut(s) | 593, 628, 1259 |
| BciVI | GTATCC | 1 cut(s) | 973 |
| BcoDI | GTCTC | 2 cut(s) | 263, 1031 |
| BfaI | CTAG | 3 cut(s) | 920, 1199, 1300 |
| BfuI | GTATCC | 1 cut(s) | 973 |
| BisI | GCNGC | 1 cut(s) | 917 |
| BlsI | GCNGC | 1 cut(s) | 918 |
| Bme1390I | CCNGG | 3 cut(s) | 593, 628, 1259 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 532 |
| BmgBI | CACGTC | 1 cut(s) | 529 |
| BmrFI | CCNGG | 3 cut(s) | 593, 628, 1259 |
| BmsI | GCATC | 2 cut(s) | 625, 903 |
| BpiI | GAAGAC | 1 cut(s) | 208 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 260, 292, 394, 426 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| BpuEI | CTTGAG | 1 cut(s) | 249 |
| BsaHI | GRCGYC | 1 cut(s) | 298 |
| BsaI | GGTCTC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 1 cut(s) | 1258 |
| BsaWI | WCCGGW | 1 cut(s) | 511 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1278 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 360, 972 |
| Bse1I | ACTGG | 1 cut(s) | 70 |
| BseBI | CCWGG | 3 cut(s) | 593, 628, 1259 |
| BseDI | CCNNGG | 1 cut(s) | 1258 |
| BseGI | GGATG | 4 cut(s) | 433, 622, 745, 799 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 360, 972 |
| BseMII | CTCAG | 1 cut(s) | 671 |
| BseNI | ACTGG | 1 cut(s) | 70 |
| BseXI | GCAGC | 1 cut(s) | 928 |
| BsgI | GTGCAG | 1 cut(s) | 890 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| Bsh1285I | CGRYCG | 1 cut(s) | 361 |
| BshFI | GGCC | 6 cut(s) | 168, 353, 384, 626, 631, 1240 |
| BsiEI | CGRYCG | 1 cut(s) | 361 |
| BsiHKAI | GWGCWC | 2 cut(s) | 802, 1198 |
| BsiSI | CCGG | 3 cut(s) | 105, 320, 512 |
| BslFI | GGGAC | 3 cut(s) | 539, 596, 1237 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 360, 972 |
| BsmAI | GTCTC | 2 cut(s) | 263, 1031 |
| BsmBI | CGTCTC | 1 cut(s) | 1031 |
| BsmFI | GGGAC | 3 cut(s) | 539, 596, 1237 |
| BsmI | GAATGC | 3 cut(s) | 667, 982, 1063 |
| BsnI | GGCC | 6 cut(s) | 168, 353, 384, 626, 631, 1240 |
| Bso31I | GGTCTC | 1 cut(s) | 263 |
| Bsp1286I | GDGCHC | 2 cut(s) | 802, 1198 |
| Bsp143I | GATC | 3 cut(s) | 733, 991, 1065 |
| BspANI | GGCC | 6 cut(s) | 168, 353, 384, 626, 631, 1240 |
| BspCNI | CTCAG | 1 cut(s) | 670 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspPI | GGATC | 1 cut(s) | 999 |
| BspTNI | GGTCTC | 1 cut(s) | 263 |
| BsrI | ACTGG | 1 cut(s) | 70 |
| BssECI | CCNNGG | 1 cut(s) | 1258 |
| BssMI | GATC | 3 cut(s) | 733, 991, 1065 |
| BssNI | GRCGYC | 1 cut(s) | 298 |
| BssSI | CACGAG | 1 cut(s) | 290 |
| Bst2BI | CACGAG | 1 cut(s) | 290 |
| Bst2UI | CCWGG | 3 cut(s) | 593, 628, 1259 |
| Bst4CI | ACNGT | 1 cut(s) | 37 |
| BstACI | GRCGYC | 1 cut(s) | 298 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 950 |
| BstC8I | GCNNGC | 4 cut(s) | 223, 355, 612, 1276 |
| BstDEI | CTNAG | 1 cut(s) | 657 |
| BstF5I | GGATG | 4 cut(s) | 433, 622, 745, 799 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstHHI | GCGC | 1 cut(s) | 185 |
| BstKTI | GATC | 3 cut(s) | 736, 994, 1068 |
| BstMAI | GTCTC | 2 cut(s) | 263, 1031 |
| BstMBI | GATC | 3 cut(s) | 733, 991, 1065 |
| BstMCI | CGRYCG | 1 cut(s) | 361 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 552, 662, 941, 950 |
| BstNI | CCWGG | 3 cut(s) | 593, 628, 1259 |
| BstNSI | RCATGY | 3 cut(s) | 314, 972, 1075 |
| BstSCI | CCNGG | 3 cut(s) | 591, 626, 1257 |
| BstUI | CGCG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 1 cut(s) | 928 |
| BstV2I | GAAGAC | 1 cut(s) | 208 |
| BsuI | GTATCC | 1 cut(s) | 973 |
| BsuRI | GGCC | 6 cut(s) | 168, 353, 384, 626, 631, 1240 |
| BtrI | CACGTC | 1 cut(s) | 529 |
| BtsCI | GGATG | 4 cut(s) | 433, 622, 745, 799 |
| Cac8I | GCNNGC | 4 cut(s) | 223, 355, 612, 1276 |
| CfoI | GCGC | 1 cut(s) | 185 |
| CseI | GACGC | 1 cut(s) | 593 |
| Csp6I | GTAC | 1 cut(s) | 460 |
| CviQI | GTAC | 1 cut(s) | 460 |
| DdeI | CTNAG | 1 cut(s) | 657 |
| DpnI | GATC | 3 cut(s) | 735, 993, 1067 |
| DpnII | GATC | 3 cut(s) | 733, 991, 1065 |
| DriI | GACNNNNNGTC | 1 cut(s) | 532 |
| EaeI | YGGCCR | 1 cut(s) | 624 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 532 |
| Eco147I | AGGCCT | 2 cut(s) | 353, 631 |
| Eco31I | GGTCTC | 1 cut(s) | 263 |
| EcoRII | CCWGG | 3 cut(s) | 591, 626, 1257 |
| Esp3I | CGTCTC | 1 cut(s) | 1031 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 317, 349 |
| FaqI | GGGAC | 3 cut(s) | 539, 596, 1237 |
| FauI | CCCGC | 3 cut(s) | 188, 548, 973 |
| Fnu4HI | GCNGC | 1 cut(s) | 917 |
| FokI | GGATG | 4 cut(s) | 440, 629, 752, 806 |
| Fsp4HI | GCNGC | 1 cut(s) | 917 |
| FspBI | CTAG | 3 cut(s) | 920, 1199, 1300 |
| GlaI | GCGC | 1 cut(s) | 184 |
| GluI | GCNGC | 1 cut(s) | 917 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| HaeIII | GGCC | 6 cut(s) | 168, 353, 384, 626, 631, 1240 |
| HapII | CCGG | 3 cut(s) | 105, 320, 512 |
| HgaI | GACGC | 1 cut(s) | 593 |
| HhaI | GCGC | 1 cut(s) | 185 |
| Hin1I | GRCGYC | 1 cut(s) | 298 |
| Hin6I | GCGC | 1 cut(s) | 183 |
| HinP1I | GCGC | 1 cut(s) | 183 |
| HinfI | GANTC | 6 cut(s) | 6, 508, 568, 703, 938, 1184 |
| HpaII | CCGG | 3 cut(s) | 105, 320, 512 |
| HphI | GGTGA | 3 cut(s) | 797, 1063, 1100 |
| Hpy166II | GTNNAC | 2 cut(s) | 563, 1297 |
| Hpy188I | TCNGA | 4 cut(s) | 576, 660, 1189, 1213 |
| Hpy188III | TCNNGA | 5 cut(s) | 266, 524, 737, 1106, 1118 |
| Hpy8I | GTNNAC | 2 cut(s) | 563, 1297 |
| Hpy99I | CGWCG | 2 cut(s) | 300, 303 |
| HpyAV | CCTTC | 4 cut(s) | 343, 822, 993, 1214 |
| HpyCH4III | ACNGT | 1 cut(s) | 37 |
| HpyCH4IV | ACGT | 3 cut(s) | 298, 528, 1092 |
| HpyCH4V | TGCA | 8 cut(s) | 51, 225, 671, 776, 871, 916, 986, 1009 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 552, 662, 941, 950 |
| HpyF3I | CTNAG | 1 cut(s) | 657 |
| HpySE526I | ACGT | 3 cut(s) | 298, 528, 1092 |
| Hsp92I | GRCGYC | 1 cut(s) | 298 |
| HspAI | GCGC | 1 cut(s) | 183 |
| Kzo9I | GATC | 3 cut(s) | 733, 991, 1065 |
| LmnI | GCTCC | 1 cut(s) | 475 |
| Lsp1109I | GCAGC | 1 cut(s) | 928 |
| LweI | GCATC | 2 cut(s) | 625, 903 |
| MaeI | CTAG | 3 cut(s) | 920, 1199, 1300 |
| MaeII | ACGT | 3 cut(s) | 298, 528, 1092 |
| MaeIII | GTNAC | 7 cut(s) | 39, 785, 873, 1088, 1118, 1141, 1249 |
| MalI | GATC | 3 cut(s) | 735, 993, 1067 |
| MboI | GATC | 3 cut(s) | 733, 991, 1065 |
| MboII | GAAGA | 4 cut(s) | 208, 226, 712, 1066 |
| MhlI | GDGCHC | 2 cut(s) | 802, 1198 |
| MluCI | AATT | 6 cut(s) | 46, 173, 503, 577, 729, 1110 |
| MlyI | GAGTC | 2 cut(s) | 577, 932 |
| MmeI | TCCRAC | 1 cut(s) | 273 |
| MnlI | CCTC | 9 cut(s) | 171, 179, 273, 284, 299, 690, 1055, 1240, 1280 |
| MroXI | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| MseI | TTAA | 3 cut(s) | 347, 420, 930 |
| MspI | CCGG | 3 cut(s) | 105, 320, 512 |
| MspR9I | CCNGG | 3 cut(s) | 593, 628, 1259 |
| Mva1269I | GAATGC | 3 cut(s) | 667, 982, 1063 |
| MvaI | CCWGG | 3 cut(s) | 593, 628, 1259 |
| MvnI | CGCG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 552, 662, 941, 950 |
| NdeII | GATC | 3 cut(s) | 733, 991, 1065 |
| NmeAIII | GCCGAG | 1 cut(s) | 920 |
| NmuCI | GTSAC | 5 cut(s) | 785, 873, 1088, 1118, 1249 |
| NspI | RCATGY | 3 cut(s) | 314, 972, 1075 |
| PceI | AGGCCT | 2 cut(s) | 353, 631 |
| PciI | ACATGT | 2 cut(s) | 310, 1071 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 525 |
| PctI | GAATGC | 3 cut(s) | 667, 982, 1063 |
| PdmI | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| PfeI | GAWTC | 4 cut(s) | 6, 508, 703, 1184 |
| PkrI | GCNGC | 1 cut(s) | 918 |
| PleI | GAGTC | 2 cut(s) | 576, 932 |
| PpsI | GAGTC | 2 cut(s) | 576, 932 |
| PscI | ACATGT | 2 cut(s) | 310, 1071 |
| Psp6I | CCWGG | 3 cut(s) | 591, 626, 1257 |
| PspGI | CCWGG | 3 cut(s) | 591, 626, 1257 |
| RsaI | GTAC | 1 cut(s) | 461 |
| RsaNI | GTAC | 1 cut(s) | 460 |
| SaqAI | TTAA | 3 cut(s) | 347, 420, 930 |
| SatI | GCNGC | 1 cut(s) | 917 |
| Sau3AI | GATC | 3 cut(s) | 733, 991, 1065 |
| SchI | GAGTC | 2 cut(s) | 577, 932 |
| ScrFI | CCNGG | 3 cut(s) | 593, 628, 1259 |
| SduI | GDGCHC | 2 cut(s) | 802, 1198 |
| SfaNI | GCATC | 2 cut(s) | 625, 903 |
| SmlI | CTYRAG | 1 cut(s) | 264 |
| SmoI | CTYRAG | 1 cut(s) | 264 |
| Sse9I | AATT | 6 cut(s) | 46, 173, 503, 577, 729, 1110 |
| SseBI | AGGCCT | 2 cut(s) | 353, 631 |
| SspMI | CTAG | 3 cut(s) | 920, 1199, 1300 |
| StuI | AGGCCT | 2 cut(s) | 353, 631 |
| StyD4I | CCNGG | 3 cut(s) | 591, 626, 1257 |
| TaaI | ACNGT | 1 cut(s) | 37 |
| TaiI | ACGT | 3 cut(s) | 301, 531, 1095 |
| TaqI | TCGA | 4 cut(s) | 171, 802, 1068, 1107 |
| TasI | AATT | 6 cut(s) | 46, 173, 503, 577, 729, 1110 |
| TatI | WGTACW | 1 cut(s) | 459 |
| TfiI | GAWTC | 4 cut(s) | 6, 508, 703, 1184 |
| Tru1I | TTAA | 3 cut(s) | 347, 420, 930 |
| Tru9I | TTAA | 3 cut(s) | 347, 420, 930 |
| TseFI | GTSAC | 5 cut(s) | 785, 873, 1088, 1118, 1249 |
| TseI | GCWGC | 1 cut(s) | 916 |
| Tsp45I | GTSAC | 5 cut(s) | 785, 873, 1088, 1118, 1249 |
| TspDTI | ATGAA | 4 cut(s) | 118, 220, 695, 1190 |
| XapI | RAATTY | 2 cut(s) | 173, 1110 |
| XceI | RCATGY | 3 cut(s) | 314, 972, 1075 |
| XmnI | GAANNNNTTC | 2 cut(s) | 507, 1113 |
| XspI | CTAG | 3 cut(s) | 920, 1199, 1300 |
| ZraI | GACGTC | 1 cut(s) | 299 |