Prupe.5G167700_v2.0.a1

rpm1,rps3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0019233
Physical Location & Seq
Reverse (-)
14469694 .. 14471549
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G167700.1

Sequence Viewer

Length: 1581 bp
ATGGCTAGTTCAAATGCCATAGAAGGAGAGATGGAAGAAACCGAAAATTCCCAAGAAAACGAAGAAGGGGAAACATCGGCTTCTTCTTCACCTCTTCCATTGCAATTATGCTACAGAGATTTGCCTGATTACCTTCAAAACTGCTTAATGTATTGTTGCATCCTCCCTGATGGCATTTCCAAAGGGAAACTTATTCGGTTGCTTGTGGCCCAAGGACTGATACAAGAAAAAGCAGGGCATGTTATGGAGGATGTAGCTGAAGAAAACATATTTGAATTGATAAGCCAGGGAATGCTTCAACTCAAGGAGCAACAATCTAGTGTAAGGACTAGATTGCAGGTCCCCTCTCCTGTTCGAAAATTCTGTGTTCAACAAATGGAGGAAGGAGATGTTGCAACCTTTCGGGCTTTCGTTTGTTCAGACATCACAGAACAGTTAGCCCACTTGAATAATCATCAACCTACTTCTTTATTCCTGCTCAGGAAAAATCTTTCTCAAGACGATGGTAACTGGCTCAAGTTTAATGGTGCAAACTCTTTAAGAGTGCTAGATCTTGAGCGTACCAAAATCAAAAGGTTACCAGATGAAGTGGGAGATCTGATAAGCCTCATCTATCTTGGCTTGAACCACACTGATATAGAAGAGCTTCCAGAGGGACTCGGCAGATTAAAAGCCCTACAAACTTTCGATATCAGATGGTGTGGGCATTTAACAGCCTTGCCAGACCAGATACTCAATCTTGTCAGGTTGAGGCACCTCAAAATGTACAAGAACTGGTTCCAAAATGTTCAGGGGGTGAAGCTACCTCCAGGAATAGGAGGAAGCTTCGCAAATCTTCTGACCCTTACAGGGGTACATGCTGGTGGTGGAATTGCAGAAGAATTAGGTAACCTGATACAGCTCAGAAGACTTGGAGTGATGGATGTGGCTGAAGAGAATATCAGTGAGCTACTTGCCTCCATAACTAAGATGTCTGGACTTCTTTCCTTGTCTCTAGAATCAATTCACACCTTCAACGAGGGAAAACTTGTCCTCCTGGATTCATTCTCGCCCCCACCATTTCTTCAAAAGCTTCGCCTGGAAGGCGTCCTAGAAAAGCTACCTTCTTGGTTTGGTTCCTTGGAAAGGCTAACAAACTTGAGATTAGGATTCTCTCACATGCCTGAGAACCAGTTTTCGGTACTTCAACTGCTACCCAACTTGAAAAATCTAAGCCTTTGGCATGCTTATGATGGAAAACAAATAGGAAAAGAGTTCTGTAGCGCTGGTGGGTTTGCCAAGCTCGAGGAACTCACCATTGCTTCTCGTGTTCTTGAGGAGTGGACAGAGCTTGAAGAGGGGGCACTACCTAGCTTGAAATACCTCTATGTACGCAATTGTCTGAGGCTGAGGATGTTACCTGAAGGCTTGCAGTTCCTCACAACACTGCAGCGTTTGGATTTGCTGCCTTTGCTGCATGATCATGCAGAGCGTCTGAAACCTGATGGTGGAGAGGAAAACTACAAAATTAGCCACATTCCAATGATTAGATTGATGACCACGTCTATGGTGGAAGAACTCGTTAAAGCTAAGGGAGAGTGA

Protein Analysis

527

Amino Acids

59.16

Weight (kDa)

5.36

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019233)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06010 FvH4_5g32740
malus_domestica MD14G1174200.v1.1
prunus_persica Prupe.5G167700_v2.0.a1
rosa_multiflora Rmu_sc0002040.1_g000041 Rmu_sc0028138.1_g000001 Rmu_sc0034887.1_g000001
rosa_rugosa Rorug07G0005200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 753
AcsI RAATTY 2 cut(s) 46, 359
AcuI CTGAAG 3 cut(s) 279, 951, 1422
AcyI GRCGYC 1 cut(s) 1086
AfaI GTAC 5 cut(s) 562, 767, 855, 1182, 1371
AfeI AGCGCT 1 cut(s) 1264
AfiI CCNNNNNNNGG 6 cut(s) 815, 849, 850, 1125, 1177, 1487
AjiI CACGTC 1 cut(s) 1542
AjnI CCWGG 4 cut(s) 285, 808, 1035, 1077
Alw26I GTCTC 1 cut(s) 996
Ama87I CYCGRG 1 cut(s) 1283
Aor51HI AGCGCT 1 cut(s) 1264
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 3 cut(s) 1429, 1444, 1453
ApoI RAATTY 2 cut(s) 46, 359
Asp700I GAANNNNTTC 3 cut(s) 645, 776, 1002
AspLEI GCGC 1 cut(s) 1265
AspS9I GGNCC 2 cut(s) 208, 340
AsuHPI GGTGA 3 cut(s) 81, 808, 1285
AsuII TTCGAA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 1283
AvaII GGWCC 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 1345
BanI GGYRCC 1 cut(s) 753
BauI CACGAG 1 cut(s) 1305
BbsI GAAGAC 1 cut(s) 913
BbvCI CCTCAGC 1 cut(s) 1388
BbvI GCAGC 3 cut(s) 1431, 1440, 1441
BccI CCATC 7 cut(s) 25, 164, 497, 690, 913, 1226, 1478
BciT130I CCWGG 4 cut(s) 287, 810, 1037, 1079
BclI TGATCA 1 cut(s) 1459
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 7 cut(s) 6, 318, 330, 548, 995, 1091, 1350
BfmI CTRYAG 3 cut(s) 112, 1258, 1427
BfoI RGCGCY 1 cut(s) 1266
BfuAI ACCTGC 1 cut(s) 328
BglI GCCNNNNNGGC 1 cut(s) 1083
BglII AGATCT 2 cut(s) 550, 595
BisI GCNGC 3 cut(s) 1430, 1445, 1454
BlsI GCNGC 3 cut(s) 1431, 1446, 1455
Bme1390I CCNGG 4 cut(s) 287, 810, 1037, 1079
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 1283
BmgBI CACGTC 1 cut(s) 1542
BmgT120I GGNCC 2 cut(s) 208, 340
BmiI GGNNCC 4 cut(s) 342, 755, 779, 1117
BmrFI CCNGG 4 cut(s) 287, 810, 1037, 1079
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 913
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 3 cut(s) 479, 1388, 1569
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 6 cut(s) 287, 480, 500, 575, 1159, 1334
BsaHI GRCGYC 1 cut(s) 1086
BsaJI CCNNGG 3 cut(s) 211, 286, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 6 cut(s) 815, 849, 850, 1125, 1177, 1487
Bse1I ACTGG 3 cut(s) 515, 779, 1171
Bse3DI GCAATG 2 cut(s) 98, 1296
BseBI CCWGG 4 cut(s) 287, 810, 1037, 1079
BseDI CCNNGG 3 cut(s) 211, 286, 1119
BseGI GGATG 4 cut(s) 159, 256, 928, 1398
BseLI CCNNNNNNNGG 6 cut(s) 815, 849, 850, 1125, 1177, 1487
BseMI GCAATG 2 cut(s) 98, 1296
BseMII CTCAG 5 cut(s) 493, 916, 1155, 1373, 1379
BseNI ACTGG 3 cut(s) 515, 779, 1171
BseRI GAGGAG 1 cut(s) 1331
BseSI GKGCMC 1 cut(s) 1345
BseXI GCAGC 3 cut(s) 1431, 1440, 1441
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 1283
BslFI GGGAC 2 cut(s) 326, 669
BslI CCNNNNNNNGG 6 cut(s) 815, 849, 850, 1125, 1177, 1487
BsmAI GTCTC 1 cut(s) 996
BsmFI GGGAC 2 cut(s) 326, 669
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 1283
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 1345
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 3 cut(s) 550, 595, 1459
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 5 cut(s) 492, 915, 1156, 1374, 1380
BspLI GGNNCC 4 cut(s) 342, 755, 779, 1117
BspMAI CTGCAG 1 cut(s) 1431
BspMI ACCTGC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 636
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 753
BsrDI GCAATG 2 cut(s) 98, 1296
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 3 cut(s) 515, 779, 1171
BssECI CCNNGG 3 cut(s) 211, 286, 1119
BssMI GATC 3 cut(s) 550, 595, 1459
BssNI GRCGYC 1 cut(s) 1086
BssSI CACGAG 1 cut(s) 1305
BssT1I CCWWGG 2 cut(s) 211, 1119
Bst2BI CACGAG 1 cut(s) 1305
Bst2UI CCWGG 4 cut(s) 287, 810, 1037, 1079
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 4 cut(s) 99, 636, 927, 1329
BstACI GRCGYC 1 cut(s) 1086
BstAUI TGTACA 1 cut(s) 765
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 1224, 1409
BstDEI CTNAG 8 cut(s) 479, 902, 966, 1164, 1211, 1382, 1388, 1569
BstEII GGTNACC 2 cut(s) 576, 887
BstENI CCTNNNNNAGG 1 cut(s) 1123
BstF5I GGATG 4 cut(s) 159, 256, 928, 1398
BstH2I RGCGCY 1 cut(s) 1266
BstHHI GCGC 1 cut(s) 1265
BstKTI GATC 3 cut(s) 553, 598, 1462
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 3 cut(s) 550, 595, 1459
BstMWI GCNNNNNNNGC 3 cut(s) 1083, 1450, 1453
BstNI CCWGG 4 cut(s) 287, 810, 1037, 1079
BstNSI RCATGY 4 cut(s) 242, 860, 1162, 1226
BstPI GGTNACC 2 cut(s) 576, 887
BstSCI CCNGG 4 cut(s) 285, 808, 1035, 1077
BstSFI CTRYAG 3 cut(s) 112, 1258, 1427
BstSLI GKGCMC 1 cut(s) 1345
BstV1I GCAGC 3 cut(s) 1431, 1440, 1441
BstV2I GAAGAC 1 cut(s) 913
BstX2I RGATCY 2 cut(s) 550, 595
BstXI CCANNNNNNTGG 1 cut(s) 1546
BstYI RGATCY 2 cut(s) 550, 595
BsuRI GGCC 1 cut(s) 209
BtrI CACGTC 1 cut(s) 1542
BtsCI GGATG 4 cut(s) 159, 256, 928, 1398
BtsI GCAGTG 1 cut(s) 1424
BtsIMutI CAGTG 3 cut(s) 630, 949, 1424
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 1224, 1409
CfoI GCGC 1 cut(s) 1265
Cfr13I GGNCC 2 cut(s) 208, 340
CseI GACGC 2 cut(s) 1075, 1460
Csp6I GTAC 5 cut(s) 561, 766, 854, 1181, 1370
CviAII CATG 6 cut(s) 239, 857, 1159, 1223, 1457, 1463
CviQI GTAC 5 cut(s) 561, 766, 854, 1181, 1370
DdeI CTNAG 8 cut(s) 479, 902, 966, 1164, 1211, 1382, 1388, 1569
DpnI GATC 3 cut(s) 552, 597, 1461
DpnII GATC 3 cut(s) 550, 595, 1459
Eam1104I CTCTTC 4 cut(s) 99, 636, 927, 1329
EarI CTCTTC 4 cut(s) 99, 636, 927, 1329
Eco130I CCWWGG 2 cut(s) 211, 1119
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 340
Eco47III AGCGCT 1 cut(s) 1264
Eco57I CTGAAG 3 cut(s) 279, 951, 1422
Eco88I CYCGRG 1 cut(s) 1283
Eco91I GGTNACC 2 cut(s) 576, 887
EcoNI CCTNNNNNAGG 1 cut(s) 1123
EcoO109I RGGNCCY 1 cut(s) 340
EcoO65I GGTNACC 2 cut(s) 576, 887
EcoRII CCWGG 4 cut(s) 285, 808, 1035, 1077
EcoRV GATATC 1 cut(s) 691
EcoT14I CCWWGG 2 cut(s) 211, 1119
ErhI CCWWGG 2 cut(s) 211, 1119
FaeI CATG 6 cut(s) 242, 860, 1162, 1226, 1460, 1466
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 2 cut(s) 326, 669
FatI CATG 6 cut(s) 238, 856, 1158, 1222, 1456, 1462
FbaI TGATCA 1 cut(s) 1459
Fnu4HI GCNGC 3 cut(s) 1430, 1445, 1454
FokI GGATG 4 cut(s) 146, 263, 935, 1405
Fsp4HI GCNGC 3 cut(s) 1430, 1445, 1454
FspBI CTAG 7 cut(s) 6, 318, 330, 548, 995, 1091, 1350
GlaI GCGC 1 cut(s) 1264
GluI GCNGC 3 cut(s) 1430, 1445, 1454
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 1266
HaeIII GGCC 1 cut(s) 209
HgaI GACGC 2 cut(s) 1075, 1460
HhaI GCGC 1 cut(s) 1265
Hin1I GRCGYC 1 cut(s) 1086
Hin1II CATG 6 cut(s) 242, 860, 1162, 1226, 1460, 1466
Hin6I GCGC 1 cut(s) 1263
HinP1I GCGC 1 cut(s) 1263
HindIII AAGCTT 2 cut(s) 823, 1070
HinfI GANTC 4 cut(s) 657, 998, 1040, 1149
HphI GGTGA 3 cut(s) 81, 808, 1285
Hpy166II GTNNAC 1 cut(s) 1323
Hpy188I TCNGA 7 cut(s) 421, 600, 695, 840, 905, 1383, 1476
Hpy188III TCNNGA 7 cut(s) 481, 497, 554, 650, 975, 995, 1313
Hpy8I GTNNAC 1 cut(s) 1323
HpyAV CCTTC 8 cut(s) 17, 59, 143, 377, 1021, 1076, 1113, 1397
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 1541
HpyF10VI GCNNNNNNNGC 3 cut(s) 1083, 1450, 1453
HpyF3I CTNAG 8 cut(s) 479, 902, 966, 1164, 1211, 1382, 1388, 1569
HpySE526I ACGT 1 cut(s) 1541
Hsp92I GRCGYC 1 cut(s) 1086
Hsp92II CATG 6 cut(s) 242, 860, 1162, 1226, 1460, 1466
HspAI GCGC 1 cut(s) 1263
Ksp22I TGATCA 1 cut(s) 1459
Kzo9I GATC 3 cut(s) 550, 595, 1459
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 3 cut(s) 1431, 1440, 1441
LweI GCATC 1 cut(s) 168
MaeI CTAG 7 cut(s) 6, 318, 330, 548, 995, 1091, 1350
MaeII ACGT 1 cut(s) 1541
MaeIII GTNAC 4 cut(s) 506, 576, 887, 1395
MalI GATC 3 cut(s) 552, 597, 1461
MboI GATC 3 cut(s) 550, 595, 1459
MfeI CAATTG 1 cut(s) 1375
MflI RGATCY 2 cut(s) 550, 595
MhlI GDGCHC 1 cut(s) 1345
MluCI AATT 9 cut(s) 46, 104, 275, 359, 870, 881, 1002, 1375, 1506
MlyI GAGTC 1 cut(s) 651
MroXI GAANNNNTTC 3 cut(s) 645, 776, 1002
MseI TTAA 6 cut(s) 146, 522, 539, 668, 710, 1563
MslI CAYNNNNRTG 5 cut(s) 861, 1227, 1461, 1520, 1544
MspR9I CCNGG 4 cut(s) 287, 810, 1037, 1079
MunI CAATTG 1 cut(s) 1375
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 4 cut(s) 287, 810, 1037, 1079
MwoI GCNNNNNNNGC 3 cut(s) 1083, 1450, 1453
NdeII GATC 3 cut(s) 550, 595, 1459
NlaIII CATG 6 cut(s) 242, 860, 1162, 1226, 1460, 1466
NlaIV GGNNCC 4 cut(s) 342, 755, 779, 1117
NmeAIII GCCGAG 1 cut(s) 639
NspI RCATGY 4 cut(s) 242, 860, 1162, 1226
NspV TTCGAA 1 cut(s) 355
PaeI GCATGC 1 cut(s) 1226
PaeR7I CTCGAG 1 cut(s) 1283
PciSI GCTCTTC 1 cut(s) 636
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 3 cut(s) 645, 776, 1002
PfeI GAWTC 3 cut(s) 998, 1040, 1149
PflFI GACNNNGTC 1 cut(s) 1540
PfoI TCCNGGA 2 cut(s) 808, 1035
PkrI GCNGC 3 cut(s) 1431, 1446, 1455
PleI GAGTC 1 cut(s) 651
PpsI GAGTC 1 cut(s) 651
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 4 cut(s) 285, 808, 1035, 1077
PspEI GGTNACC 2 cut(s) 576, 887
PspGI CCWGG 4 cut(s) 285, 808, 1035, 1077
PspN4I GGNNCC 4 cut(s) 342, 755, 779, 1117
PspPI GGNCC 2 cut(s) 208, 340
PspPPI RGGWCCY 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 1283
PstI CTGCAG 1 cut(s) 1431
PsuI RGATCY 2 cut(s) 550, 595
PsyI GACNNNGTC 1 cut(s) 1540
RsaI GTAC 5 cut(s) 562, 767, 855, 1182, 1371
RsaNI GTAC 5 cut(s) 561, 766, 854, 1181, 1370
RseI CAYNNNNRTG 5 cut(s) 861, 1227, 1461, 1520, 1544
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 6 cut(s) 146, 522, 539, 668, 710, 1563
SatI GCNGC 3 cut(s) 1430, 1445, 1454
Sau3AI GATC 3 cut(s) 550, 595, 1459
Sau96I GGNCC 2 cut(s) 208, 340
SchI GAGTC 1 cut(s) 651
ScrFI CCNGG 4 cut(s) 287, 810, 1037, 1079
SduI GDGCHC 1 cut(s) 1345
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 3 cut(s) 112, 1258, 1427
Sfr274I CTCGAG 1 cut(s) 1283
SfuI TTCGAA 1 cut(s) 355
SinI GGWCC 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 1283
SmiMI CAYNNNNRTG 5 cut(s) 861, 1227, 1461, 1520, 1544
SmlI CTYRAG 7 cut(s) 302, 495, 515, 554, 1138, 1283, 1313
SmoI CTYRAG 7 cut(s) 302, 495, 515, 554, 1138, 1283, 1313
SphI GCATGC 1 cut(s) 1226
Sse9I AATT 9 cut(s) 46, 104, 275, 359, 870, 881, 1002, 1375, 1506
SspMI CTAG 7 cut(s) 6, 318, 330, 548, 995, 1091, 1350
StyD4I CCNGG 4 cut(s) 285, 808, 1035, 1077
StyI CCWWGG 2 cut(s) 211, 1119
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 1544
TaqI TCGA 3 cut(s) 355, 687, 1284
TasI AATT 9 cut(s) 46, 104, 275, 359, 870, 881, 1002, 1375, 1506
TatI WGTACW 1 cut(s) 765
TfiI GAWTC 3 cut(s) 998, 1040, 1149
Tru1I TTAA 6 cut(s) 146, 522, 539, 668, 710, 1563
Tru9I TTAA 6 cut(s) 146, 522, 539, 668, 710, 1563
TscAI CASTG 3 cut(s) 637, 949, 1431
TseI GCWGC 3 cut(s) 1429, 1444, 1453
TspDTI ATGAA 2 cut(s) 600, 1032
TspRI CASTG 3 cut(s) 637, 949, 1431
Tth111I GACNNNGTC 1 cut(s) 1540
VpaK11BI GGWCC 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 1123
XapI RAATTY 2 cut(s) 46, 359
XbaI TCTAGA 1 cut(s) 994
XceI RCATGY 4 cut(s) 242, 860, 1162, 1226
XcmI CCANNNNNNNNNTGG 1 cut(s) 1546
XhoI CTCGAG 1 cut(s) 1283
XmnI GAANNNNTTC 3 cut(s) 645, 776, 1002
XspI CTAG 7 cut(s) 6, 318, 330, 548, 995, 1091, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.